RNA–Protein interactions for RNA: ENST00000528455.5

CD44-228, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 687 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-228ENST00000528455 ZNF726A6NNF4 738 aa6.56□□□□□ -1.36
CD44-228ENST00000528455 CLCA1A8K7I4 914 aa6.56□□□□□ -1.36
CD44-228ENST00000528455 ZNF814B7Z6K7 855 aa6.56□□□□□ -1.36
CD44-228ENST00000528455 C11orf98E9PRG8 122 aa6.56□□□□□ -1.36
CD44-228ENST00000528455 SURF4O15260 269 aa6.56□□□□□ -1.36
CD44-228ENST00000528455 PPP1R3DO95685 299 aa6.56□□□□□ -1.36
CD44-228ENST00000528455 IFNGP01579 166 aa6.56□□□□□ -1.36
CD44-228ENST00000528455 CRHP06850 196 aa6.56□□□□□ -1.36
CD44-228ENST00000528455 FCGR2AP12318 317 aa6.56□□□□□ -1.36
CD44-228ENST00000528455 HLA-DOBP13765 273 aa6.56□□□□□ -1.36
CD44-228ENST00000528455 ACVR2AP27037 513 aa6.56□□□□□ -1.36
CD44-228ENST00000528455 TIMP3P35625 211 aa6.56□□□□□ -1.36
CD44-228ENST00000528455 CENPAP49450 140 aa6.56□□□□□ -1.36
CD44-228ENST00000528455 PCYT1AP49585 367 aa6.56□□□□□ -1.36
CD44-228ENST00000528455 CXCR4P61073 352 aa6.56□□□□□ -1.36
CD44-228ENST00000528455 ERVK-25P63136 954 aa6.56□□□□□ -1.36
CD44-228ENST00000528455 SRSF1Q07955 248 aaKnown RBP eCLIP6.56□□□□□ -1.36
CD44-228ENST00000528455 MRPL49Q13405 166 aaKnown RBP6.56□□□□□ -1.36
CD44-228ENST00000528455 PON3Q15166 354 aa6.56□□□□□ -1.36
CD44-228ENST00000528455 ACKR1Q16570 336 aa6.56□□□□□ -1.36
CD44-228ENST00000528455 PGGHGQ32M88 737 aa6.56□□□□□ -1.36
CD44-228ENST00000528455 CLEC12AQ5QGZ9 265 aa6.56□□□□□ -1.36
CD44-228ENST00000528455 THEM4Q5T1C6 240 aa6.56□□□□□ -1.36
CD44-228ENST00000528455 C6orf52Q5T4I8 152 aa6.56□□□□□ -1.36
CD44-228ENST00000528455 MEDAGQ5VYS4 303 aa6.56□□□□□ -1.36
CD44-228ENST00000528455 ZNF585AQ6P3V2 769 aa6.56□□□□□ -1.36
CD44-228ENST00000528455 SLC35D2Q76EJ3 337 aa6.56□□□□□ -1.36
CD44-228ENST00000528455 ADCK1Q86TW2 530 aa6.56□□□□□ -1.36
CD44-228ENST00000528455 GPAT4Q86UL3 456 aa6.56□□□□□ -1.36
CD44-228ENST00000528455 DOLPP1Q86YN1 238 aa6.56□□□□□ -1.36
CD44-228ENST00000528455 C8orf59Q8N0T1 100 aaPredicted RBP6.56□□□□□ -1.36
CD44-228ENST00000528455 MARVELD2Q8N4S9 558 aa6.56□□□□□ -1.36
CD44-228ENST00000528455 NPEPL1Q8NDH3 523 aa6.56□□□□□ -1.36
CD44-228ENST00000528455 OR9K2Q8NGE7 335 aa6.56□□□□□ -1.36
CD44-228ENST00000528455 OR4Q3Q8NH05 313 aa6.56□□□□□ -1.36
CD44-228ENST00000528455 FNDC9Q8TBE3 224 aa6.56□□□□□ -1.36
CD44-228ENST00000528455 RNF128Q8TEB7 428 aa6.56□□□□□ -1.36
CD44-228ENST00000528455 PTP4A1Q93096 173 aa6.56□□□□□ -1.36
CD44-228ENST00000528455 SLC25A44Q96H78 314 aaPredicted RBP6.56□□□□□ -1.36
CD44-228ENST00000528455 GMPPAQ96IJ6 420 aaPredicted RBP6.56□□□□□ -1.36
CD44-228ENST00000528455 PLEKHA8Q96JA3 519 aa6.56□□□□□ -1.36
CD44-228ENST00000528455 Q96M85 177 aa6.56□□□□□ -1.36
CD44-228ENST00000528455 RBP7Q96R05 134 aa6.56□□□□□ -1.36
CD44-228ENST00000528455 MRPL13Q9BYD1 178 aaKnown RBP6.56□□□□□ -1.36
CD44-228ENST00000528455 YTHDF1Q9BYJ9 559 aaKnown RBP6.56□□□□□ -1.36
CD44-228ENST00000528455 TP63Q9H3D4 680 aaPredicted RBP6.56□□□□□ -1.36
CD44-228ENST00000528455 PNPLA3Q9NST1 481 aa6.56□□□□□ -1.36
CD44-228ENST00000528455 IMPAD1Q9NX62 359 aa6.56□□□□□ -1.36
CD44-228ENST00000528455 TVP23BQ9NYZ1 205 aa6.56□□□□□ -1.36
CD44-228ENST00000528455 EMC3Q9P0I2 261 aa6.56□□□□□ -1.36
CD44-228ENST00000528455 H2AFY2Q9P0M6 372 aaPredicted RBP6.56□□□□□ -1.36
CD44-228ENST00000528455 IL20RAQ9UHF4 553 aa6.56□□□□□ -1.36
CD44-228ENST00000528455 ING1Q9UK53 422 aaPredicted RBP6.56□□□□□ -1.36
CD44-228ENST00000528455 SVILO95425 2214 aa6.56□□□□□ -1.36
CD44-228ENST00000528455 MBD3L4A6NDZ8 208 aaPredicted RBP6.55□□□□□ -1.36
CD44-228ENST00000528455 MBD3L3A6NE82 208 aaPredicted RBP6.55□□□□□ -1.36
CD44-228ENST00000528455 MBD3L5A6NJ08 208 aaPredicted RBP6.55□□□□□ -1.36
CD44-228ENST00000528455 SNTNA6NMZ2 147 aa6.55□□□□□ -1.36
CD44-228ENST00000528455 RIIAD1A6NNX1 92 aa6.55□□□□□ -1.36
CD44-228ENST00000528455 XKRYO14609 159 aa6.55□□□□□ -1.36
CD44-228ENST00000528455 TRAF3IP2O43734 574 aaPredicted RBP6.55□□□□□ -1.36
CD44-228ENST00000528455 TLX2O43763 284 aaPredicted RBP6.55□□□□□ -1.36
CD44-228ENST00000528455 AKAP8O43823 692 aaKnown RBP6.55□□□□□ -1.36
CD44-228ENST00000528455 SLC19A2O60779 497 aa6.55□□□□□ -1.36
CD44-228ENST00000528455 RAMP1O60894 148 aa6.55□□□□□ -1.36
CD44-228ENST00000528455 AQP8O94778 261 aa6.55□□□□□ -1.36
CD44-228ENST00000528455 ZNF432O94892 652 aa6.55□□□□□ -1.36
CD44-228ENST00000528455 TGM6O95932 706 aa6.55□□□□□ -1.36
CD44-228ENST00000528455 NR2C1P13056 603 aa6.55□□□□□ -1.36
CD44-228ENST00000528455 HIST1H1CP16403 213 aaKnown RBP6.55□□□□□ -1.36
CD44-228ENST00000528455 ABOP16442 354 aa6.55□□□□□ -1.36
CD44-228ENST00000528455 GABRB1P18505 474 aa6.55□□□□□ -1.36
CD44-228ENST00000528455 PAICSP22234 425 aaKnown RBP6.55□□□□□ -1.36
CD44-228ENST00000528455 ACVR1BP36896 505 aa6.55□□□□□ -1.36
CD44-228ENST00000528455 CDKN2AP42771 156 aaKnown RBP6.55□□□□□ -1.36
CD44-228ENST00000528455 ZNF133P52736 654 aaPredicted RBP6.55□□□□□ -1.36
CD44-228ENST00000528455 POU3F1Q03052 451 aaPredicted RBP6.55□□□□□ -1.36
CD44-228ENST00000528455 ITGADQ13349 1161 aa6.55□□□□□ -1.36
CD44-228ENST00000528455 TMED1Q13445 227 aa6.55□□□□□ -1.36
CD44-228ENST00000528455 HIST3H3Q16695 136 aa6.55□□□□□ -1.36
CD44-228ENST00000528455 ABLIM2Q6H8Q1 611 aa6.55□□□□□ -1.36
CD44-228ENST00000528455 RTL6Q6ICC9 239 aa6.55□□□□□ -1.36
CD44-228ENST00000528455 TMEM211Q6ICI0 200 aa6.55□□□□□ -1.36
CD44-228ENST00000528455 JAZF1Q86VZ6 243 aa6.55□□□□□ -1.36
CD44-228ENST00000528455 CCDC71Q8IV32 467 aaPredicted RBP6.55□□□□□ -1.36
CD44-228ENST00000528455 MCEMP1Q8IX19 187 aa6.55□□□□□ -1.36
CD44-228ENST00000528455 TCEANCQ8N8B7 351 aa6.55□□□□□ -1.36
CD44-228ENST00000528455 OR52E2Q8NGJ4 325 aa6.55□□□□□ -1.36
CD44-228ENST00000528455 OR5M9Q8NGP3 310 aa6.55□□□□□ -1.36
CD44-228ENST00000528455 MBD3L2Q8NHZ7 208 aaPredicted RBP6.55□□□□□ -1.36
CD44-228ENST00000528455 ZNF519Q8TB69 540 aa6.55□□□□□ -1.36
CD44-228ENST00000528455 TMEM163Q8TC26 289 aa6.55□□□□□ -1.36
CD44-228ENST00000528455 SSC4DQ8WTU2 575 aa6.55□□□□□ -1.36
CD44-228ENST00000528455 ASB10Q8WXI3 467 aa6.55□□□□□ -1.36
CD44-228ENST00000528455 RFKQ969G6 155 aa6.55□□□□□ -1.36
CD44-228ENST00000528455 RELTQ969Z4 430 aa6.55□□□□□ -1.36
CD44-228ENST00000528455 TMEM45BQ96B21 275 aa6.55□□□□□ -1.36
CD44-228ENST00000528455 TXNDC15Q96J42 360 aa6.55□□□□□ -1.36
CD44-228ENST00000528455 ZFP3Q96NJ6 502 aa6.55□□□□□ -1.36
CD44-228ENST00000528455 TRIB1Q96RU8 372 aa6.55□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms