RNA–Protein interactions for RNA: ENST00000552909.5

LIMA1-216, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 2,162 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-216ENST00000552909 DHRS7BQ6IAN0 325 aaPredicted RBP6.95□□□□□ -1.3
LIMA1-216ENST00000552909 MTFR2Q6P444 385 aa6.95□□□□□ -1.3
LIMA1-216ENST00000552909 CXXC5Q7LFL8 322 aaKnown RBP6.95□□□□□ -1.3
LIMA1-216ENST00000552909 RBM45Q8IUH3 476 aaKnown RBP6.95□□□□□ -1.3
LIMA1-216ENST00000552909 SERPINA12Q8IW75 414 aa6.95□□□□□ -1.3
LIMA1-216ENST00000552909 ZFP82Q8N141 532 aa6.95□□□□□ -1.3
LIMA1-216ENST00000552909 OR9A4Q8NGU2 314 aa6.95□□□□□ -1.3
LIMA1-216ENST00000552909 OR14A16Q8NHC5 309 aa6.95□□□□□ -1.3
LIMA1-216ENST00000552909 ZCCHC10Q8TBK6 192 aa6.95□□□□□ -1.3
LIMA1-216ENST00000552909 SLC39A7Q92504 469 aa6.95□□□□□ -1.3
LIMA1-216ENST00000552909 COL26A1Q96A83 441 aa6.95□□□□□ -1.3
LIMA1-216ENST00000552909 MS4A6EQ96DS6 147 aa6.95□□□□□ -1.3
LIMA1-216ENST00000552909 MMABQ96EY8 250 aaPredicted RBP6.95□□□□□ -1.3
LIMA1-216ENST00000552909 WDR89Q96FK6 387 aaPredicted RBP6.95□□□□□ -1.3
LIMA1-216ENST00000552909 SPSB2Q99619 263 aa6.95□□□□□ -1.3
LIMA1-216ENST00000552909 PLA2G12AQ9BZM1 189 aa6.95□□□□□ -1.3
LIMA1-216ENST00000552909 BARX1Q9HBU1 254 aaPredicted RBP6.95□□□□□ -1.3
LIMA1-216ENST00000552909 NOX3Q9HBY0 568 aa6.95□□□□□ -1.3
LIMA1-216ENST00000552909 RASL12Q9NYN1 266 aa6.95□□□□□ -1.3
LIMA1-216ENST00000552909 TAS2R5Q9NYW4 299 aa6.95□□□□□ -1.3
LIMA1-216ENST00000552909 MRPL15Q9P015 296 aaKnown RBP6.95□□□□□ -1.3
LIMA1-216ENST00000552909 OPN4Q9UHM6 478 aa6.95□□□□□ -1.3
LIMA1-216ENST00000552909 ACAD8Q9UKU7 415 aa6.95□□□□□ -1.3
LIMA1-216ENST00000552909 DOCK10Q96BY6 2186 aa6.95□□□□□ -1.3
LIMA1-216ENST00000552909 RP1L1Q8IWN7 2480 aaPredicted RBP6.95□□□□□ -1.3
LIMA1-216ENST00000552909 TNRC6AQ8NDV7 1962 aaKnown RBP6.95□□□□□ -1.3
LIMA1-216ENST00000552909 A0A1W2PRQ8 180 aa6.95□□□□□ -1.3
LIMA1-216ENST00000552909 UBE2QL1A1L167 161 aa6.95□□□□□ -1.3
LIMA1-216ENST00000552909 OR6C68A6NDL8 312 aa6.95□□□□□ -1.3
LIMA1-216ENST00000552909 OR2W5A6NFC9 320 aa6.95□□□□□ -1.3
LIMA1-216ENST00000552909 C4orf51C9J302 202 aa6.95□□□□□ -1.3
LIMA1-216ENST00000552909 K7EM74 188 aa6.95□□□□□ -1.3
LIMA1-216ENST00000552909 WRBO00258 174 aa6.95□□□□□ -1.3
LIMA1-216ENST00000552909 ST8SIA5O15466 376 aa6.95□□□□□ -1.3
LIMA1-216ENST00000552909 CRYBA1P05813 215 aa6.95□□□□□ -1.3
LIMA1-216ENST00000552909 BTF3P20290 206 aaKnown RBP6.95□□□□□ -1.3
LIMA1-216ENST00000552909 CNR1P21554 472 aa6.95□□□□□ -1.3
LIMA1-216ENST00000552909 MPGP29372 298 aa6.95□□□□□ -1.3
LIMA1-216ENST00000552909 OTX2P32243 289 aa6.95□□□□□ -1.3
LIMA1-216ENST00000552909 SSR2P43308 183 aa6.95□□□□□ -1.3
LIMA1-216ENST00000552909 STARP49675 285 aa6.95□□□□□ -1.3
LIMA1-216ENST00000552909 PSMD4P55036 377 aaKnown RBP6.95□□□□□ -1.3
LIMA1-216ENST00000552909 STXBP1P61764 594 aaKnown RBP6.95□□□□□ -1.3
LIMA1-216ENST00000552909 BTN3A2P78410 334 aa6.95□□□□□ -1.3
LIMA1-216ENST00000552909 PIN1Q13526 163 aaPredicted RBP6.95□□□□□ -1.3
LIMA1-216ENST00000552909 YOD1Q5VVQ6 348 aaPredicted RBP6.95□□□□□ -1.3
LIMA1-216ENST00000552909 C1orf94Q6P1W5 598 aa6.95□□□□□ -1.3
LIMA1-216ENST00000552909 ABHD17CQ6PCB6 329 aa6.95□□□□□ -1.3
LIMA1-216ENST00000552909 PRSS45Q7RTY3 260 aa6.95□□□□□ -1.3
LIMA1-216ENST00000552909 MMP21Q8N119 569 aa6.95□□□□□ -1.3
LIMA1-216ENST00000552909 ARMC10Q8N2F6 343 aa6.95□□□□□ -1.3
LIMA1-216ENST00000552909 TMEM185AQ8NFB2 350 aa6.95□□□□□ -1.3
LIMA1-216ENST00000552909 OR2Y1Q8NGV0 311 aa6.95□□□□□ -1.3
LIMA1-216ENST00000552909 STT3BQ8TCJ2 826 aa6.95□□□□□ -1.3
LIMA1-216ENST00000552909 PPCDCQ96CD2 204 aa6.95□□□□□ -1.3
LIMA1-216ENST00000552909 TM4SF18Q96CE8 201 aa6.95□□□□□ -1.3
LIMA1-216ENST00000552909 ZNF354BQ96LW1 612 aa6.95□□□□□ -1.3
LIMA1-216ENST00000552909 GINS4Q9BRT9 223 aa6.95□□□□□ -1.3
LIMA1-216ENST00000552909 ZNF649Q9BS31 505 aa6.95□□□□□ -1.3
LIMA1-216ENST00000552909 FNDC11Q9BVV2 318 aa6.95□□□□□ -1.3
LIMA1-216ENST00000552909 MFFQ9GZY8 342 aa6.95□□□□□ -1.3
LIMA1-216ENST00000552909 ENKD1Q9H0I2 346 aa6.95□□□□□ -1.3
LIMA1-216ENST00000552909 PIGMQ9H3S5 423 aa6.95□□□□□ -1.3
LIMA1-216ENST00000552909 EGLN3Q9H6Z9 239 aa6.95□□□□□ -1.3
LIMA1-216ENST00000552909 PRDM9Q9NQV7 894 aa6.95□□□□□ -1.3
LIMA1-216ENST00000552909 PRDM7Q9NQW5 492 aa6.95□□□□□ -1.3
LIMA1-216ENST00000552909 CTPS2Q9NRF8 586 aa6.95□□□□□ -1.3
LIMA1-216ENST00000552909 ZFP57Q9NU63 452 aa6.95□□□□□ -1.3
LIMA1-216ENST00000552909 ABRACLQ9P1F3 81 aa6.95□□□□□ -1.3
LIMA1-216ENST00000552909 FBXL3Q9UKT7 428 aa6.95□□□□□ -1.3
LIMA1-216ENST00000552909 EXOGQ9Y2C4 368 aaKnown RBP6.95□□□□□ -1.3
LIMA1-216ENST00000552909 NPFFR2Q9Y5X5 522 aa6.95□□□□□ -1.3
LIMA1-216ENST00000552909 TMEM218A2RU14 115 aa6.94□□□□□ -1.3
LIMA1-216ENST00000552909 ZNF860A6NHJ4 632 aa6.94□□□□□ -1.3
LIMA1-216ENST00000552909 ARGFXA6NJG6 315 aa6.94□□□□□ -1.3
LIMA1-216ENST00000552909 VSTM2BA6NLU5 285 aa6.94□□□□□ -1.3
LIMA1-216ENST00000552909 F5H5P2 479 aa6.94□□□□□ -1.3
LIMA1-216ENST00000552909 TMPRSS11DO60235 418 aa6.94□□□□□ -1.3
LIMA1-216ENST00000552909 KHDRBS3O75525 346 aaKnown RBP6.94□□□□□ -1.3
LIMA1-216ENST00000552909 C1QL1O75973 258 aa6.94□□□□□ -1.3
LIMA1-216ENST00000552909 IL5P05113 134 aa6.94□□□□□ -1.3
LIMA1-216ENST00000552909 IL3P08700 152 aa6.94□□□□□ -1.3
LIMA1-216ENST00000552909 ZGLP1P0C6A0 271 aa6.94□□□□□ -1.3
LIMA1-216ENST00000552909 RPA2P15927 270 aa6.94□□□□□ -1.3
LIMA1-216ENST00000552909 SPI1P17947 270 aa6.94□□□□□ -1.3
LIMA1-216ENST00000552909 ANXA7P20073 488 aaKnown RBP6.94□□□□□ -1.3
LIMA1-216ENST00000552909 RPL3P39023 403 aaKnown RBP6.94□□□□□ -1.3
LIMA1-216ENST00000552909 PTGFRP43088 359 aa6.94□□□□□ -1.3
LIMA1-216ENST00000552909 RAB5BP61020 215 aa6.94□□□□□ -1.3
LIMA1-216ENST00000552909 SNRPEP62304 92 aaKnown RBP6.94□□□□□ -1.3
LIMA1-216ENST00000552909 FAM53BQ14153 422 aa6.94□□□□□ -1.3
LIMA1-216ENST00000552909 SSPNQ14714 243 aa6.94□□□□□ -1.3
LIMA1-216ENST00000552909 TRAM1Q15629 374 aa6.94□□□□□ -1.3
LIMA1-216ENST00000552909 FAM27D1Q5T7N8 215 aa6.94□□□□□ -1.3
LIMA1-216ENST00000552909 FAM71E1Q6IPT2 247 aa6.94□□□□□ -1.3
LIMA1-216ENST00000552909 ZNF793Q6ZN11 406 aa6.94□□□□□ -1.3
LIMA1-216ENST00000552909 MOB3CQ70IA8 216 aa6.94□□□□□ -1.3
LIMA1-216ENST00000552909 LINGO2Q7L985 606 aa6.94□□□□□ -1.3
LIMA1-216ENST00000552909 CEACAM19Q7Z692 300 aa6.94□□□□□ -1.3
LIMA1-216ENST00000552909 MRGPREQ86SM8 312 aa6.94□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms