RNA–Protein interactions for RNA: ENST00000552720.5

LIMA1-213, Transcript of LIM domain and actin binding 1, humanhuman

TSL 1 (best)

Gene LIMA1, Length 2,457 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-213ENST00000552720 SLC19A3Q9BZV2 496 aa6.78□□□□□ -1.32
LIMA1-213ENST00000552720 S1PR5Q9H228 398 aa6.78□□□□□ -1.32
LIMA1-213ENST00000552720 ZNF275Q9NSD4 429 aaPredicted RBP6.78□□□□□ -1.32
LIMA1-213ENST00000552720 WBP1LQ9NX94 342 aa6.78□□□□□ -1.32
LIMA1-213ENST00000552720 RDH8Q9NYR8 311 aa6.78□□□□□ -1.32
LIMA1-213ENST00000552720 KCNN3Q9UGI6 736 aa6.78□□□□□ -1.32
LIMA1-213ENST00000552720 CD207Q9UJ71 328 aa6.78□□□□□ -1.32
LIMA1-213ENST00000552720 FBXL3Q9UKT7 428 aa6.78□□□□□ -1.32
LIMA1-213ENST00000552720 MOKQ9UQ07 419 aa6.78□□□□□ -1.32
LIMA1-213ENST00000552720 TRAV18A0A075B6X5 111 aa6.77□□□□□ -1.32
LIMA1-213ENST00000552720 TRBV5-7A0A0A0MS05 114 aa6.77□□□□□ -1.32
LIMA1-213ENST00000552720 OR5K4A6NMS3 321 aa6.77□□□□□ -1.32
LIMA1-213ENST00000552720 MCRIP1C9JLW8 97 aa6.77□□□□□ -1.32
LIMA1-213ENST00000552720 SMAD9O15198 467 aaKnown RBP6.77□□□□□ -1.32
LIMA1-213ENST00000552720 TPD52L2O43399 206 aaKnown RBP6.77□□□□□ -1.32
LIMA1-213ENST00000552720 HCRTR2O43614 444 aa6.77□□□□□ -1.32
LIMA1-213ENST00000552720 SUSD5O60279 629 aa6.77□□□□□ -1.32
LIMA1-213ENST00000552720 RBBP9O75884 186 aa6.77□□□□□ -1.32
LIMA1-213ENST00000552720 ACSM4P0C7M7 580 aa6.77□□□□□ -1.32
LIMA1-213ENST00000552720 PNMTP11086 282 aa6.77□□□□□ -1.32
LIMA1-213ENST00000552720 ZNF35P13682 527 aa6.77□□□□□ -1.32
LIMA1-213ENST00000552720 NFYAP23511 347 aaPredicted RBP6.77□□□□□ -1.32
LIMA1-213ENST00000552720 CD1CP29017 333 aa6.77□□□□□ -1.32
LIMA1-213ENST00000552720 POU3F4P49335 361 aa6.77□□□□□ -1.32
LIMA1-213ENST00000552720 SQSTM1Q13501 440 aa6.77□□□□□ -1.32
LIMA1-213ENST00000552720 MFSD13AQ14CX5 517 aa6.77□□□□□ -1.32
LIMA1-213ENST00000552720 NHLRC3Q5JS37 347 aa6.77□□□□□ -1.32
LIMA1-213ENST00000552720 PXDC1Q5TGL8 231 aa6.77□□□□□ -1.32
LIMA1-213ENST00000552720 EEF1A1P5Q5VTE0 462 aa6.77□□□□□ -1.32
LIMA1-213ENST00000552720 NKAIN2Q5VXU1 208 aa6.77□□□□□ -1.32
LIMA1-213ENST00000552720 TMEM205Q6UW68 189 aa6.77□□□□□ -1.32
LIMA1-213ENST00000552720 TMEM184AQ6ZMB5 413 aa6.77□□□□□ -1.32
LIMA1-213ENST00000552720 C3P1Q6ZMU1 363 aa6.77□□□□□ -1.32
LIMA1-213ENST00000552720 IDO2Q6ZQW0 420 aa6.77□□□□□ -1.32
LIMA1-213ENST00000552720 SLC36A1Q7Z2H8 476 aa6.77□□□□□ -1.32
LIMA1-213ENST00000552720 MARCH3Q86UD3 253 aa6.77□□□□□ -1.32
LIMA1-213ENST00000552720 ZNF227Q86WZ6 799 aa6.77□□□□□ -1.32
LIMA1-213ENST00000552720 TMEM151BQ8IW70 566 aa6.77□□□□□ -1.32
LIMA1-213ENST00000552720 PRSS58Q8IYP2 241 aa6.77□□□□□ -1.32
LIMA1-213ENST00000552720 MUC20Q8N307 709 aaPredicted RBP6.77□□□□□ -1.32
LIMA1-213ENST00000552720 KDM8Q8N371 416 aa6.77□□□□□ -1.32
LIMA1-213ENST00000552720 SPICQ8N5J4 248 aa6.77□□□□□ -1.32
LIMA1-213ENST00000552720 OR51S1Q8NGJ8 323 aa6.77□□□□□ -1.32
LIMA1-213ENST00000552720 STK35Q8TDR2 534 aa6.77□□□□□ -1.32
LIMA1-213ENST00000552720 C4orf45Q96LM5 186 aa6.77□□□□□ -1.32
LIMA1-213ENST00000552720 DMRTA2Q96SC8 542 aa6.77□□□□□ -1.32
LIMA1-213ENST00000552720 INTS14Q96SY0 518 aa6.77□□□□□ -1.32
LIMA1-213ENST00000552720 ELOVL3Q9HB03 270 aa6.77□□□□□ -1.32
LIMA1-213ENST00000552720 SOHLH2Q9NX45 425 aa6.77□□□□□ -1.32
LIMA1-213ENST00000552720 EMC3Q9P0I2 261 aa6.77□□□□□ -1.32
LIMA1-213ENST00000552720 STEAP1Q9UHE8 339 aa6.77□□□□□ -1.32
LIMA1-213ENST00000552720 METRNQ9UJH8 293 aa6.77□□□□□ -1.32
LIMA1-213ENST00000552720 DMDP11532 3685 aa6.77□□□□□ -1.33
LIMA1-213ENST00000552720 RTTNQ86VV8 2226 aa6.77□□□□□ -1.33
LIMA1-213ENST00000552720 COL5A1P20908 1838 aaPredicted RBP6.77□□□□□ -1.33
LIMA1-213ENST00000552720 TMEM272A0A1B0GTI8 110 aa6.77□□□□□ -1.33
LIMA1-213ENST00000552720 GGT3PA6NGU5 568 aa6.77□□□□□ -1.33
LIMA1-213ENST00000552720 H7C417 338 aa6.77□□□□□ -1.33
LIMA1-213ENST00000552720 XRCC3O43542 346 aa6.77□□□□□ -1.33
LIMA1-213ENST00000552720 SRPX2O60687 465 aaPredicted RBP6.77□□□□□ -1.33
LIMA1-213ENST00000552720 OR2A4O95047 310 aa6.77□□□□□ -1.33
LIMA1-213ENST00000552720 MPZL1O95297 269 aa6.77□□□□□ -1.33
LIMA1-213ENST00000552720 IL33O95760 270 aa6.77□□□□□ -1.33
LIMA1-213ENST00000552720 NUDT14O95848 222 aa6.77□□□□□ -1.33
LIMA1-213ENST00000552720 TXNDC12O95881 172 aa6.77□□□□□ -1.33
LIMA1-213ENST00000552720 CD3DP04234 171 aa6.77□□□□□ -1.33
LIMA1-213ENST00000552720 GIPP09681 153 aaPredicted RBP6.77□□□□□ -1.33
LIMA1-213ENST00000552720 GTF2F2P13984 249 aa6.77□□□□□ -1.33
LIMA1-213ENST00000552720 CPN1P15169 458 aa6.77□□□□□ -1.33
LIMA1-213ENST00000552720 MAPK3P27361 379 aaPredicted RBP6.77□□□□□ -1.33
LIMA1-213ENST00000552720 GABRA4P48169 554 aa6.77□□□□□ -1.33
LIMA1-213ENST00000552720 RAB14P61106 215 aa6.77□□□□□ -1.33
LIMA1-213ENST00000552720 ZP2Q05996 745 aa6.77□□□□□ -1.33
LIMA1-213ENST00000552720 MFGE8Q08431 387 aaPredicted RBP6.77□□□□□ -1.33
LIMA1-213ENST00000552720 C2orf76Q3KRA6 126 aa6.77□□□□□ -1.33
LIMA1-213ENST00000552720 DNM1P46Q6ZS02 220 aa6.77□□□□□ -1.33
LIMA1-213ENST00000552720 KCTD20Q7Z5Y7 419 aa6.77□□□□□ -1.33
LIMA1-213ENST00000552720 EID2Q8N6I1 236 aa6.77□□□□□ -1.33
LIMA1-213ENST00000552720 COQ8AQ8NI60 647 aa6.77□□□□□ -1.33
LIMA1-213ENST00000552720 GPR148Q8TDV2 347 aa6.77□□□□□ -1.33
LIMA1-213ENST00000552720 LIPHQ8WWY8 451 aa6.77□□□□□ -1.33
LIMA1-213ENST00000552720 RBPMSQ93062 196 aaKnown RBP6.77□□□□□ -1.33
LIMA1-213ENST00000552720 MCHR2Q969V1 340 aa6.77□□□□□ -1.33
LIMA1-213ENST00000552720 MARVELD3Q96A59 401 aa6.77□□□□□ -1.33
LIMA1-213ENST00000552720 RADILQ96JH8 1075 aa6.77□□□□□ -1.33
LIMA1-213ENST00000552720 KLHL15Q96M94 604 aa6.77□□□□□ -1.33
LIMA1-213ENST00000552720 LINC00052Q96N35 136 aa6.77□□□□□ -1.33
LIMA1-213ENST00000552720 OR2A7Q96R45 310 aa6.77□□□□□ -1.33
LIMA1-213ENST00000552720 COMMD4Q9H0A8 199 aa6.77□□□□□ -1.33
LIMA1-213ENST00000552720 ZMAT3Q9HA38 289 aaKnown RBP6.77□□□□□ -1.33
LIMA1-213ENST00000552720 MRPL22Q9NWU5 206 aaKnown RBP6.77□□□□□ -1.33
LIMA1-213ENST00000552720 DHCR7Q9UBM7 475 aaKnown RBP6.77□□□□□ -1.33
LIMA1-213ENST00000552720 MTFP1Q9UDX5 166 aa6.77□□□□□ -1.33
LIMA1-213ENST00000552720 COLQQ9Y215 455 aaPredicted RBP6.77□□□□□ -1.33
LIMA1-213ENST00000552720 ETV7Q9Y603 341 aa6.77□□□□□ -1.33
LIMA1-213ENST00000552720 FXYD6-FXYD2A0A087WZ82 144 aa6.76□□□□□ -1.33
LIMA1-213ENST00000552720 SHISA7A6NL88 538 aa6.76□□□□□ -1.33
LIMA1-213ENST00000552720 B8ZZF3 427 aa6.76□□□□□ -1.33
LIMA1-213ENST00000552720 GOSR2O14653 212 aa6.76□□□□□ -1.33
LIMA1-213ENST00000552720 RENP00797 406 aa6.76□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms