RNA–Protein interactions for RNA: ENST00000552338.5

LIMA1-211, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 555 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-211ENST00000552338 OPRM1P35372 400 aa8.45□□□□□ -1.06
LIMA1-211ENST00000552338 CSNK1A1P48729 337 aa8.45□□□□□ -1.06
LIMA1-211ENST00000552338 CLRN1P58418 232 aa8.45□□□□□ -1.06
LIMA1-211ENST00000552338 LSM6P62312 80 aaKnown RBP8.45□□□□□ -1.06
LIMA1-211ENST00000552338 MRPS34P82930 218 aaKnown RBP8.45□□□□□ -1.06
LIMA1-211ENST00000552338 IL5RAQ01344 420 aa8.45□□□□□ -1.06
LIMA1-211ENST00000552338 TLE1Q04724 770 aa8.45□□□□□ -1.06
LIMA1-211ENST00000552338 LGALS3BPQ08380 585 aa8.45□□□□□ -1.06
LIMA1-211ENST00000552338 FOXF2Q12947 444 aa8.45□□□□□ -1.06
LIMA1-211ENST00000552338 FBXL19-AS1Q494R0 122 aa8.45□□□□□ -1.06
LIMA1-211ENST00000552338 PHYHD1Q5SRE7 291 aa8.45□□□□□ -1.06
LIMA1-211ENST00000552338 TSPO2Q5TGU0 170 aa8.45□□□□□ -1.06
LIMA1-211ENST00000552338 FBXW9Q5XUX1 488 aa8.45□□□□□ -1.06
LIMA1-211ENST00000552338 MTFR2Q6P444 385 aa8.45□□□□□ -1.06
LIMA1-211ENST00000552338 PLBD1Q6P4A8 553 aa8.45□□□□□ -1.06
LIMA1-211ENST00000552338 UGT2A3Q6UWM9 527 aa8.45□□□□□ -1.06
LIMA1-211ENST00000552338 PLXDC2Q6UX71 529 aa8.45□□□□□ -1.06
LIMA1-211ENST00000552338 Q6ZT83 130 aa8.45□□□□□ -1.06
LIMA1-211ENST00000552338 RHOUQ7L0Q8 258 aa8.45□□□□□ -1.06
LIMA1-211ENST00000552338 RPRMLQ8N4K4 120 aa8.45□□□□□ -1.06
LIMA1-211ENST00000552338 APH1AQ96BI3 265 aa8.45□□□□□ -1.06
LIMA1-211ENST00000552338 IL4I1Q96RQ9 567 aa8.45□□□□□ -1.06
LIMA1-211ENST00000552338 OR10A4Q9H209 315 aa8.45□□□□□ -1.06
LIMA1-211ENST00000552338 FGF20Q9NP95 211 aaPredicted RBP8.45□□□□□ -1.06
LIMA1-211ENST00000552338 B3GAT2Q9NPZ5 323 aa8.45□□□□□ -1.06
LIMA1-211ENST00000552338 SLC7A10Q9NS82 523 aa8.45□□□□□ -1.06
LIMA1-211ENST00000552338 ASB6Q9NWX5 421 aa8.45□□□□□ -1.06
LIMA1-211ENST00000552338 H2AFY2Q9P0M6 372 aaPredicted RBP8.45□□□□□ -1.06
LIMA1-211ENST00000552338 TINAGQ9UJW2 476 aa8.45□□□□□ -1.06
LIMA1-211ENST00000552338 GPR52Q9Y2T5 361 aa8.45□□□□□ -1.06
LIMA1-211ENST00000552338 RPL36Q9Y3U8 105 aaKnown RBP8.45□□□□□ -1.06
LIMA1-211ENST00000552338 UGT2A1Q9Y4X1 527 aa8.45□□□□□ -1.06
LIMA1-211ENST00000552338 HIVEP3Q5T1R4 2406 aa8.45□□□□□ -1.06
LIMA1-211ENST00000552338 A0A0G2JNJ9 132 aa8.44□□□□□ -1.06
LIMA1-211ENST00000552338 IRGMA1A4Y4 181 aa8.44□□□□□ -1.06
LIMA1-211ENST00000552338 FAM183AA6NL82 134 aa8.44□□□□□ -1.06
LIMA1-211ENST00000552338 A8MXE2 369 aa8.44□□□□□ -1.06
LIMA1-211ENST00000552338 ZNF99A8MXY4 864 aaPredicted RBP8.44□□□□□ -1.06
LIMA1-211ENST00000552338 SLC16A7O60669 478 aa8.44□□□□□ -1.06
LIMA1-211ENST00000552338 ENTPD6O75354 484 aa8.44□□□□□ -1.06
LIMA1-211ENST00000552338 UPK3AO75631 287 aa8.44□□□□□ -1.06
LIMA1-211ENST00000552338 GAAP10253 952 aa8.44□□□□□ -1.06
LIMA1-211ENST00000552338 PAX7P23759 505 aa8.44□□□□□ -1.06
LIMA1-211ENST00000552338 EDNRAP25101 427 aa8.44□□□□□ -1.06
LIMA1-211ENST00000552338 LAP3P28838 519 aa8.44□□□□□ -1.06
LIMA1-211ENST00000552338 MPGP29372 298 aa8.44□□□□□ -1.06
LIMA1-211ENST00000552338 MTNR1AP48039 350 aa8.44□□□□□ -1.06
LIMA1-211ENST00000552338 SH3BGRP55822 239 aaPredicted RBP8.44□□□□□ -1.06
LIMA1-211ENST00000552338 SLC35A2P78381 396 aa8.44□□□□□ -1.06
LIMA1-211ENST00000552338 HSF2Q03933 536 aa8.44□□□□□ -1.06
LIMA1-211ENST00000552338 GLO1Q04760 184 aa8.44□□□□□ -1.06
LIMA1-211ENST00000552338 PMPCAQ10713 525 aa8.44□□□□□ -1.06
LIMA1-211ENST00000552338 RAB40BQ12829 278 aa8.44□□□□□ -1.06
LIMA1-211ENST00000552338 POU4F2Q12837 409 aa8.44□□□□□ -1.06
LIMA1-211ENST00000552338 FAM27BQ5VT28 67 aa8.44□□□□□ -1.06
LIMA1-211ENST00000552338 KRT80Q6KB66 452 aa8.44□□□□□ -1.06
LIMA1-211ENST00000552338 BEND4Q6ZU67 534 aa8.44□□□□□ -1.06
LIMA1-211ENST00000552338 LINGO2Q7L985 606 aa8.44□□□□□ -1.06
LIMA1-211ENST00000552338 BTLAQ7Z6A9 289 aa8.44□□□□□ -1.06
LIMA1-211ENST00000552338 MRGPRGQ86SM5 289 aa8.44□□□□□ -1.06
LIMA1-211ENST00000552338 SYT9Q86SS6 491 aa8.44□□□□□ -1.06
LIMA1-211ENST00000552338 TIGD4Q8IY51 512 aa8.44□□□□□ -1.06
LIMA1-211ENST00000552338 GABRG1Q8N1C3 465 aa8.44□□□□□ -1.06
LIMA1-211ENST00000552338 CYB561A3Q8NBI2 242 aa8.44□□□□□ -1.06
LIMA1-211ENST00000552338 C1orf162Q8NEQ5 155 aaPredicted RBP8.44□□□□□ -1.06
LIMA1-211ENST00000552338 SLC26A10Q8NG04 563 aa8.44□□□□□ -1.06
LIMA1-211ENST00000552338 OR6N1Q8NGY5 312 aa8.44□□□□□ -1.06
LIMA1-211ENST00000552338 CNIH3Q8TBE1 160 aa8.44□□□□□ -1.06
LIMA1-211ENST00000552338 ZNRF4Q8WWF5 429 aa8.44□□□□□ -1.06
LIMA1-211ENST00000552338 IPCEF1Q8WWN9 437 aaPredicted RBP8.44□□□□□ -1.06
LIMA1-211ENST00000552338 RND1Q92730 232 aa8.44□□□□□ -1.06
LIMA1-211ENST00000552338 CNBD2Q96M20 576 aa8.44□□□□□ -1.06
LIMA1-211ENST00000552338 MNTQ99583 582 aa8.44□□□□□ -1.06
LIMA1-211ENST00000552338 USB1Q9BQ65 265 aaKnown RBP8.44□□□□□ -1.06
LIMA1-211ENST00000552338 GPR35Q9HC97 309 aa8.44□□□□□ -1.06
LIMA1-211ENST00000552338 RPRD1BQ9NQG5 326 aaKnown RBP8.44□□□□□ -1.06
LIMA1-211ENST00000552338 RASSF1Q9NS23 344 aa8.44□□□□□ -1.06
LIMA1-211ENST00000552338 Q9UFV3 132 aa8.44□□□□□ -1.06
LIMA1-211ENST00000552338 PSORS1C1Q9UIG5 152 aa8.44□□□□□ -1.06
LIMA1-211ENST00000552338 KCNG2Q9UJ96 466 aa8.44□□□□□ -1.06
LIMA1-211ENST00000552338 PCDHGB5Q9Y5G0 923 aa8.44□□□□□ -1.06
LIMA1-211ENST00000552338 PCDHGB1Q9Y5G3 927 aa8.44□□□□□ -1.06
LIMA1-211ENST00000552338 IGSF10Q6WRI0 2623 aa8.43□□□□□ -1.06
LIMA1-211ENST00000552338 HCFC1P51610 2035 aa8.43□□□□□ -1.06
LIMA1-211ENST00000552338 M0R129 80 aa8.43□□□□□ -1.06
LIMA1-211ENST00000552338 SLC1A7O00341 560 aa8.43□□□□□ -1.06
LIMA1-211ENST00000552338 SERPINI2O75830 405 aa8.43□□□□□ -1.06
LIMA1-211ENST00000552338 IGHA1P01876 353 aa8.43□□□□□ -1.06
LIMA1-211ENST00000552338 SBK2P0C263 348 aa8.43□□□□□ -1.06
LIMA1-211ENST00000552338 CLUP10909 449 aa8.43□□□□□ -1.06
LIMA1-211ENST00000552338 DBTP11182 482 aaKnown RBP8.43□□□□□ -1.06
LIMA1-211ENST00000552338 GSTT1P30711 240 aa8.43□□□□□ -1.06
LIMA1-211ENST00000552338 FMO3P31513 532 aa8.43□□□□□ -1.06
LIMA1-211ENST00000552338 CDH11P55287 796 aa8.43□□□□□ -1.06
LIMA1-211ENST00000552338 PER3P56645 1201 aa8.43□□□□□ -1.06
LIMA1-211ENST00000552338 GABARAPL2P60520 117 aa8.43□□□□□ -1.06
LIMA1-211ENST00000552338 HIST1H3AP68431 136 aa8.43□□□□□ -1.06
LIMA1-211ENST00000552338 APOFQ13790 326 aa8.43□□□□□ -1.06
LIMA1-211ENST00000552338 P2RY6Q15077 328 aa8.43□□□□□ -1.06
LIMA1-211ENST00000552338 ETFDHQ16134 617 aa8.43□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms