RNA–Protein interactions for RNA: ENST00000530983.5

VPS28-213, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,337 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-213ENST00000530983 OR4D10Q8NGI6 311 aa17.42■□□□□ 0.38
VPS28-213ENST00000530983 ATOH1Q92858 354 aaPredicted RBP17.42■□□□□ 0.38
VPS28-213ENST00000530983 DNAJA3Q96EY1 480 aa17.42■□□□□ 0.38
VPS28-213ENST00000530983 TMPRSS13Q9BYE2 586 aa17.42■□□□□ 0.38
VPS28-213ENST00000530983 ADAM19Q9H013 955 aa17.42■□□□□ 0.38
VPS28-213ENST00000530983 SDHAF2Q9NX18 166 aa17.42■□□□□ 0.38
VPS28-213ENST00000530983 GGT3PA6NGU5 568 aa17.42■□□□□ 0.38
VPS28-213ENST00000530983 L7N2F9 121 aa17.42■□□□□ 0.38
VPS28-213ENST00000530983 GMFGO60234 142 aa17.42■□□□□ 0.38
VPS28-213ENST00000530983 CTAG2O75638 210 aa17.42■□□□□ 0.38
VPS28-213ENST00000530983 PPICP45877 212 aa17.42■□□□□ 0.38
VPS28-213ENST00000530983 RASGEF1BQ0VAM2 473 aa17.42■□□□□ 0.38
VPS28-213ENST00000530983 SERTAD2Q14140 314 aa17.42■□□□□ 0.38
VPS28-213ENST00000530983 RBMS2Q15434 407 aaKnown RBP17.42■□□□□ 0.38
VPS28-213ENST00000530983 ST8SIA4Q92187 359 aa17.42■□□□□ 0.38
VPS28-213ENST00000530983 DCBLD2Q96PD2 775 aa17.42■□□□□ 0.38
VPS28-213ENST00000530983 OR1F2PQ96R84 312 aa17.42■□□□□ 0.38
VPS28-213ENST00000530983 TMEM14AQ9Y6G1 99 aa17.42■□□□□ 0.38
VPS28-213ENST00000530983 MFSD2BA6NFX1 497 aa17.41■□□□□ 0.38
VPS28-213ENST00000530983 CHURC1-FNTBB4DL54 471 aa17.41■□□□□ 0.38
VPS28-213ENST00000530983 MCRIP1C9JLW8 97 aa17.41■□□□□ 0.38
VPS28-213ENST00000530983 TOR1AO14656 332 aa17.41■□□□□ 0.38
VPS28-213ENST00000530983 RGS11O94810 467 aa17.41■□□□□ 0.38
VPS28-213ENST00000530983 CAPZBP47756 277 aa17.41■□□□□ 0.38
VPS28-213ENST00000530983 FNTBP49356 437 aa17.41■□□□□ 0.38
VPS28-213ENST00000530983 LBX1P52954 281 aa17.41■□□□□ 0.38
VPS28-213ENST00000530983 KIAA0895LQ68EN5 471 aa17.41■□□□□ 0.38
VPS28-213ENST00000530983 NUP54Q7Z3B4 507 aa17.41■□□□□ 0.38
VPS28-213ENST00000530983 OTOSQ8NHW6 89 aa17.41■□□□□ 0.38
VPS28-213ENST00000530983 OIT3Q8WWZ8 545 aa17.41■□□□□ 0.38
VPS28-213ENST00000530983 ADOQ96SZ5 270 aa17.41■□□□□ 0.38
VPS28-213ENST00000530983 MMP17Q9ULZ9 603 aa17.41■□□□□ 0.38
VPS28-213ENST00000530983 C17orf51A8MQB3 221 aa17.41■□□□□ 0.38
VPS28-213ENST00000530983 HIST1H2ABP04908 130 aa17.41■□□□□ 0.38
VPS28-213ENST00000530983 ITGA5P08648 1049 aa17.41■□□□□ 0.38
VPS28-213ENST00000530983 C4BPBP20851 252 aa17.41■□□□□ 0.38
VPS28-213ENST00000530983 CFPP27918 469 aa17.41■□□□□ 0.38
VPS28-213ENST00000530983 CD1CP29017 333 aa17.41■□□□□ 0.38
VPS28-213ENST00000530983 FAUP35544 74 aaKnown RBP17.41■□□□□ 0.38
VPS28-213ENST00000530983 GUCA2AQ02747 115 aa17.41■□□□□ 0.38
VPS28-213ENST00000530983 ZNF117Q03924 483 aa17.41■□□□□ 0.38
VPS28-213ENST00000530983 C2orf68Q2NKX9 166 aa17.41■□□□□ 0.38
VPS28-213ENST00000530983 CHCHD2P9Q5T1J5 151 aaPredicted RBP17.41■□□□□ 0.38
VPS28-213ENST00000530983 YOD1Q5VVQ6 348 aaPredicted RBP17.41■□□□□ 0.38
VPS28-213ENST00000530983 FAM198BQ6UWH4 519 aa17.41■□□□□ 0.38
VPS28-213ENST00000530983 C3P1Q6ZMU1 363 aa17.41■□□□□ 0.38
VPS28-213ENST00000530983 HIST3H2AQ7L7L0 130 aa17.41■□□□□ 0.38
VPS28-213ENST00000530983 PRR22Q8IZ63 422 aa17.41■□□□□ 0.38
VPS28-213ENST00000530983 OR6M1Q8NGM8 313 aa17.41■□□□□ 0.38
VPS28-213ENST00000530983 HIST1H2ACQ93077 130 aa17.41■□□□□ 0.38
VPS28-213ENST00000530983 GINS4Q9BRT9 223 aa17.41■□□□□ 0.38
VPS28-213ENST00000530983 PELOQ9BRX2 385 aaKnown RBP17.41■□□□□ 0.38
VPS28-213ENST00000530983 SHARPINQ9H0F6 387 aa17.41■□□□□ 0.38
VPS28-213ENST00000530983 KCNK15Q9H427 330 aa17.41■□□□□ 0.38
VPS28-213ENST00000530983 PNO1Q9NRX1 252 aaKnown RBP17.41■□□□□ 0.38
VPS28-213ENST00000530983 ICOSLGO75144 302 aa17.4■□□□□ 0.38
VPS28-213ENST00000530983 POU3F4P49335 361 aa17.4■□□□□ 0.38
VPS28-213ENST00000530983 H2BFSP57053 126 aa17.4■□□□□ 0.38
VPS28-213ENST00000530983 C1QL3Q5VWW1 255 aa17.4■□□□□ 0.38
VPS28-213ENST00000530983 OR5M1Q8NGP8 315 aa17.4■□□□□ 0.38
VPS28-213ENST00000530983 LANCL2Q9NS86 450 aa17.4■□□□□ 0.38
VPS28-213ENST00000530983 CYP8B1Q9UNU6 501 aa17.4■□□□□ 0.38
VPS28-213ENST00000530983 PCDH15Q96QU1 1955 aa17.4■□□□□ 0.38
VPS28-213ENST00000530983 OR6C65A6NJZ3 312 aa17.39■□□□□ 0.38
VPS28-213ENST00000530983 HSPB2A8KAH6 182 aa17.39■□□□□ 0.38
VPS28-213ENST00000530983 SUSD5O60279 629 aa17.39■□□□□ 0.38
VPS28-213ENST00000530983 KDM4BO94953 1096 aa17.39■□□□□ 0.38
VPS28-213ENST00000530983 WISP1O95388 367 aa17.39■□□□□ 0.38
VPS28-213ENST00000530983 BGLAPP02818 100 aa17.39■□□□□ 0.38
VPS28-213ENST00000530983 CSF1P09603 554 aa17.39■□□□□ 0.38
VPS28-213ENST00000530983 CCR5P51681 352 aa17.39■□□□□ 0.38
VPS28-213ENST00000530983 TOMM34Q15785 309 aaPredicted RBP17.39■□□□□ 0.38
VPS28-213ENST00000530983 HSPB2Q16082 182 aa17.39■□□□□ 0.38
VPS28-213ENST00000530983 POMZP3Q6PJE2 187 aa17.39■□□□□ 0.38
VPS28-213ENST00000530983 TSEN15Q8WW01 171 aaKnown RBP17.39■□□□□ 0.38
VPS28-213ENST00000530983 OR8D2Q9GZM6 311 aa17.39■□□□□ 0.38
VPS28-213ENST00000530983 MS4A7Q9GZW8 240 aaPredicted RBP17.39■□□□□ 0.38
VPS28-213ENST00000530983 OPN4Q9UHM6 478 aa17.39■□□□□ 0.38
VPS28-213ENST00000530983 MSRAQ9UJ68 235 aa17.39■□□□□ 0.38
VPS28-213ENST00000530983 PLCL2Q9UPR0 1127 aa17.39■□□□□ 0.38
VPS28-213ENST00000530983 TRIOO75962 3097 aa17.39■□□□□ 0.37
VPS28-213ENST00000530983 PHYHO14832 338 aa17.39■□□□□ 0.37
VPS28-213ENST00000530983 FBXO45P0C2W1 286 aa17.39■□□□□ 0.37
VPS28-213ENST00000530983 MAOBP27338 520 aa17.39■□□□□ 0.37
VPS28-213ENST00000530983 CCKBRP32239 447 aa17.39■□□□□ 0.37
VPS28-213ENST00000530983 NUP62P37198 522 aaPredicted RBP17.39■□□□□ 0.37
VPS28-213ENST00000530983 DLX5P56178 289 aa17.39■□□□□ 0.37
VPS28-213ENST00000530983 CCINQ13939 588 aa17.39■□□□□ 0.37
VPS28-213ENST00000530983 NKAIN2Q5VXU1 208 aa17.39■□□□□ 0.37
VPS28-213ENST00000530983 ASPHD2Q6ICH7 369 aa17.39■□□□□ 0.37
VPS28-213ENST00000530983 FDX2Q6P4F2 183 aa17.39■□□□□ 0.37
VPS28-213ENST00000530983 SLC35D2Q76EJ3 337 aa17.39■□□□□ 0.37
VPS28-213ENST00000530983 SLC46A1Q96NT5 459 aa17.39■□□□□ 0.37
VPS28-213ENST00000530983 FOXN4Q96NZ1 517 aa17.39■□□□□ 0.37
VPS28-213ENST00000530983 OR8B4Q96RC9 309 aa17.39■□□□□ 0.37
VPS28-213ENST00000530983 LAT2Q9GZY6 243 aa17.39■□□□□ 0.37
VPS28-213ENST00000530983 ELOVL3Q9HB03 270 aa17.39■□□□□ 0.37
VPS28-213ENST00000530983 ZC4H2Q9NQZ6 224 aa17.39■□□□□ 0.37
VPS28-213ENST00000530983 MED9Q9NWA0 146 aa17.39■□□□□ 0.37
VPS28-213ENST00000530983 TAS2R8Q9NYW2 309 aa17.39■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms