RNA–Protein interactions for RNA: ENST00000555563.5

SHMT2-219, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 895 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-219ENST00000555563 PTDSS1P48651 473 aaKnown RBP11.9□□□□□ -0.5
SHMT2-219ENST00000555563 ZNF84P51523 738 aa11.9□□□□□ -0.5
SHMT2-219ENST00000555563 SMIM11AP58511 58 aa11.9□□□□□ -0.5
SHMT2-219ENST00000555563 MS4A2Q01362 244 aa11.9□□□□□ -0.5
SHMT2-219ENST00000555563 HGFACQ04756 655 aa11.9□□□□□ -0.5
SHMT2-219ENST00000555563 TRIM25Q14258 630 aaKnown RBP11.9□□□□□ -0.5
SHMT2-219ENST00000555563 NRN1LQ496H8 165 aa11.9□□□□□ -0.5
SHMT2-219ENST00000555563 MTX3Q5HYI7 312 aa11.9□□□□□ -0.5
SHMT2-219ENST00000555563 DHFR2Q86XF0 187 aa11.9□□□□□ -0.5
SHMT2-219ENST00000555563 NSMAFQ92636 917 aa11.9□□□□□ -0.5
SHMT2-219ENST00000555563 TRMT61AQ96FX7 289 aaKnown RBP11.9□□□□□ -0.5
SHMT2-219ENST00000555563 ZNF75AQ96N20 296 aa11.9□□□□□ -0.5
SHMT2-219ENST00000555563 GPA33Q99795 319 aa11.9□□□□□ -0.5
SHMT2-219ENST00000555563 SH3GL3Q99963 347 aa11.9□□□□□ -0.5
SHMT2-219ENST00000555563 ALG12Q9BV10 488 aa11.9□□□□□ -0.5
SHMT2-219ENST00000555563 CACNG6Q9BXT2 260 aa11.9□□□□□ -0.5
SHMT2-219ENST00000555563 C1orf21Q9H246 121 aa11.9□□□□□ -0.5
SHMT2-219ENST00000555563 CA10Q9NS85 328 aa11.9□□□□□ -0.5
SHMT2-219ENST00000555563 AURKCQ9UQB9 309 aa11.9□□□□□ -0.5
SHMT2-219ENST00000555563 SIGLEC7Q9Y286 467 aa11.9□□□□□ -0.5
SHMT2-219ENST00000555563 UGT2A1Q9Y4X1 527 aa11.9□□□□□ -0.5
SHMT2-219ENST00000555563 PLCE1Q9P212 2302 aa11.89□□□□□ -0.51
SHMT2-219ENST00000555563 ARID1AO14497 2285 aa11.89□□□□□ -0.51
SHMT2-219ENST00000555563 HEATR1Q9H583 2144 aaKnown RBP11.89□□□□□ -0.51
SHMT2-219ENST00000555563 A6NIZ1 184 aa11.89□□□□□ -0.51
SHMT2-219ENST00000555563 H7C1C5 153 aa11.89□□□□□ -0.51
SHMT2-219ENST00000555563 NDUFS7O75251 213 aa11.89□□□□□ -0.51
SHMT2-219ENST00000555563 ENTPD5O75356 428 aa11.89□□□□□ -0.51
SHMT2-219ENST00000555563 NDUFB2O95178 105 aa11.89□□□□□ -0.51
SHMT2-219ENST00000555563 FARS2O95363 451 aaKnown RBP11.89□□□□□ -0.51
SHMT2-219ENST00000555563 IGHV4-39P01824 125 aa11.89□□□□□ -0.51
SHMT2-219ENST00000555563 CD14P08571 375 aa11.89□□□□□ -0.51
SHMT2-219ENST00000555563 NR2C1P13056 603 aa11.89□□□□□ -0.51
SHMT2-219ENST00000555563 APOBEC3AP31941 199 aaPredicted RBP11.89□□□□□ -0.51
SHMT2-219ENST00000555563 MAGEA2P43356 314 aa11.89□□□□□ -0.51
SHMT2-219ENST00000555563 FXYD6P3P58550 94 aa11.89□□□□□ -0.51
SHMT2-219ENST00000555563 RAP1BP61224 184 aa11.89□□□□□ -0.51
SHMT2-219ENST00000555563 LCN6P62502 163 aa11.89□□□□□ -0.51
SHMT2-219ENST00000555563 RAB1AP62820 205 aa11.89□□□□□ -0.51
SHMT2-219ENST00000555563 RAP1AP62834 184 aa11.89□□□□□ -0.51
SHMT2-219ENST00000555563 MRPS34P82930 218 aaKnown RBP11.89□□□□□ -0.51
SHMT2-219ENST00000555563 MESTQ5EB52 335 aa11.89□□□□□ -0.51
SHMT2-219ENST00000555563 VHLLQ6RSH7 139 aa11.89□□□□□ -0.51
SHMT2-219ENST00000555563 THSD4Q6ZMP0 1018 aa11.89□□□□□ -0.51
SHMT2-219ENST00000555563 FAM122BQ7Z309 247 aa11.89□□□□□ -0.51
SHMT2-219ENST00000555563 ZER1Q7Z7L7 766 aa11.89□□□□□ -0.51
SHMT2-219ENST00000555563 ARIH2OSQ8N7S6 290 aa11.89□□□□□ -0.51
SHMT2-219ENST00000555563 NABP1Q96AH0 204 aa11.89□□□□□ -0.51
SHMT2-219ENST00000555563 ASB9Q96DX5 294 aa11.89□□□□□ -0.51
SHMT2-219ENST00000555563 Q96M85 177 aa11.89□□□□□ -0.51
SHMT2-219ENST00000555563 GPX7Q96SL4 187 aaPredicted RBP11.89□□□□□ -0.51
SHMT2-219ENST00000555563 THTPAQ9BU02 230 aa11.89□□□□□ -0.51
SHMT2-219ENST00000555563 NDEL1Q9GZM8 345 aa11.89□□□□□ -0.51
SHMT2-219ENST00000555563 DENND2DQ9H6A0 471 aaPredicted RBP11.89□□□□□ -0.51
SHMT2-219ENST00000555563 GDF2Q9UK05 429 aaPredicted RBP11.89□□□□□ -0.51
SHMT2-219ENST00000555563 TEX13CA0A0J9YWL9 993 aa11.88□□□□□ -0.51
SHMT2-219ENST00000555563 TRIM64A6NGJ6 449 aa11.88□□□□□ -0.51
SHMT2-219ENST00000555563 TRIM64BA6NI03 449 aa11.88□□□□□ -0.51
SHMT2-219ENST00000555563 UNC119BA6NIH7 251 aa11.88□□□□□ -0.51
SHMT2-219ENST00000555563 PTP4A3O75365 173 aa11.88□□□□□ -0.51
SHMT2-219ENST00000555563 CDAP32320 146 aa11.88□□□□□ -0.51
SHMT2-219ENST00000555563 SNTB2Q13425 540 aaKnown RBP11.88□□□□□ -0.51
SHMT2-219ENST00000555563 RAB39AQ14964 217 aa11.88□□□□□ -0.51
SHMT2-219ENST00000555563 ADIPOQQ15848 244 aa11.88□□□□□ -0.51
SHMT2-219ENST00000555563 SLC25A47Q6Q0C1 308 aa11.88□□□□□ -0.51
SHMT2-219ENST00000555563 SLC16A14Q7RTX9 510 aa11.88□□□□□ -0.51
SHMT2-219ENST00000555563 ZNF584Q8IVC4 421 aa11.88□□□□□ -0.51
SHMT2-219ENST00000555563 NUP37Q8NFH4 326 aa11.88□□□□□ -0.51
SHMT2-219ENST00000555563 OR4F15Q8NGB8 312 aa11.88□□□□□ -0.51
SHMT2-219ENST00000555563 FANK1Q8TC84 345 aa11.88□□□□□ -0.51
SHMT2-219ENST00000555563 RASD2Q96D21 266 aa11.88□□□□□ -0.51
SHMT2-219ENST00000555563 FBXO17Q96EF6 278 aa11.88□□□□□ -0.51
SHMT2-219ENST00000555563 ZNF570Q96NI8 536 aa11.88□□□□□ -0.51
SHMT2-219ENST00000555563 MAGIXQ9H6Y5 334 aa11.88□□□□□ -0.51
SHMT2-219ENST00000555563 GRHPRQ9UBQ7 328 aa11.88□□□□□ -0.51
SHMT2-219ENST00000555563 IL20RAQ9UHF4 553 aa11.88□□□□□ -0.51
SHMT2-219ENST00000555563 LYVE1Q9Y5Y7 322 aa11.88□□□□□ -0.51
SHMT2-219ENST00000555563 ITPR3Q14573 2671 aa11.87□□□□□ -0.51
SHMT2-219ENST00000555563 H7C417 338 aa11.87□□□□□ -0.51
SHMT2-219ENST00000555563 OR10H3O60404 316 aa11.87□□□□□ -0.51
SHMT2-219ENST00000555563 OR4A8P0C604 315 aa11.87□□□□□ -0.51
SHMT2-219ENST00000555563 ZNF35P13682 527 aa11.87□□□□□ -0.51
SHMT2-219ENST00000555563 FPR3P25089 353 aa11.87□□□□□ -0.51
SHMT2-219ENST00000555563 SERPINF1P36955 418 aa11.87□□□□□ -0.51
SHMT2-219ENST00000555563 KRR1Q13601 381 aaKnown RBP11.87□□□□□ -0.51
SHMT2-219ENST00000555563 MST1LQ2TV78 715 aa11.87□□□□□ -0.51
SHMT2-219ENST00000555563 SLC36A2Q495M3 483 aa11.87□□□□□ -0.51
SHMT2-219ENST00000555563 DNAL1Q4LDG9 190 aa11.87□□□□□ -0.51
SHMT2-219ENST00000555563 THEM4Q5T1C6 240 aa11.87□□□□□ -0.51
SHMT2-219ENST00000555563 KRT80Q6KB66 452 aa11.87□□□□□ -0.51
SHMT2-219ENST00000555563 DPPA2Q7Z7J5 298 aa11.87□□□□□ -0.51
SHMT2-219ENST00000555563 CIARTQ8N365 385 aaPredicted RBP11.87□□□□□ -0.51
SHMT2-219ENST00000555563 LRRC18Q8N456 261 aa11.87□□□□□ -0.51
SHMT2-219ENST00000555563 IL17RDQ8NFM7 739 aa11.87□□□□□ -0.51
SHMT2-219ENST00000555563 FNDC8Q8TC99 324 aa11.87□□□□□ -0.51
SHMT2-219ENST00000555563 SLC7A6OSQ96CW6 309 aaPredicted RBP11.87□□□□□ -0.51
SHMT2-219ENST00000555563 C18orf12Q96KH6 178 aa11.87□□□□□ -0.51
SHMT2-219ENST00000555563 ZNF442Q9H7R0 627 aa11.87□□□□□ -0.51
SHMT2-219ENST00000555563 NRIP3Q9NQ35 241 aa11.87□□□□□ -0.51
SHMT2-219ENST00000555563 FBXL3Q9UKT7 428 aa11.87□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms