RNA–Protein interactions for RNA: ENST00000528396.5

CAPN1-215, Transcript of calpain 1, human

TSL 4

Gene CAPN1, Length 571 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CAPN1-215	ENST00000528396	DNAJC8	O75937	253 aa	Predicted RBP	11.64	□□□□□ -0.55
CAPN1-215	ENST00000528396	SLC2A10	O95528	541 aa		11.64	□□□□□ -0.55
CAPN1-215	ENST00000528396	CELA3B	P08861	270 aa		11.64	□□□□□ -0.55
CAPN1-215	ENST00000528396	DANCR	P0C864	163 aa		11.64	□□□□□ -0.55
CAPN1-215	ENST00000528396	CD99	P14209	185 aa		11.64	□□□□□ -0.55
CAPN1-215	ENST00000528396	NPR2	P20594	1047 aa		11.64	□□□□□ -0.55
CAPN1-215	ENST00000528396	APOBEC3A	P31941	199 aa	Predicted RBP	11.64	□□□□□ -0.55
CAPN1-215	ENST00000528396	OMP	P47874	163 aa		11.64	□□□□□ -0.55
CAPN1-215	ENST00000528396	MS4A2	Q01362	244 aa		11.64	□□□□□ -0.55
CAPN1-215	ENST00000528396	GALK2	Q01415	458 aa		11.64	□□□□□ -0.55
CAPN1-215	ENST00000528396	PLP2	Q04941	152 aa		11.64	□□□□□ -0.55
CAPN1-215	ENST00000528396	FMOD	Q06828	376 aa		11.64	□□□□□ -0.55
CAPN1-215	ENST00000528396	TRAP1	Q12931	704 aa	Known RBP	11.64	□□□□□ -0.55
CAPN1-215	ENST00000528396	FLOT2	Q14254	428 aa		11.64	□□□□□ -0.55
CAPN1-215	ENST00000528396	SGCA	Q16586	387 aa		11.64	□□□□□ -0.55
CAPN1-215	ENST00000528396	HIST3H3	Q16695	136 aa		11.64	□□□□□ -0.55
CAPN1-215	ENST00000528396	PGGHG	Q32M88	737 aa		11.64	□□□□□ -0.55
CAPN1-215	ENST00000528396	VHLL	Q6RSH7	139 aa		11.64	□□□□□ -0.55
CAPN1-215	ENST00000528396	B3GLCT	Q6Y288	498 aa		11.64	□□□□□ -0.55
CAPN1-215	ENST00000528396	YTHDF3	Q7Z739	585 aa	Known RBP	11.64	□□□□□ -0.55
CAPN1-215	ENST00000528396	SKA3	Q8IX90	412 aa		11.64	□□□□□ -0.55
CAPN1-215	ENST00000528396	LRRC18	Q8N456	261 aa		11.64	□□□□□ -0.55
CAPN1-215	ENST00000528396	LINC00471	Q8N535	108 aa		11.64	□□□□□ -0.55
CAPN1-215	ENST00000528396	HDAC2	Q92769	488 aa	Known RBP	11.64	□□□□□ -0.55
CAPN1-215	ENST00000528396	KCNK17	Q96T54	332 aa		11.64	□□□□□ -0.55
CAPN1-215	ENST00000528396	SH3GL3	Q99963	347 aa		11.64	□□□□□ -0.55
CAPN1-215	ENST00000528396	TRAF4	Q9BUZ4	470 aa	Predicted RBP	11.64	□□□□□ -0.55
CAPN1-215	ENST00000528396	REEP1	Q9H902	201 aa		11.64	□□□□□ -0.55
CAPN1-215	ENST00000528396	SEC61A2	Q9H9S3	476 aa		11.64	□□□□□ -0.55
CAPN1-215	ENST00000528396	CCNB1IP1	Q9NPC3	277 aa		11.64	□□□□□ -0.55
CAPN1-215	ENST00000528396	CBLN4	Q9NTU7	201 aa		11.64	□□□□□ -0.55
CAPN1-215	ENST00000528396	IL20RA	Q9UHF4	553 aa		11.64	□□□□□ -0.55
CAPN1-215	ENST00000528396	ADAM18	Q9Y3Q7	739 aa		11.64	□□□□□ -0.55
CAPN1-215	ENST00000528396	RAI1	Q7Z5J4	1906 aa	Predicted RBP	11.63	□□□□□ -0.55
CAPN1-215	ENST00000528396	ACAN	P16112	2415 aa		11.63	□□□□□ -0.55
CAPN1-215	ENST00000528396		A0A1W2PPL8	197 aa		11.63	□□□□□ -0.55
CAPN1-215	ENST00000528396	TCRBV5S2	A0A599	114 aa		11.63	□□□□□ -0.55
CAPN1-215	ENST00000528396	ZNF503-AS2	A6NEH8	195 aa		11.63	□□□□□ -0.55
CAPN1-215	ENST00000528396	MGRN1	O60291	552 aa		11.63	□□□□□ -0.55
CAPN1-215	ENST00000528396	ATP5H	O75947	161 aa		11.63	□□□□□ -0.55
CAPN1-215	ENST00000528396	IGLV1-44	P01699	117 aa		11.63	□□□□□ -0.55
CAPN1-215	ENST00000528396	HOXB6	P17509	224 aa	Known RBP	11.63	□□□□□ -0.55
CAPN1-215	ENST00000528396	FPR3	P25089	353 aa		11.63	□□□□□ -0.55
CAPN1-215	ENST00000528396	NOS3	P29474	1203 aa		11.63	□□□□□ -0.55
CAPN1-215	ENST00000528396	SLC6A6	P31641	620 aa		11.63	□□□□□ -0.55
CAPN1-215	ENST00000528396	CDKN1A	P38936	164 aa		11.63	□□□□□ -0.55
CAPN1-215	ENST00000528396	LIMS1	P48059	325 aa		11.63	□□□□□ -0.55
CAPN1-215	ENST00000528396	RPS6KA3	P51812	740 aa		11.63	□□□□□ -0.55
CAPN1-215	ENST00000528396	ADAM8	P78325	824 aa		11.63	□□□□□ -0.55
CAPN1-215	ENST00000528396	HSF2	Q03933	536 aa		11.63	□□□□□ -0.55
CAPN1-215	ENST00000528396	NRN1L	Q496H8	165 aa		11.63	□□□□□ -0.55
CAPN1-215	ENST00000528396	IQCC	Q4KMZ1	466 aa		11.63	□□□□□ -0.55
CAPN1-215	ENST00000528396	C10orf128	Q5T292	105 aa		11.63	□□□□□ -0.55
CAPN1-215	ENST00000528396	GPR139	Q6DWJ6	353 aa		11.63	□□□□□ -0.55
CAPN1-215	ENST00000528396	SMARCD3	Q6STE5	483 aa		11.63	□□□□□ -0.55
CAPN1-215	ENST00000528396	DTX2	Q86UW9	622 aa		11.63	□□□□□ -0.55
CAPN1-215	ENST00000528396	SPATA24	Q86W54	205 aa		11.63	□□□□□ -0.55
CAPN1-215	ENST00000528396	LRRC75A	Q8NAA5	344 aa		11.63	□□□□□ -0.55
CAPN1-215	ENST00000528396	WFDC11	Q8NEX6	87 aa		11.63	□□□□□ -0.55
CAPN1-215	ENST00000528396	ZNF519	Q8TB69	540 aa		11.63	□□□□□ -0.55
CAPN1-215	ENST00000528396	GNPDA2	Q8TDQ7	276 aa		11.63	□□□□□ -0.55
CAPN1-215	ENST00000528396	FBXO17	Q96EF6	278 aa		11.63	□□□□□ -0.55
CAPN1-215	ENST00000528396	LRMDA	Q9H2I8	198 aa		11.63	□□□□□ -0.55
CAPN1-215	ENST00000528396	RERGL	Q9H628	205 aa		11.63	□□□□□ -0.55
CAPN1-215	ENST00000528396	SIAE	Q9HAT2	523 aa		11.63	□□□□□ -0.55
CAPN1-215	ENST00000528396	B3GNT2	Q9NY97	397 aa		11.63	□□□□□ -0.55
CAPN1-215	ENST00000528396	SIGLEC7	Q9Y286	467 aa		11.63	□□□□□ -0.55
CAPN1-215	ENST00000528396	PMF1-BGLAP	U3KQ54	211 aa		11.63	□□□□□ -0.55
CAPN1-215	ENST00000528396	IGHV2OR16-5	A0A0B4J2B6	119 aa		11.62	□□□□□ -0.55
CAPN1-215	ENST00000528396	TEX13C	A0A0J9YWL9	993 aa		11.62	□□□□□ -0.55
CAPN1-215	ENST00000528396	IQCM	A0A1B0GVH7	501 aa		11.62	□□□□□ -0.55
CAPN1-215	ENST00000528396	DHRS12	A0PJE2	317 aa		11.62	□□□□□ -0.55
CAPN1-215	ENST00000528396	AQP12B	A6NM10	295 aa		11.62	□□□□□ -0.55
CAPN1-215	ENST00000528396		H7C1C5	153 aa		11.62	□□□□□ -0.55
CAPN1-215	ENST00000528396	GNGT2	O14610	69 aa		11.62	□□□□□ -0.55
CAPN1-215	ENST00000528396	AHCYL1	O43865	530 aa		11.62	□□□□□ -0.55
CAPN1-215	ENST00000528396	CCNB2	O95067	398 aa		11.62	□□□□□ -0.55
CAPN1-215	ENST00000528396	PTH	P01270	115 aa		11.62	□□□□□ -0.55
CAPN1-215	ENST00000528396	PATE4	P0C8F1	98 aa		11.62	□□□□□ -0.55
CAPN1-215	ENST00000528396	RAP2A	P10114	183 aa		11.62	□□□□□ -0.55
CAPN1-215	ENST00000528396	SDHA	P31040	664 aa		11.62	□□□□□ -0.55
CAPN1-215	ENST00000528396	CDA	P32320	146 aa		11.62	□□□□□ -0.55
CAPN1-215	ENST00000528396	MAGEA2	P43356	314 aa		11.62	□□□□□ -0.55
CAPN1-215	ENST00000528396	SNRPD2	P62316	118 aa	Known RBP	11.62	□□□□□ -0.55
CAPN1-215	ENST00000528396	LCN6	P62502	163 aa		11.62	□□□□□ -0.55
CAPN1-215	ENST00000528396	MRPS34	P82930	218 aa	Known RBP	11.62	□□□□□ -0.55
CAPN1-215	ENST00000528396	KRR1	Q13601	381 aa	Known RBP	11.62	□□□□□ -0.55
CAPN1-215	ENST00000528396	FHL1	Q13642	323 aa		11.62	□□□□□ -0.55
CAPN1-215	ENST00000528396	DAG1	Q14118	895 aa		11.62	□□□□□ -0.55
CAPN1-215	ENST00000528396	RAB39A	Q14964	217 aa		11.62	□□□□□ -0.55
CAPN1-215	ENST00000528396	OR2T5	Q6IEZ7	315 aa		11.62	□□□□□ -0.55
CAPN1-215	ENST00000528396	DPY19L2P2	Q6ZN68	376 aa		11.62	□□□□□ -0.55
CAPN1-215	ENST00000528396	ZER1	Q7Z7L7	766 aa		11.62	□□□□□ -0.55
CAPN1-215	ENST00000528396	ADCK1	Q86TW2	530 aa		11.62	□□□□□ -0.55
CAPN1-215	ENST00000528396	JAZF1	Q86VZ6	243 aa		11.62	□□□□□ -0.55
CAPN1-215	ENST00000528396	AQP12A	Q8IXF9	295 aa		11.62	□□□□□ -0.55
CAPN1-215	ENST00000528396	OR52L1	Q8NGH7	329 aa		11.62	□□□□□ -0.55
CAPN1-215	ENST00000528396	OR2T29	Q8NH02	315 aa		11.62	□□□□□ -0.55
CAPN1-215	ENST00000528396	HTRA1	Q92743	480 aa		11.62	□□□□□ -0.55
CAPN1-215	ENST00000528396	MS4A3	Q96HJ5	214 aa		11.62	□□□□□ -0.55

Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms