RNA–Protein interactions for RNA: ENST00000529637.5

USP48-213, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 3,228 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-213ENST00000529637 IER3IP1Q9Y5U9 82 aa12.9□□□□□ -0.34
USP48-213ENST00000529637 A0A0A6YYC8 382 aaPredicted RBP12.89□□□□□ -0.35
USP48-213ENST00000529637 OR5H14A6NHG9 310 aa12.89□□□□□ -0.35
USP48-213ENST00000529637 I3L1I5 382 aaPredicted RBP12.89□□□□□ -0.35
USP48-213ENST00000529637 BRINP1O60477 761 aa12.89□□□□□ -0.35
USP48-213ENST00000529637 CELA2BP08218 269 aaPredicted RBP12.89□□□□□ -0.35
USP48-213ENST00000529637 RAB40ALP0C0E4 278 aa12.89□□□□□ -0.35
USP48-213ENST00000529637 SMIM10L1P0DMW3 83 aa12.89□□□□□ -0.35
USP48-213ENST00000529637 MAPK3P27361 379 aaPredicted RBP12.89□□□□□ -0.35
USP48-213ENST00000529637 CTHP32929 405 aa12.89□□□□□ -0.35
USP48-213ENST00000529637 TAF13Q15543 124 aa12.89□□□□□ -0.35
USP48-213ENST00000529637 RPL13AP3Q6NVV1 102 aa12.89□□□□□ -0.35
USP48-213ENST00000529637 TMPRSS11FQ6ZWK6 438 aa12.89□□□□□ -0.35
USP48-213ENST00000529637 TMPRSS9Q7Z410 1059 aa12.89□□□□□ -0.35
USP48-213ENST00000529637 OR1M1Q8NGA1 313 aa12.89□□□□□ -0.35
USP48-213ENST00000529637 OR6N1Q8NGY5 312 aa12.89□□□□□ -0.35
USP48-213ENST00000529637 RAB40AQ8WXH6 277 aa12.89□□□□□ -0.35
USP48-213ENST00000529637 ELSPBP1Q96BH3 223 aa12.89□□□□□ -0.35
USP48-213ENST00000529637 SCARF2Q96GP6 870 aaPredicted RBP12.89□□□□□ -0.35
USP48-213ENST00000529637 SMIM10Q96HG1 83 aa12.89□□□□□ -0.35
USP48-213ENST00000529637 LYRM4Q9HD34 91 aa12.89□□□□□ -0.35
USP48-213ENST00000529637 DHCR7Q9UBM7 475 aaKnown RBP12.89□□□□□ -0.35
USP48-213ENST00000529637 TRAV8-7A0A075B6U6 113 aa12.89□□□□□ -0.35
USP48-213ENST00000529637 RNF222A6NCQ9 220 aa12.89□□□□□ -0.35
USP48-213ENST00000529637 CTSEP14091 401 aa12.89□□□□□ -0.35
USP48-213ENST00000529637 LTBQ06643 244 aa12.89□□□□□ -0.35
USP48-213ENST00000529637 MICBQ29980 383 aa12.89□□□□□ -0.35
USP48-213ENST00000529637 FHL5Q5TD97 284 aa12.89□□□□□ -0.35
USP48-213ENST00000529637 SYS1Q8N2H4 156 aa12.89□□□□□ -0.35
USP48-213ENST00000529637 OR13H1Q8NG92 308 aa12.89□□□□□ -0.35
USP48-213ENST00000529637 GAL3ST1Q99999 423 aa12.89□□□□□ -0.35
USP48-213ENST00000529637 PILRAQ9UKJ1 303 aa12.89□□□□□ -0.35
USP48-213ENST00000529637 ICAM5Q9UMF0 924 aa12.89□□□□□ -0.35
USP48-213ENST00000529637 ZNF281Q9Y2X9 895 aa12.89□□□□□ -0.35
USP48-213ENST00000529637 CYR61O00622 381 aa12.88□□□□□ -0.35
USP48-213ENST00000529637 SGCEO43556 437 aa12.88□□□□□ -0.35
USP48-213ENST00000529637 GMFGO60234 142 aa12.88□□□□□ -0.35
USP48-213ENST00000529637 AKT2P31751 481 aa12.88□□□□□ -0.35
USP48-213ENST00000529637 SNRPEP62304 92 aaKnown RBP12.88□□□□□ -0.35
USP48-213ENST00000529637 ACTA2P62736 377 aa12.88□□□□□ -0.35
USP48-213ENST00000529637 ACTG2P63267 376 aa12.88□□□□□ -0.35
USP48-213ENST00000529637 BLOC1S1P78537 153 aa12.88□□□□□ -0.35
USP48-213ENST00000529637 SNTB1Q13884 538 aaKnown RBP12.88□□□□□ -0.35
USP48-213ENST00000529637 CA13Q8N1Q1 262 aa12.88□□□□□ -0.35
USP48-213ENST00000529637 BAHD1Q8TBE0 780 aaPredicted RBP12.88□□□□□ -0.35
USP48-213ENST00000529637 SLC37A2Q8TED4 501 aa12.88□□□□□ -0.35
USP48-213ENST00000529637 NMNAT3Q96T66 252 aa12.88□□□□□ -0.35
USP48-213ENST00000529637 STACQ99469 402 aa12.88□□□□□ -0.35
USP48-213ENST00000529637 PIGMQ9H3S5 423 aa12.88□□□□□ -0.35
USP48-213ENST00000529637 MKL2Q9ULH7 1088 aa12.88□□□□□ -0.35
USP48-213ENST00000529637 EML5Q05BV3 1969 aa12.88□□□□□ -0.35
USP48-213ENST00000529637 TRIOO75962 3097 aa12.88□□□□□ -0.35
USP48-213ENST00000529637 KANTRA0A1W2PQU2 76 aa12.88□□□□□ -0.35
USP48-213ENST00000529637 HRKO00198 91 aa12.88□□□□□ -0.35
USP48-213ENST00000529637 TO15178 435 aa12.88□□□□□ -0.35
USP48-213ENST00000529637 APBB3O95704 486 aa12.88□□□□□ -0.35
USP48-213ENST00000529637 FABP1P07148 127 aa12.88□□□□□ -0.35
USP48-213ENST00000529637 PTGFRP43088 359 aa12.88□□□□□ -0.35
USP48-213ENST00000529637 PLEKHN1Q494U1 663 aaPredicted RBP12.88□□□□□ -0.35
USP48-213ENST00000529637 PAN3Q58A45 887 aaKnown RBP12.88□□□□□ -0.35
USP48-213ENST00000529637 H3F3CQ6NXT2 135 aa12.88□□□□□ -0.35
USP48-213ENST00000529637 DNM1P46Q6ZS02 220 aa12.88□□□□□ -0.35
USP48-213ENST00000529637 KCNRGQ8N5I3 272 aa12.88□□□□□ -0.35
USP48-213ENST00000529637 STEAP2Q8NFT2 490 aa12.88□□□□□ -0.35
USP48-213ENST00000529637 OR10AC1Q8NH08 325 aa12.88□□□□□ -0.35
USP48-213ENST00000529637 RSC1A1Q92681 617 aa12.88□□□□□ -0.35
USP48-213ENST00000529637 FBXO17Q96EF6 278 aa12.88□□□□□ -0.35
USP48-213ENST00000529637 DNAJA3Q96EY1 480 aa12.88□□□□□ -0.35
USP48-213ENST00000529637 SPACA7Q96KW9 195 aa12.88□□□□□ -0.35
USP48-213ENST00000529637 NKX2-4Q9H2Z4 354 aa12.88□□□□□ -0.35
USP48-213ENST00000529637 GSN-AS1Q9NRJ2 163 aa12.88□□□□□ -0.35
USP48-213ENST00000529637 C14orf105Q9NVL8 296 aa12.88□□□□□ -0.35
USP48-213ENST00000529637 EYSQ5T1H1 3165 aa12.88□□□□□ -0.35
USP48-213ENST00000529637 TRBV23-1A0A0A0MS06 115 aa12.88□□□□□ -0.35
USP48-213ENST00000529637 TCRBV21S2A2A0A5A6 115 aa12.88□□□□□ -0.35
USP48-213ENST00000529637 B4DGG1 531 aa12.88□□□□□ -0.35
USP48-213ENST00000529637 OR4E1P0C645 316 aa12.88□□□□□ -0.35
USP48-213ENST00000529637 MRPS10P82664 201 aaKnown RBP12.88□□□□□ -0.35
USP48-213ENST00000529637 DHRS7BQ6IAN0 325 aaPredicted RBP12.88□□□□□ -0.35
USP48-213ENST00000529637 LIN54Q6MZP7 749 aa12.88□□□□□ -0.35
USP48-213ENST00000529637 SLC2A12Q8TD20 617 aa12.88□□□□□ -0.35
USP48-213ENST00000529637 HSPA12BQ96MM6 686 aa12.88□□□□□ -0.35
USP48-213ENST00000529637 GABRG3Q99928 467 aa12.88□□□□□ -0.35
USP48-213ENST00000529637 TCF7L1Q9HCS4 588 aa12.88□□□□□ -0.35
USP48-213ENST00000529637 FAM60AQ9NP50 221 aa12.88□□□□□ -0.35
USP48-213ENST00000529637 A0A087WV62 115 aa12.87□□□□□ -0.35
USP48-213ENST00000529637 A0A0J9YY10 115 aa12.87□□□□□ -0.35
USP48-213ENST00000529637 A0A1B0GW55 424 aa12.87□□□□□ -0.35
USP48-213ENST00000529637 EPOPA6NHQ4 379 aa12.87□□□□□ -0.35
USP48-213ENST00000529637 MCIDASD6RGH6 385 aa12.87□□□□□ -0.35
USP48-213ENST00000529637 TNFSF14O43557 240 aa12.87□□□□□ -0.35
USP48-213ENST00000529637 AK1P00568 194 aa12.87□□□□□ -0.35
USP48-213ENST00000529637 FBXO45P0C2W1 286 aa12.87□□□□□ -0.35
USP48-213ENST00000529637 DUX4L2P0CJ85 424 aa12.87□□□□□ -0.35
USP48-213ENST00000529637 DUX4L3P0CJ86 424 aa12.87□□□□□ -0.35
USP48-213ENST00000529637 DUX4L4P0CJ87 422 aa12.87□□□□□ -0.35
USP48-213ENST00000529637 DUX4L5P0CJ88 424 aa12.87□□□□□ -0.35
USP48-213ENST00000529637 DUX4L6P0CJ89 424 aa12.87□□□□□ -0.35
USP48-213ENST00000529637 DUX4L7P0CJ90 424 aa12.87□□□□□ -0.35
USP48-213ENST00000529637 DCDP81605 110 aaKnown RBP12.87□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms