RNA–Protein interactions for RNA: ENST00000544301.6

VIM-209, Transcript of vimentin, humanhuman

APPRIS P1 TSL 1 (best)

Gene VIM, Length 2,135 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-209ENST00000544301 AKR7A2O43488 359 aa16.22■□□□□ 0.19
VIM-209ENST00000544301 OR2T1O43869 369 aa16.22■□□□□ 0.19
VIM-209ENST00000544301 ECDO95905 644 aaPredicted RBP16.22■□□□□ 0.19
VIM-209ENST00000544301 HEXBP07686 556 aa16.22■□□□□ 0.19
VIM-209ENST00000544301 IL11P20809 199 aa16.22■□□□□ 0.19
VIM-209ENST00000544301 SDHBP21912 280 aa16.22■□□□□ 0.19
VIM-209ENST00000544301 BLVRAP53004 296 aa16.22■□□□□ 0.19
VIM-209ENST00000544301 MELKQ14680 651 aa16.22■□□□□ 0.19
VIM-209ENST00000544301 BTBD16Q32M84 506 aa16.22■□□□□ 0.19
VIM-209ENST00000544301 SLC18B1Q6NT16 456 aa16.22■□□□□ 0.19
VIM-209ENST00000544301 C5orf46Q6UWT4 87 aa16.22■□□□□ 0.19
VIM-209ENST00000544301 ZNF679Q8IYX0 411 aa16.22■□□□□ 0.19
VIM-209ENST00000544301 EID2Q8N6I1 236 aa16.22■□□□□ 0.19
VIM-209ENST00000544301 OR8K3Q8NH51 312 aa16.22■□□□□ 0.19
VIM-209ENST00000544301 THAP3Q8WTV1 239 aaPredicted RBP16.22■□□□□ 0.19
VIM-209ENST00000544301 FCAMRQ8WWV6 532 aa16.22■□□□□ 0.19
VIM-209ENST00000544301 DEDD2Q8WXF8 326 aa16.22■□□□□ 0.19
VIM-209ENST00000544301 C8orf44Q96CB5 159 aa16.22■□□□□ 0.19
VIM-209ENST00000544301 NPAS1Q99742 590 aa16.22■□□□□ 0.19
VIM-209ENST00000544301 EMC7Q9NPA0 242 aa16.22■□□□□ 0.19
VIM-209ENST00000544301 FTCDNL1E5RQL4 147 aa16.22■□□□□ 0.19
VIM-209ENST00000544301 FABP7O15540 132 aa16.22■□□□□ 0.19
VIM-209ENST00000544301 GMDSO60547 372 aa16.22■□□□□ 0.19
VIM-209ENST00000544301 ZNF780AO75290 641 aaPredicted RBP16.22■□□□□ 0.19
VIM-209ENST00000544301 TIAF1O95411 115 aa16.22■□□□□ 0.19
VIM-209ENST00000544301 SPARCP09486 303 aa16.22■□□□□ 0.19
VIM-209ENST00000544301 CSRP1P21291 193 aaKnown RBP16.22■□□□□ 0.19
VIM-209ENST00000544301 ARRB1P49407 418 aaPredicted RBP16.22■□□□□ 0.19
VIM-209ENST00000544301 NKAIN1Q4KMZ8 207 aa16.22■□□□□ 0.19
VIM-209ENST00000544301 OR56B4Q8NH76 319 aa16.22■□□□□ 0.19
VIM-209ENST00000544301 RNF128Q8TEB7 428 aa16.22■□□□□ 0.19
VIM-209ENST00000544301 GIMAP1Q8WWP7 306 aa16.22■□□□□ 0.19
VIM-209ENST00000544301 TMEM234Q8WY98 164 aa16.22■□□□□ 0.19
VIM-209ENST00000544301 HYLS1Q96M11 299 aa16.22■□□□□ 0.19
VIM-209ENST00000544301 ACTR6Q9GZN1 396 aa16.22■□□□□ 0.19
VIM-209ENST00000544301 KLK11Q9UBX7 282 aa16.22■□□□□ 0.19
VIM-209ENST00000544301 ANKUB1A6NFN9 424 aa16.21■□□□□ 0.19
VIM-209ENST00000544301 H0YC42 278 aa16.21■□□□□ 0.19
VIM-209ENST00000544301 HLA-DOBP13765 273 aa16.21■□□□□ 0.19
VIM-209ENST00000544301 MNDAP41218 407 aa16.21■□□□□ 0.19
VIM-209ENST00000544301 ACY1Q03154 408 aa16.21■□□□□ 0.19
VIM-209ENST00000544301 ROM1Q03395 351 aa16.21■□□□□ 0.19
VIM-209ENST00000544301 ST3GAL2Q16842 350 aa16.21■□□□□ 0.19
VIM-209ENST00000544301 TMEM255AQ5JRV8 349 aa16.21■□□□□ 0.19
VIM-209ENST00000544301 TEX30Q5JUR7 227 aa16.21■□□□□ 0.19
VIM-209ENST00000544301 SFRP4Q6FHJ7 346 aaPredicted RBP16.21■□□□□ 0.19
VIM-209ENST00000544301 GRPEL2Q8TAA5 225 aa16.21■□□□□ 0.19
VIM-209ENST00000544301 HLA-CQ95604 372 aa16.21■□□□□ 0.19
VIM-209ENST00000544301 STMN3Q9NZ72 180 aa16.21■□□□□ 0.19
VIM-209ENST00000544301 ZNF222Q9UK12 451 aa16.21■□□□□ 0.19
VIM-209ENST00000544301 TNRC18O15417 2968 aaPredicted RBP16.21■□□□□ 0.19
VIM-209ENST00000544301 TMEM265A0A087WTH1 108 aa16.21■□□□□ 0.18
VIM-209ENST00000544301 PNPP00491 289 aa16.21■□□□□ 0.18
VIM-209ENST00000544301 DCNP07585 359 aaKnown RBP16.21■□□□□ 0.18
VIM-209ENST00000544301 TAS2R20P59543 309 aa16.21■□□□□ 0.18
VIM-209ENST00000544301 AP3S2P59780 193 aa16.21■□□□□ 0.18
VIM-209ENST00000544301 SNRPD2P62316 118 aaKnown RBP16.21■□□□□ 0.18
VIM-209ENST00000544301 ADAM8P78325 824 aa16.21■□□□□ 0.18
VIM-209ENST00000544301 MRPS10P82664 201 aaKnown RBP16.21■□□□□ 0.18
VIM-209ENST00000544301 PLA2G7Q13093 441 aa16.21■□□□□ 0.18
VIM-209ENST00000544301 ZNF227Q86WZ6 799 aa16.21■□□□□ 0.18
VIM-209ENST00000544301 KDM8Q8N371 416 aa16.21■□□□□ 0.18
VIM-209ENST00000544301 ST8SIA1Q92185 356 aa16.21■□□□□ 0.18
VIM-209ENST00000544301 OR6C1Q96RD1 312 aa16.21■□□□□ 0.18
VIM-209ENST00000544301 C20orf85Q9H1P6 137 aa16.21■□□□□ 0.18
VIM-209ENST00000544301 SUSD2Q9UGT4 822 aa16.21■□□□□ 0.18
VIM-209ENST00000544301 STEAP1Q9UHE8 339 aa16.21■□□□□ 0.18
VIM-209ENST00000544301 SLC22A13Q9Y226 551 aa16.21■□□□□ 0.18
VIM-209ENST00000544301 CPED1A4D0V7 1026 aa16.2■□□□□ 0.18
VIM-209ENST00000544301 SOX1O00570 391 aaPredicted RBP16.2■□□□□ 0.18
VIM-209ENST00000544301 ALOX12BO75342 701 aa16.2■□□□□ 0.18
VIM-209ENST00000544301 KHDRBS3O75525 346 aaKnown RBP16.2■□□□□ 0.18
VIM-209ENST00000544301 TMIGD3P0DMS9 266 aaPredicted RBP16.2■□□□□ 0.18
VIM-209ENST00000544301 PTHLHP12272 177 aa16.2■□□□□ 0.18
VIM-209ENST00000544301 CXCL3P19876 107 aa16.2■□□□□ 0.18
VIM-209ENST00000544301 C17orf67Q0P5P2 114 aa16.2■□□□□ 0.18
VIM-209ENST00000544301 C6orf183Q5T699 404 aa16.2■□□□□ 0.18
VIM-209ENST00000544301 GUSBP11Q6P575 273 aa16.2■□□□□ 0.18
VIM-209ENST00000544301 OR6S1Q8NH40 331 aa16.2■□□□□ 0.18
VIM-209ENST00000544301 TSEN15Q8WW01 171 aaKnown RBP16.2■□□□□ 0.18
VIM-209ENST00000544301 HGDQ93099 445 aa16.2■□□□□ 0.18
VIM-209ENST00000544301 MS4A3Q96HJ5 214 aa16.2■□□□□ 0.18
VIM-209ENST00000544301 PRO3102Q9H379 93 aa16.2■□□□□ 0.18
VIM-209ENST00000544301 HSPB11Q9Y547 144 aa16.2■□□□□ 0.18
VIM-209ENST00000544301 ANKRD20A5PA0PJZ0 165 aa16.19■□□□□ 0.18
VIM-209ENST00000544301 NAP1L6A6NFF2 107 aa16.19■□□□□ 0.18
VIM-209ENST00000544301 MS4A18H0YCH9 400 aa16.19■□□□□ 0.18
VIM-209ENST00000544301 SYPP08247 313 aa16.19■□□□□ 0.18
VIM-209ENST00000544301 SCAND1P57086 179 aa16.19■□□□□ 0.18
VIM-209ENST00000544301 PUDPQ08623 228 aa16.19■□□□□ 0.18
VIM-209ENST00000544301 MS4A18Q3C1V0 323 aa16.19■□□□□ 0.18
VIM-209ENST00000544301 KRT77Q7Z794 578 aa16.19■□□□□ 0.18
VIM-209ENST00000544301 C9orf62Q8N4C0 152 aa16.19■□□□□ 0.18
VIM-209ENST00000544301 BEST4Q8NFU0 473 aa16.19■□□□□ 0.18
VIM-209ENST00000544301 OR11G2Q8NGC1 345 aa16.19■□□□□ 0.18
VIM-209ENST00000544301 NUBPLQ8TB37 319 aa16.19■□□□□ 0.18
VIM-209ENST00000544301 THRSPQ92748 146 aa16.19■□□□□ 0.18
VIM-209ENST00000544301 PPP1R14AQ96A00 147 aa16.19■□□□□ 0.18
VIM-209ENST00000544301 NXPE2Q96DL1 559 aa16.19■□□□□ 0.18
VIM-209ENST00000544301 ABHD6Q9BV23 337 aa16.19■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 66.7 ms