RNA–Protein interactions for RNA: ENST00000512946.5

LIMCH1-217, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,057 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-217ENST00000512946 AIFM1O95831 613 aa10.38□□□□□ -0.75
LIMCH1-217ENST00000512946 GASTP01350 101 aa10.38□□□□□ -0.75
LIMCH1-217ENST00000512946 APEHP13798 732 aaKnown RBP10.38□□□□□ -0.75
LIMCH1-217ENST00000512946 IGFBP4P22692 258 aa10.38□□□□□ -0.75
LIMCH1-217ENST00000512946 AKR1C3P42330 323 aa10.38□□□□□ -0.75
LIMCH1-217ENST00000512946 RBP2P50120 134 aa10.38□□□□□ -0.75
LIMCH1-217ENST00000512946 ISL1P61371 349 aa10.38□□□□□ -0.75
LIMCH1-217ENST00000512946 OLIG2Q13516 323 aa10.38□□□□□ -0.75
LIMCH1-217ENST00000512946 H2BFWTQ7Z2G1 175 aa10.38□□□□□ -0.75
LIMCH1-217ENST00000512946 LYG2Q86SG7 212 aa10.38□□□□□ -0.75
LIMCH1-217ENST00000512946 OR2M7Q8NG81 312 aa10.38□□□□□ -0.75
LIMCH1-217ENST00000512946 OR13C5Q8NGS8 318 aa10.38□□□□□ -0.75
LIMCH1-217ENST00000512946 OR2A1Q8NGT9 310 aa10.38□□□□□ -0.75
LIMCH1-217ENST00000512946 RIMS4Q9H426 269 aaPredicted RBP10.38□□□□□ -0.75
LIMCH1-217ENST00000512946 ZNF552Q9H707 407 aaPredicted RBP10.38□□□□□ -0.75
LIMCH1-217ENST00000512946 ARNT2Q9HBZ2 717 aa10.38□□□□□ -0.75
LIMCH1-217ENST00000512946 ZNF732B4DXR9 585 aa10.38□□□□□ -0.75
LIMCH1-217ENST00000512946 CTSLP07711 333 aa10.38□□□□□ -0.75
LIMCH1-217ENST00000512946 MARCH8Q5T0T0 291 aa10.38□□□□□ -0.75
LIMCH1-217ENST00000512946 ZNF343Q6P1L6 599 aa10.38□□□□□ -0.75
LIMCH1-217ENST00000512946 TMEM88Q6PEY1 159 aa10.38□□□□□ -0.75
LIMCH1-217ENST00000512946 AMIGO3Q86WK7 504 aa10.38□□□□□ -0.75
LIMCH1-217ENST00000512946 MFSD9Q8NBP5 474 aa10.38□□□□□ -0.75
LIMCH1-217ENST00000512946 CAPNS2Q96L46 248 aa10.38□□□□□ -0.75
LIMCH1-217ENST00000512946 GPR78Q96P69 363 aa10.38□□□□□ -0.75
LIMCH1-217ENST00000512946 SUCNR1Q9BXA5 334 aa10.38□□□□□ -0.75
LIMCH1-217ENST00000512946 TMEM184BQ9Y519 407 aaPredicted RBP10.38□□□□□ -0.75
LIMCH1-217ENST00000512946 IGKV6D-41A0A0C4DH26 115 aa10.37□□□□□ -0.75
LIMCH1-217ENST00000512946 A0A1W2PPH5 198 aa10.37□□□□□ -0.75
LIMCH1-217ENST00000512946 CCSO14618 274 aa10.37□□□□□ -0.75
LIMCH1-217ENST00000512946 ORM1P02763 201 aa10.37□□□□□ -0.75
LIMCH1-217ENST00000512946 OR10J1P30954 320 aa10.37□□□□□ -0.75
LIMCH1-217ENST00000512946 SHC2P98077 582 aa10.37□□□□□ -0.75
LIMCH1-217ENST00000512946 SEMG2Q02383 582 aa10.37□□□□□ -0.75
LIMCH1-217ENST00000512946 ZNF429Q86V71 674 aa10.37□□□□□ -0.75
LIMCH1-217ENST00000512946 CLEC4DQ8WXI8 215 aa10.37□□□□□ -0.75
LIMCH1-217ENST00000512946 OR5M11Q96RB7 305 aa10.37□□□□□ -0.75
LIMCH1-217ENST00000512946 TAAR9Q96RI9 348 aa10.37□□□□□ -0.75
LIMCH1-217ENST00000512946 TRIB1Q96RU8 372 aa10.37□□□□□ -0.75
LIMCH1-217ENST00000512946 TPPP3Q9BW30 176 aa10.37□□□□□ -0.75
LIMCH1-217ENST00000512946 ACPTQ9BZG2 426 aa10.37□□□□□ -0.75
LIMCH1-217ENST00000512946 SLC35B3Q9H1N7 401 aa10.37□□□□□ -0.75
LIMCH1-217ENST00000512946 A4GALTQ9NPC4 353 aa10.37□□□□□ -0.75
LIMCH1-217ENST00000512946 CXXC1Q9P0U4 656 aaPredicted RBP10.37□□□□□ -0.75
LIMCH1-217ENST00000512946 FAM183AA6NL82 134 aa10.37□□□□□ -0.75
LIMCH1-217ENST00000512946 FAM171A2A8MVW0 826 aa10.37□□□□□ -0.75
LIMCH1-217ENST00000512946 PIRO00625 290 aa10.37□□□□□ -0.75
LIMCH1-217ENST00000512946 GLCEO94923 617 aa10.37□□□□□ -0.75
LIMCH1-217ENST00000512946 CFHP08603 1231 aa10.37□□□□□ -0.75
LIMCH1-217ENST00000512946 RD3LP0DJH9 198 aa10.37□□□□□ -0.75
LIMCH1-217ENST00000512946 ZNF25P17030 456 aaPredicted RBP10.37□□□□□ -0.75
LIMCH1-217ENST00000512946 IKZF1Q13422 519 aa10.37□□□□□ -0.75
LIMCH1-217ENST00000512946 COL19A1Q14993 1142 aa10.37□□□□□ -0.75
LIMCH1-217ENST00000512946 TMEM201Q5SNT2 666 aa10.37□□□□□ -0.75
LIMCH1-217ENST00000512946 C9orf131Q5VYM1 1079 aa10.37□□□□□ -0.75
LIMCH1-217ENST00000512946 MFSD4AQ8N468 514 aa10.37□□□□□ -0.75
LIMCH1-217ENST00000512946 TCTN2Q96GX1 697 aa10.37□□□□□ -0.75
LIMCH1-217ENST00000512946 ZIC5Q96T25 663 aa10.37□□□□□ -0.75
LIMCH1-217ENST00000512946 ZNF593O00488 134 aaPredicted RBP10.37□□□□□ -0.75
LIMCH1-217ENST00000512946 TOX3O15405 576 aaPredicted RBP10.37□□□□□ -0.75
LIMCH1-217ENST00000512946 CA12O43570 354 aa10.37□□□□□ -0.75
LIMCH1-217ENST00000512946 SFTA3P0C7M3 94 aa10.37□□□□□ -0.75
LIMCH1-217ENST00000512946 TFAP2EQ6VUC0 442 aa10.37□□□□□ -0.75
LIMCH1-217ENST00000512946 ACVR1CQ8NER5 493 aa10.37□□□□□ -0.75
LIMCH1-217ENST00000512946 RXFP4Q8TDU9 374 aa10.37□□□□□ -0.75
LIMCH1-217ENST00000512946 PIGCQ92535 297 aa10.37□□□□□ -0.75
LIMCH1-217ENST00000512946 RPUSD4Q96CM3 377 aaKnown RBP10.37□□□□□ -0.75
LIMCH1-217ENST00000512946 SMIM12Q96EX1 92 aa10.37□□□□□ -0.75
LIMCH1-217ENST00000512946 FAM210BQ96KR6 192 aa10.37□□□□□ -0.75
LIMCH1-217ENST00000512946 ULBP2Q9BZM5 246 aa10.37□□□□□ -0.75
LIMCH1-217ENST00000512946 TMEM9BQ9NQ34 198 aa10.37□□□□□ -0.75
LIMCH1-217ENST00000512946 PRSS16Q9NQE7 514 aa10.37□□□□□ -0.75
LIMCH1-217ENST00000512946 SRPK3Q9UPE1 567 aa10.37□□□□□ -0.75
LIMCH1-217ENST00000512946 PCDHGA9Q9Y5G4 932 aaKnown RBP10.37□□□□□ -0.75
LIMCH1-217ENST00000512946 CCDC187A0A096LP49 1063 aa10.37□□□□□ -0.75
LIMCH1-217ENST00000512946 A0A1B0GTQ1 180 aa10.37□□□□□ -0.75
LIMCH1-217ENST00000512946 M0QYG6 137 aa10.37□□□□□ -0.75
LIMCH1-217ENST00000512946 STATHP02808 62 aa10.37□□□□□ -0.75
LIMCH1-217ENST00000512946 MMP11P24347 488 aa10.37□□□□□ -0.75
LIMCH1-217ENST00000512946 SELENBP1Q13228 472 aa10.37□□□□□ -0.75
LIMCH1-217ENST00000512946 ZNF528Q3MIS6 628 aa10.37□□□□□ -0.75
LIMCH1-217ENST00000512946 THNSL2Q86YJ6 484 aa10.37□□□□□ -0.75
LIMCH1-217ENST00000512946 CMTM8Q8IZV2 173 aa10.37□□□□□ -0.75
LIMCH1-217ENST00000512946 LMNTD1Q8N9Z9 388 aa10.37□□□□□ -0.75
LIMCH1-217ENST00000512946 ANKLE1Q8NAG6 615 aa10.37□□□□□ -0.75
LIMCH1-217ENST00000512946 SIRT7Q9NRC8 400 aa10.37□□□□□ -0.75
LIMCH1-217ENST00000512946 A0A1B0GTW7 788 aa10.36□□□□□ -0.75
LIMCH1-217ENST00000512946 A0A1W2PRU2 124 aa10.36□□□□□ -0.75
LIMCH1-217ENST00000512946 ADM5C9JUS6 153 aa10.36□□□□□ -0.75
LIMCH1-217ENST00000512946 STC2O76061 302 aa10.36□□□□□ -0.75
LIMCH1-217ENST00000512946 SORBS2O94875 1100 aaKnown RBP10.36□□□□□ -0.75
LIMCH1-217ENST00000512946 ZNF28P17035 718 aa10.36□□□□□ -0.75
LIMCH1-217ENST00000512946 STUMQ69YW2 141 aa10.36□□□□□ -0.75
LIMCH1-217ENST00000512946 FUNDC1Q8IVP5 155 aa10.36□□□□□ -0.75
LIMCH1-217ENST00000512946 TMEM123Q8N131 208 aa10.36□□□□□ -0.75
LIMCH1-217ENST00000512946 DTWD2Q8NBA8 298 aa10.36□□□□□ -0.75
LIMCH1-217ENST00000512946 RARRES3Q9UL19 164 aa10.36□□□□□ -0.75
LIMCH1-217ENST00000512946 ATXN7L1Q9ULK2 861 aaPredicted RBP10.36□□□□□ -0.75
LIMCH1-217ENST00000512946 A0A0B4J203 849 aa10.36□□□□□ -0.75
LIMCH1-217ENST00000512946 TBX19O60806 448 aa10.36□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms