RNA–Protein interactions for RNA: ENST00000548259.1

VPS29-204, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-204ENST00000548259 SLC25A44Q96H78 314 aaPredicted RBP14.34□□□□□ -0.11
VPS29-204ENST00000548259 TMEM43Q9BTV4 400 aa14.34□□□□□ -0.11
VPS29-204ENST00000548259 SLC19A3Q9BZV2 496 aa14.34□□□□□ -0.11
VPS29-204ENST00000548259 EVA1AQ9H8M9 152 aa14.34□□□□□ -0.11
VPS29-204ENST00000548259 LEF1Q9UJU2 399 aaPredicted RBP14.34□□□□□ -0.11
VPS29-204ENST00000548259 ZDHHC8Q9ULC8 765 aa14.34□□□□□ -0.11
VPS29-204ENST00000548259 PRORSD1PA6NEY8 169 aa14.33□□□□□ -0.12
VPS29-204ENST00000548259 C11orf98E9PRG8 122 aa14.33□□□□□ -0.12
VPS29-204ENST00000548259 UBOX5O94941 541 aa14.33□□□□□ -0.12
VPS29-204ENST00000548259 KNG1P01042 644 aa14.33□□□□□ -0.12
VPS29-204ENST00000548259 CCNOP22674 350 aa14.33□□□□□ -0.12
VPS29-204ENST00000548259 HTR2AP28223 471 aa14.33□□□□□ -0.12
VPS29-204ENST00000548259 RGS8P57771 180 aaPredicted RBP14.33□□□□□ -0.12
VPS29-204ENST00000548259 RGNQ15493 299 aa14.33□□□□□ -0.12
VPS29-204ENST00000548259 TUSC1Q2TAM9 212 aa14.33□□□□□ -0.12
VPS29-204ENST00000548259 LEG1Q6P5S2 330 aa14.33□□□□□ -0.12
VPS29-204ENST00000548259 DHRS4L2Q6PKH6 230 aa14.33□□□□□ -0.12
VPS29-204ENST00000548259 SLC35D2Q76EJ3 337 aa14.33□□□□□ -0.12
VPS29-204ENST00000548259 RANBP3LQ86VV4 465 aaPredicted RBP14.33□□□□□ -0.12
VPS29-204ENST00000548259 MOGAT1Q96PD6 335 aa14.33□□□□□ -0.12
VPS29-204ENST00000548259 SORT1Q99523 831 aa14.33□□□□□ -0.12
VPS29-204ENST00000548259 SLC6A13Q9NSD5 602 aa14.33□□□□□ -0.12
VPS29-204ENST00000548259 MMP24Q9Y5R2 645 aa14.33□□□□□ -0.12
VPS29-204ENST00000548259 NPTNQ9Y639 398 aa14.33□□□□□ -0.12
VPS29-204ENST00000548259 VWFP04275 2813 aa14.33□□□□□ -0.12
VPS29-204ENST00000548259 M0QZ24 198 aa14.32□□□□□ -0.12
VPS29-204ENST00000548259 TM9SF1O15321 606 aa14.32□□□□□ -0.12
VPS29-204ENST00000548259 RNF13O43567 381 aa14.32□□□□□ -0.12
VPS29-204ENST00000548259 IGHV1-46P01743 117 aa14.32□□□□□ -0.12
VPS29-204ENST00000548259 HIST1H2ABP04908 130 aa14.32□□□□□ -0.12
VPS29-204ENST00000548259 CRYBA1P05813 215 aa14.32□□□□□ -0.12
VPS29-204ENST00000548259 SBK2P0C263 348 aa14.32□□□□□ -0.12
VPS29-204ENST00000548259 PCGF2P35227 344 aa14.32□□□□□ -0.12
VPS29-204ENST00000548259 OR1Q1Q15612 314 aa14.32□□□□□ -0.12
VPS29-204ENST00000548259 ZNF362Q5T0B9 420 aaPredicted RBP14.32□□□□□ -0.12
VPS29-204ENST00000548259 NXNQ6DKJ4 435 aa14.32□□□□□ -0.12
VPS29-204ENST00000548259 NHLRC1Q6VVB1 395 aa14.32□□□□□ -0.12
VPS29-204ENST00000548259 SPATC1Q76KD6 591 aa14.32□□□□□ -0.12
VPS29-204ENST00000548259 HIST3H2AQ7L7L0 130 aa14.32□□□□□ -0.12
VPS29-204ENST00000548259 HIPK4Q8NE63 616 aa14.32□□□□□ -0.12
VPS29-204ENST00000548259 HIST1H2ACQ93077 130 aa14.32□□□□□ -0.12
VPS29-204ENST00000548259 MAL2Q969L2 176 aa14.32□□□□□ -0.12
VPS29-204ENST00000548259 TMIGD2Q96BF3 282 aa14.32□□□□□ -0.12
VPS29-204ENST00000548259 C20orf27Q9GZN8 174 aa14.32□□□□□ -0.12
VPS29-204ENST00000548259 OR5V1Q9UGF6 321 aa14.32□□□□□ -0.12
VPS29-204ENST00000548259 POLR3KQ9Y2Y1 108 aaPredicted RBP14.32□□□□□ -0.12
VPS29-204ENST00000548259 A0A0B4J2E0 115 aa14.31□□□□□ -0.12
VPS29-204ENST00000548259 A0A1B0GX12 115 aa14.31□□□□□ -0.12
VPS29-204ENST00000548259 CLIC1O00299 241 aa14.31□□□□□ -0.12
VPS29-204ENST00000548259 SDHDO14521 159 aa14.31□□□□□ -0.12
VPS29-204ENST00000548259 IGHG1P01857 330 aa14.31□□□□□ -0.12
VPS29-204ENST00000548259 QDPRP09417 244 aa14.31□□□□□ -0.12
VPS29-204ENST00000548259 ZNF12P17014 697 aa14.31□□□□□ -0.12
VPS29-204ENST00000548259 TNFSF4P23510 183 aa14.31□□□□□ -0.12
VPS29-204ENST00000548259 CLRN1P58418 232 aa14.31□□□□□ -0.12
VPS29-204ENST00000548259 SLC9A3R2Q15599 337 aa14.31□□□□□ -0.12
VPS29-204ENST00000548259 ESCO2Q56NI9 601 aa14.31□□□□□ -0.12
VPS29-204ENST00000548259 REEP3Q6NUK4 255 aa14.31□□□□□ -0.12
VPS29-204ENST00000548259 C16orf87Q6PH81 154 aa14.31□□□□□ -0.12
VPS29-204ENST00000548259 WDR88Q6ZMY6 472 aa14.31□□□□□ -0.12
VPS29-204ENST00000548259 HDDC2Q7Z4H3 204 aa14.31□□□□□ -0.12
VPS29-204ENST00000548259 ZER1Q7Z7L7 766 aa14.31□□□□□ -0.12
VPS29-204ENST00000548259 BCL6BQ8N143 479 aaPredicted RBP14.31□□□□□ -0.12
VPS29-204ENST00000548259 GTF3AQ92664 365 aaKnown RBP14.31□□□□□ -0.12
VPS29-204ENST00000548259 CCT8L2Q96SF2 557 aa14.31□□□□□ -0.12
VPS29-204ENST00000548259 ZNF607Q96SK3 696 aa14.31□□□□□ -0.12
VPS29-204ENST00000548259 BEX1Q9HBH7 125 aa14.31□□□□□ -0.12
VPS29-204ENST00000548259 CCNB1IP1Q9NPC3 277 aa14.31□□□□□ -0.12
VPS29-204ENST00000548259 MMP26Q9NRE1 261 aa14.31□□□□□ -0.12
VPS29-204ENST00000548259 PNPOQ9NVS9 261 aa14.31□□□□□ -0.12
VPS29-204ENST00000548259 ZIM2Q9NZV7 527 aa14.31□□□□□ -0.12
VPS29-204ENST00000548259 INSIG2Q9Y5U4 225 aa14.31□□□□□ -0.12
VPS29-204ENST00000548259 H3BSA7 217 aa14.3□□□□□ -0.12
VPS29-204ENST00000548259 TIMM23O14925 209 aa14.3□□□□□ -0.12
VPS29-204ENST00000548259 HDAC3O15379 428 aa14.3□□□□□ -0.12
VPS29-204ENST00000548259 SERPINB7O75635 380 aa14.3□□□□□ -0.12
VPS29-204ENST00000548259 ADH4P08319 380 aa14.3□□□□□ -0.12
VPS29-204ENST00000548259 NUDT7P0C024 238 aa14.3□□□□□ -0.12
VPS29-204ENST00000548259 BMP2P12643 396 aa14.3□□□□□ -0.12
VPS29-204ENST00000548259 MDKP21741 143 aaPredicted RBP14.3□□□□□ -0.12
VPS29-204ENST00000548259 STOMP27105 288 aa14.3□□□□□ -0.12
VPS29-204ENST00000548259 EPHA3P29320 983 aa14.3□□□□□ -0.12
VPS29-204ENST00000548259 MMP15P51511 669 aa14.3□□□□□ -0.12
VPS29-204ENST00000548259 TMEM155Q4W5P6 130 aa14.3□□□□□ -0.12
VPS29-204ENST00000548259 THEM4Q5T1C6 240 aa14.3□□□□□ -0.12
VPS29-204ENST00000548259 LRFN4Q6PJG9 635 aa14.3□□□□□ -0.12
VPS29-204ENST00000548259 OR52E2Q8NGJ4 325 aa14.3□□□□□ -0.12
VPS29-204ENST00000548259 OR4F5Q8NH21 305 aa14.3□□□□□ -0.12
VPS29-204ENST00000548259 VPS33AQ96AX1 596 aa14.3□□□□□ -0.12
VPS29-204ENST00000548259 C1orf147Q96MC9 270 aaPredicted RBP14.3□□□□□ -0.12
VPS29-204ENST00000548259 MMP27Q9H306 513 aa14.3□□□□□ -0.12
VPS29-204ENST00000548259 NANOGQ9H9S0 305 aa14.3□□□□□ -0.12
VPS29-204ENST00000548259 PATZ1Q9HBE1 687 aaKnown RBP14.3□□□□□ -0.12
VPS29-204ENST00000548259 NANSQ9NR45 359 aa14.3□□□□□ -0.12
VPS29-204ENST00000548259 ARMCX1Q9P291 453 aa14.3□□□□□ -0.12
VPS29-204ENST00000548259 IL20RAQ9UHF4 553 aa14.3□□□□□ -0.12
VPS29-204ENST00000548259 ZNF281Q9Y2X9 895 aa14.3□□□□□ -0.12
VPS29-204ENST00000548259 NOTCH1P46531 2555 aa14.29□□□□□ -0.12
VPS29-204ENST00000548259 LRRN3E7EW58 273 aa14.29□□□□□ -0.12
VPS29-204ENST00000548259 PPIAL4GP0DN37 164 aa14.29□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms