RNA–Protein interactions for RNA: ENST00000554975.5

SHMT2-216, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 780 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-216ENST00000554975 PPP1R3DO95685 299 aa9.98□□□□□ -0.81
SHMT2-216ENST00000554975 LY6G6DO95868 133 aa9.98□□□□□ -0.81
SHMT2-216ENST00000554975 HLA-DQB1P01920 261 aa9.98□□□□□ -0.81
SHMT2-216ENST00000554975 HEXAP06865 529 aa9.98□□□□□ -0.81
SHMT2-216ENST00000554975 NGFRP08138 427 aa9.98□□□□□ -0.81
SHMT2-216ENST00000554975 OR2T7P0C7T2 308 aa9.98□□□□□ -0.81
SHMT2-216ENST00000554975 NME2P22392 152 aa9.98□□□□□ -0.81
SHMT2-216ENST00000554975 INPP1P49441 399 aa9.98□□□□□ -0.81
SHMT2-216ENST00000554975 GBX2P52951 348 aaPredicted RBP9.98□□□□□ -0.81
SHMT2-216ENST00000554975 SLC16A1P53985 500 aa9.98□□□□□ -0.81
SHMT2-216ENST00000554975 FXYD6P3P58550 94 aa9.98□□□□□ -0.81
SHMT2-216ENST00000554975 PMPCAQ10713 525 aa9.98□□□□□ -0.81
SHMT2-216ENST00000554975 CRMP1Q14194 572 aa9.98□□□□□ -0.81
SHMT2-216ENST00000554975 GLYR1Q49A26 553 aaPredicted RBP9.98□□□□□ -0.81
SHMT2-216ENST00000554975 HLA-DQA1Q5Y7H0 255 aa9.98□□□□□ -0.81
SHMT2-216ENST00000554975 SLC25A25Q6KCM7 469 aa9.98□□□□□ -0.81
SHMT2-216ENST00000554975 C5orf46Q6UWT4 87 aa9.98□□□□□ -0.81
SHMT2-216ENST00000554975 CCBE1Q6UXH8 406 aaPredicted RBP9.98□□□□□ -0.81
SHMT2-216ENST00000554975 RPS19BP1Q86WX3 136 aaKnown RBP9.98□□□□□ -0.81
SHMT2-216ENST00000554975 LRRC28Q86X40 367 aaPredicted RBP9.98□□□□□ -0.81
SHMT2-216ENST00000554975 ZNF615Q8N8J6 731 aa9.98□□□□□ -0.81
SHMT2-216ENST00000554975 FAM98AQ8NCA5 519 aaKnown RBP9.98□□□□□ -0.81
SHMT2-216ENST00000554975 BBS1Q8NFJ9 593 aa9.98□□□□□ -0.81
SHMT2-216ENST00000554975 OR2T27Q8NH04 317 aa9.98□□□□□ -0.81
SHMT2-216ENST00000554975 LIPHQ8WWY8 451 aa9.98□□□□□ -0.81
SHMT2-216ENST00000554975 DAZLQ92904 295 aaKnown RBP9.98□□□□□ -0.81
SHMT2-216ENST00000554975 TMEM203Q969S6 136 aa9.98□□□□□ -0.81
SHMT2-216ENST00000554975 EFHD2Q96C19 240 aaPredicted RBP9.98□□□□□ -0.81
SHMT2-216ENST00000554975 MBD6Q96DN6 1003 aa9.98□□□□□ -0.81
SHMT2-216ENST00000554975 ERMAPQ96PL5 475 aaPredicted RBP9.98□□□□□ -0.81
SHMT2-216ENST00000554975 TMED9Q9BVK6 235 aa9.98□□□□□ -0.81
SHMT2-216ENST00000554975 ABCB9Q9NP78 766 aa9.98□□□□□ -0.81
SHMT2-216ENST00000554975 FBXO34Q9NWN3 711 aa9.98□□□□□ -0.81
SHMT2-216ENST00000554975 COPS7AQ9UBW8 275 aa9.98□□□□□ -0.81
SHMT2-216ENST00000554975 CHRNA9Q9UGM1 479 aa9.98□□□□□ -0.81
SHMT2-216ENST00000554975 CLCA3PQ9Y6N3 262 aa9.98□□□□□ -0.81
SHMT2-216ENST00000554975 CHD3Q12873 2000 aaKnown RBP9.97□□□□□ -0.81
SHMT2-216ENST00000554975 TRAV27A0A087WT01 109 aa9.97□□□□□ -0.81
SHMT2-216ENST00000554975 FAM183AA6NL82 134 aa9.97□□□□□ -0.81
SHMT2-216ENST00000554975 C17orf105B2RV13 164 aa9.97□□□□□ -0.81
SHMT2-216ENST00000554975 TGFBR3LH3BV60 316 aa9.97□□□□□ -0.81
SHMT2-216ENST00000554975 WWP2O00308 870 aa9.97□□□□□ -0.81
SHMT2-216ENST00000554975 ZNF264O43296 627 aa9.97□□□□□ -0.81
SHMT2-216ENST00000554975 SEC14L5O43304 696 aa9.97□□□□□ -0.81
SHMT2-216ENST00000554975 CDC40O60508 579 aaKnown RBP eCLIP9.97□□□□□ -0.81
SHMT2-216ENST00000554975 SLC25A12O75746 678 aa9.97□□□□□ -0.81
SHMT2-216ENST00000554975 GATBO75879 557 aaKnown RBP9.97□□□□□ -0.81
SHMT2-216ENST00000554975 CT45A8P0DMV1 189 aa9.97□□□□□ -0.81
SHMT2-216ENST00000554975 CT45A9P0DMV2 189 aa9.97□□□□□ -0.81
SHMT2-216ENST00000554975 IL12BP29460 328 aa9.97□□□□□ -0.81
SHMT2-216ENST00000554975 HOXC12P31275 282 aa9.97□□□□□ -0.81
SHMT2-216ENST00000554975 RPL4P36578 427 aaKnown RBP9.97□□□□□ -0.81
SHMT2-216ENST00000554975 TMED10P49755 219 aaKnown RBP9.97□□□□□ -0.81
SHMT2-216ENST00000554975 RPS4XP62701 263 aaKnown RBP9.97□□□□□ -0.81
SHMT2-216ENST00000554975 PLAURQ03405 335 aa9.97□□□□□ -0.81
SHMT2-216ENST00000554975 CBX3Q13185 183 aa9.97□□□□□ -0.81
SHMT2-216ENST00000554975 DOC2BQ14184 412 aa9.97□□□□□ -0.81
SHMT2-216ENST00000554975 ZNF79Q15937 498 aa9.97□□□□□ -0.81
SHMT2-216ENST00000554975 CCDC58Q4VC31 144 aa9.97□□□□□ -0.81
SHMT2-216ENST00000554975 CT45A2Q5DJT8 189 aa9.97□□□□□ -0.81
SHMT2-216ENST00000554975 AGAP6Q5VW22 663 aa9.97□□□□□ -0.81
SHMT2-216ENST00000554975 DESI1Q6ICB0 168 aa9.97□□□□□ -0.81
SHMT2-216ENST00000554975 TMEM211Q6ICI0 200 aa9.97□□□□□ -0.81
SHMT2-216ENST00000554975 THSD4Q6ZMP0 1018 aa9.97□□□□□ -0.81
SHMT2-216ENST00000554975 TRILQ7L0X0 811 aa9.97□□□□□ -0.81
SHMT2-216ENST00000554975 VASH1Q7L8A9 365 aaPredicted RBP9.97□□□□□ -0.81
SHMT2-216ENST00000554975 FAM220AQ7Z4H9 259 aa9.97□□□□□ -0.81
SHMT2-216ENST00000554975 ZAR1Q86SH2 424 aa9.97□□□□□ -0.81
SHMT2-216ENST00000554975 CDC20BQ86Y33 519 aa9.97□□□□□ -0.81
SHMT2-216ENST00000554975 LIX1LQ8IVB5 337 aa9.97□□□□□ -0.81
SHMT2-216ENST00000554975 SYT14Q8NB59 555 aa9.97□□□□□ -0.81
SHMT2-216ENST00000554975 C19orf18Q8NEA5 215 aa9.97□□□□□ -0.81
SHMT2-216ENST00000554975 OR5W2Q8NH69 310 aa9.97□□□□□ -0.81
SHMT2-216ENST00000554975 ENKURQ8TC29 256 aa9.97□□□□□ -0.81
SHMT2-216ENST00000554975 ELP5Q8TE02 316 aa9.97□□□□□ -0.81
SHMT2-216ENST00000554975 SMPDL3BQ92485 455 aa9.97□□□□□ -0.81
SHMT2-216ENST00000554975 C3orf49Q96BT1 292 aa9.97□□□□□ -0.81
SHMT2-216ENST00000554975 LCORQ96JN0 433 aaPredicted RBP9.97□□□□□ -0.81
SHMT2-216ENST00000554975 TEAD3Q99594 435 aa9.97□□□□□ -0.81
SHMT2-216ENST00000554975 TM9SF2Q99805 663 aa9.97□□□□□ -0.81
SHMT2-216ENST00000554975 ZNF649Q9BS31 505 aa9.97□□□□□ -0.81
SHMT2-216ENST00000554975 OR51V1Q9H2C8 321 aa9.97□□□□□ -0.81
SHMT2-216ENST00000554975 TPK1Q9H3S4 243 aa9.97□□□□□ -0.81
SHMT2-216ENST00000554975 ADGRL4Q9HBW9 690 aa9.97□□□□□ -0.81
SHMT2-216ENST00000554975 POLE4Q9NR33 117 aa9.97□□□□□ -0.81
SHMT2-216ENST00000554975 MOKQ9UQ07 419 aa9.97□□□□□ -0.81
SHMT2-216ENST00000554975 NCKAP5O14513 1909 aa9.97□□□□□ -0.81
SHMT2-216ENST00000554975 CUBNO60494 3623 aa9.97□□□□□ -0.81
SHMT2-216ENST00000554975 KIAA1549Q9HCM3 1950 aa9.97□□□□□ -0.81
SHMT2-216ENST00000554975 EXPH5Q8NEV8 1989 aa9.96□□□□□ -0.81
SHMT2-216ENST00000554975 HEATR5AQ86XA9 2040 aa9.96□□□□□ -0.81
SHMT2-216ENST00000554975 A0A1W2PQ09 198 aa9.96□□□□□ -0.82
SHMT2-216ENST00000554975 PHYHO14832 338 aa9.96□□□□□ -0.82
SHMT2-216ENST00000554975 EIF4E2O60573 245 aaKnown RBP9.96□□□□□ -0.82
SHMT2-216ENST00000554975 SLC2A10O95528 541 aa9.96□□□□□ -0.82
SHMT2-216ENST00000554975 IGKV1D-16P01601 117 aa9.96□□□□□ -0.82
SHMT2-216ENST00000554975 CENPAP49450 140 aa9.96□□□□□ -0.82
SHMT2-216ENST00000554975 SLC25A1P53007 311 aa9.96□□□□□ -0.82
SHMT2-216ENST00000554975 NRG3P56975 720 aa9.96□□□□□ -0.82
SHMT2-216ENST00000554975 PON3Q15166 354 aa9.96□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms