RNA–Protein interactions for RNA: ENST00000527889.5

CD44-226, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-226ENST00000527889 APOOLQ6UXV4 268 aa3.76□□□□□ -1.81
CD44-226ENST00000527889 HSDL2Q6YN16 418 aa3.76□□□□□ -1.81
CD44-226ENST00000527889 Q6ZRM9 215 aa3.76□□□□□ -1.81
CD44-226ENST00000527889 GDF7Q7Z4P5 450 aa3.76□□□□□ -1.81
CD44-226ENST00000527889 FJX1Q86VR8 437 aa3.76□□□□□ -1.81
CD44-226ENST00000527889 SLC34A3Q8N130 599 aa3.76□□□□□ -1.81
CD44-226ENST00000527889 ZNF441Q8N8Z8 693 aa3.76□□□□□ -1.81
CD44-226ENST00000527889 POGLUT1Q8NBL1 392 aa3.76□□□□□ -1.81
CD44-226ENST00000527889 AQP11Q8NBQ7 271 aa3.76□□□□□ -1.81
CD44-226ENST00000527889 APCDD1LQ8NCL9 501 aa3.76□□□□□ -1.81
CD44-226ENST00000527889 MORN4Q8NDC4 146 aa3.76□□□□□ -1.81
CD44-226ENST00000527889 ZNF555Q8NEP9 628 aa3.76□□□□□ -1.81
CD44-226ENST00000527889 B3GNT7Q8NFL0 401 aa3.76□□□□□ -1.81
CD44-226ENST00000527889 OR2Y1Q8NGV0 311 aa3.76□□□□□ -1.81
CD44-226ENST00000527889 OR4C3Q8NH37 302 aa3.76□□□□□ -1.81
CD44-226ENST00000527889 ZNF671Q8TAW3 534 aa3.76□□□□□ -1.81
CD44-226ENST00000527889 SLC7A13Q8TCU3 470 aa3.76□□□□□ -1.81
CD44-226ENST00000527889 ADAMTS16Q8TE57 1224 aa3.76□□□□□ -1.81
CD44-226ENST00000527889 GRHL3Q8TE85 626 aa3.76□□□□□ -1.81
CD44-226ENST00000527889 RAB40AQ8WXH6 277 aa3.76□□□□□ -1.81
CD44-226ENST00000527889 OMA1Q96E52 524 aa3.76□□□□□ -1.81
CD44-226ENST00000527889 SLC41A3Q96GZ6 507 aa3.76□□□□□ -1.81
CD44-226ENST00000527889 PRR25Q96S07 402 aa3.76□□□□□ -1.81
CD44-226ENST00000527889 ADOQ96SZ5 270 aa3.76□□□□□ -1.81
CD44-226ENST00000527889 FEVQ99581 238 aa3.76□□□□□ -1.81
CD44-226ENST00000527889 LPAR4Q99677 370 aa3.76□□□□□ -1.81
CD44-226ENST00000527889 NIPSNAP1Q9BPW8 284 aa3.76□□□□□ -1.81
CD44-226ENST00000527889 KLHDC3Q9BQ90 382 aa3.76□□□□□ -1.81
CD44-226ENST00000527889 DDA1Q9BW61 102 aa3.76□□□□□ -1.81
CD44-226ENST00000527889 ANKRD60Q9BZ19 345 aa3.76□□□□□ -1.81
CD44-226ENST00000527889 SLC26A1Q9H2B4 701 aa3.76□□□□□ -1.81
CD44-226ENST00000527889 WDR54Q9H977 334 aa3.76□□□□□ -1.81
CD44-226ENST00000527889 C12orf10Q9HB07 376 aa3.76□□□□□ -1.81
CD44-226ENST00000527889 CENPMQ9NSP4 180 aa3.76□□□□□ -1.81
CD44-226ENST00000527889 FAM118AQ9NWS6 357 aa3.76□□□□□ -1.81
CD44-226ENST00000527889 PAQR5Q9NXK6 330 aaPredicted RBP3.76□□□□□ -1.81
CD44-226ENST00000527889 KLHL28Q9NXS3 571 aa3.76□□□□□ -1.81
CD44-226ENST00000527889 MRPL39Q9NYK5 338 aaKnown RBP3.76□□□□□ -1.81
CD44-226ENST00000527889 C19orf25Q9UFG5 118 aaPredicted RBP3.76□□□□□ -1.81
CD44-226ENST00000527889 ADAM18Q9Y3Q7 739 aa3.76□□□□□ -1.81
CD44-226ENST00000527889 HS3ST3B1Q9Y662 390 aa3.76□□□□□ -1.81
CD44-226ENST00000527889 MRPS18BQ9Y676 258 aaKnown RBP3.76□□□□□ -1.81
CD44-226ENST00000527889 HIVEP3Q5T1R4 2406 aa3.75□□□□□ -1.81
CD44-226ENST00000527889 CHD3Q12873 2000 aaKnown RBP3.75□□□□□ -1.81
CD44-226ENST00000527889 SHANK1Q9Y566 2161 aa3.75□□□□□ -1.81
CD44-226ENST00000527889 TRGV11A0A075B6L2 103 aa3.75□□□□□ -1.81
CD44-226ENST00000527889 A0A075B6Q4 140 aa3.75□□□□□ -1.81
CD44-226ENST00000527889 A0A087WUU8 490 aa3.75□□□□□ -1.81
CD44-226ENST00000527889 TEX13CA0A0J9YWL9 993 aa3.75□□□□□ -1.81
CD44-226ENST00000527889 LOC100130705A0A1B0GUX0 176 aa3.75□□□□□ -1.81
CD44-226ENST00000527889 A0A1B0GWA3 101 aa3.75□□□□□ -1.81
CD44-226ENST00000527889 TRAPPC13A5PLN9 417 aa3.75□□□□□ -1.81
CD44-226ENST00000527889 SERINC4A6NH21 518 aa3.75□□□□□ -1.81
CD44-226ENST00000527889 ZSCAN5BA6NJL1 495 aa3.75□□□□□ -1.81
CD44-226ENST00000527889 OR6C76A6NM76 312 aa3.75□□□□□ -1.81
CD44-226ENST00000527889 SNTNA6NMZ2 147 aa3.75□□□□□ -1.81
CD44-226ENST00000527889 C17orf100A8MU93 164 aa3.75□□□□□ -1.81
CD44-226ENST00000527889 KPNA4O00629 521 aaPredicted RBP3.75□□□□□ -1.81
CD44-226ENST00000527889 SLC30A4O14863 429 aa3.75□□□□□ -1.81
CD44-226ENST00000527889 SCO2O43819 266 aa3.75□□□□□ -1.81
CD44-226ENST00000527889 GPRIN2O60269 458 aa3.75□□□□□ -1.81
CD44-226ENST00000527889 TSPAN2O60636 221 aa3.75□□□□□ -1.81
CD44-226ENST00000527889 UGT2B11O75310 529 aa3.75□□□□□ -1.81
CD44-226ENST00000527889 KLF7O75840 302 aaPredicted RBP3.75□□□□□ -1.81
CD44-226ENST00000527889 SOX30O94993 753 aa3.75□□□□□ -1.81
CD44-226ENST00000527889 TNFSF15O95150 251 aa3.75□□□□□ -1.81
CD44-226ENST00000527889 LYPD3O95274 346 aa3.75□□□□□ -1.81
CD44-226ENST00000527889 SOX14O95416 240 aa3.75□□□□□ -1.81
CD44-226ENST00000527889 NADKO95544 446 aaPredicted RBP3.75□□□□□ -1.81
CD44-226ENST00000527889 ADAP00813 363 aa3.75□□□□□ -1.81
CD44-226ENST00000527889 CSTAP01040 98 aa3.75□□□□□ -1.81
CD44-226ENST00000527889 MBPP02686 304 aaPredicted RBP3.75□□□□□ -1.81
CD44-226ENST00000527889 GUSBP08236 651 aa3.75□□□□□ -1.81
CD44-226ENST00000527889 SMIM18P0DKX4 95 aa3.75□□□□□ -1.81
CD44-226ENST00000527889 COX6A1P12074 109 aa3.75□□□□□ -1.81
CD44-226ENST00000527889 PRKACAP17612 351 aa3.75□□□□□ -1.81
CD44-226ENST00000527889 TCN2P20062 427 aa3.75□□□□□ -1.81
CD44-226ENST00000527889 DRD5P21918 477 aa3.75□□□□□ -1.81
CD44-226ENST00000527889 F8A1P23610 371 aa3.75□□□□□ -1.81
CD44-226ENST00000527889 MMP11P24347 488 aa3.75□□□□□ -1.81
CD44-226ENST00000527889 ITPKBP27987 946 aa3.75□□□□□ -1.81
CD44-226ENST00000527889 POU1F1P28069 291 aa3.75□□□□□ -1.81
CD44-226ENST00000527889 ELK4P28324 431 aa3.75□□□□□ -1.81
CD44-226ENST00000527889 FMO3P31513 532 aa3.75□□□□□ -1.81
CD44-226ENST00000527889 CASP3P42574 277 aa3.75□□□□□ -1.81
CD44-226ENST00000527889 GPR4P46093 362 aa3.75□□□□□ -1.81
CD44-226ENST00000527889 UGT2B15P54855 530 aa3.75□□□□□ -1.81
CD44-226ENST00000527889 PSMD4P55036 377 aaKnown RBP3.75□□□□□ -1.81
CD44-226ENST00000527889 ATP5IP56385 69 aaPredicted RBP3.75□□□□□ -1.81
CD44-226ENST00000527889 FBXW4P57775 412 aa3.75□□□□□ -1.81
CD44-226ENST00000527889 SMIM11AP58511 58 aa3.75□□□□□ -1.81
CD44-226ENST00000527889 POLR2GP62487 172 aaKnown RBP eCLIP3.75□□□□□ -1.81
CD44-226ENST00000527889 ROR2Q01974 943 aaKnown RBP3.75□□□□□ -1.81
CD44-226ENST00000527889 CD47Q08722 323 aa3.75□□□□□ -1.81
CD44-226ENST00000527889 SCRN3Q0VDG4 424 aa3.75□□□□□ -1.81
CD44-226ENST00000527889 ST3GAL3Q11203 375 aa3.75□□□□□ -1.81
CD44-226ENST00000527889 AIMP2Q13155 320 aaKnown RBP3.75□□□□□ -1.81
CD44-226ENST00000527889 ALKBH1Q13686 389 aaKnown RBP3.75□□□□□ -1.81
CD44-226ENST00000527889 DGCR6Q14129 220 aa3.75□□□□□ -1.81
CD44-226ENST00000527889 TRAM2Q15035 370 aa3.75□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms