RNA–Protein interactions for RNA: ENST00000498213.1

USP54-217, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 815 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-217ENST00000498213 FEN1P39748 380 aaKnown RBP3.35□□□□□ -1.87
USP54-217ENST00000498213 FRKP42685 505 aaPredicted RBP3.35□□□□□ -1.87
USP54-217ENST00000498213 MAGEA4P43358 317 aa3.35□□□□□ -1.87
USP54-217ENST00000498213 SLC6A8P48029 635 aa3.35□□□□□ -1.87
USP54-217ENST00000498213 EVX1P49640 407 aa3.35□□□□□ -1.87
USP54-217ENST00000498213 STARP49675 285 aa3.35□□□□□ -1.87
USP54-217ENST00000498213 P2RX1P51575 399 aa3.35□□□□□ -1.87
USP54-217ENST00000498213 SUCLG1P53597 346 aaKnown RBP3.35□□□□□ -1.87
USP54-217ENST00000498213 SH3BGRP55822 239 aaPredicted RBP3.35□□□□□ -1.87
USP54-217ENST00000498213 LRRC74AQ0VAA2 488 aa3.35□□□□□ -1.87
USP54-217ENST00000498213 TAB1Q15750 504 aa3.35□□□□□ -1.87
USP54-217ENST00000498213 EFNB3Q15768 340 aa3.35□□□□□ -1.87
USP54-217ENST00000498213 UAP1Q16222 522 aaPredicted RBP3.35□□□□□ -1.87
USP54-217ENST00000498213 CARTPTQ16568 116 aa3.35□□□□□ -1.87
USP54-217ENST00000498213 PLPPR5Q32ZL2 321 aa3.35□□□□□ -1.87
USP54-217ENST00000498213 IQCCQ4KMZ1 466 aa3.35□□□□□ -1.87
USP54-217ENST00000498213 TRMT12Q53H54 448 aaKnown RBP3.35□□□□□ -1.87
USP54-217ENST00000498213 TECRLQ5HYJ1 363 aa3.35□□□□□ -1.87
USP54-217ENST00000498213 DMRTC1Q5HYR2 192 aa3.35□□□□□ -1.87
USP54-217ENST00000498213 FBXW9Q5XUX1 488 aa3.35□□□□□ -1.87
USP54-217ENST00000498213 HBMQ6B0K9 141 aa3.35□□□□□ -1.87
USP54-217ENST00000498213 ADNP2Q6IQ32 1131 aa3.35□□□□□ -1.87
USP54-217ENST00000498213 C3orf33Q6P1S2 294 aa3.35□□□□□ -1.87
USP54-217ENST00000498213 SHQ1Q6PI26 577 aaKnown RBP3.35□□□□□ -1.87
USP54-217ENST00000498213 Q6ZSR9 355 aa3.35□□□□□ -1.87
USP54-217ENST00000498213 GPRIN3Q6ZVF9 776 aa3.35□□□□□ -1.87
USP54-217ENST00000498213 FCRLAQ7L513 359 aa3.35□□□□□ -1.87
USP54-217ENST00000498213 GALNT5Q7Z7M9 940 aa3.35□□□□□ -1.87
USP54-217ENST00000498213 LRRC34Q8IZ02 419 aa3.35□□□□□ -1.87
USP54-217ENST00000498213 MUC15Q8N387 334 aa3.35□□□□□ -1.87
USP54-217ENST00000498213 SYT14Q8NB59 555 aa3.35□□□□□ -1.87
USP54-217ENST00000498213 OR4F6Q8NGB9 312 aa3.35□□□□□ -1.87
USP54-217ENST00000498213 RFWD2Q8NHY2 731 aa3.35□□□□□ -1.87
USP54-217ENST00000498213 PSMA8Q8TAA3 256 aa3.35□□□□□ -1.87
USP54-217ENST00000498213 PIGXQ8TBF5 258 aa3.35□□□□□ -1.87
USP54-217ENST00000498213 RDH11Q8TC12 318 aa3.35□□□□□ -1.87
USP54-217ENST00000498213 MAGEE2Q8TD90 523 aaPredicted RBP3.35□□□□□ -1.87
USP54-217ENST00000498213 ZFP90Q8TF47 636 aa3.35□□□□□ -1.87
USP54-217ENST00000498213 DUSP19Q8WTR2 217 aa3.35□□□□□ -1.87
USP54-217ENST00000498213 OSTF1Q92882 214 aa3.35□□□□□ -1.87
USP54-217ENST00000498213 S100PBPQ96BU1 408 aa3.35□□□□□ -1.87
USP54-217ENST00000498213 NXNL1Q96CM4 212 aa3.35□□□□□ -1.87
USP54-217ENST00000498213 ELP4Q96EB1 424 aa3.35□□□□□ -1.87
USP54-217ENST00000498213 L3HYPDHQ96EM0 354 aa3.35□□□□□ -1.87
USP54-217ENST00000498213 ARL5BQ96KC2 179 aa3.35□□□□□ -1.87
USP54-217ENST00000498213 ZIM3Q96PE6 472 aa3.35□□□□□ -1.87
USP54-217ENST00000498213 HBEGFQ99075 208 aa3.35□□□□□ -1.87
USP54-217ENST00000498213 SLC6A7Q99884 636 aa3.35□□□□□ -1.87
USP54-217ENST00000498213 INPP5KQ9BT40 448 aa3.35□□□□□ -1.87
USP54-217ENST00000498213 CACNG6Q9BXT2 260 aa3.35□□□□□ -1.87
USP54-217ENST00000498213 MRPL1Q9BYD6 325 aaKnown RBP3.35□□□□□ -1.87
USP54-217ENST00000498213 TXLNGYQ9BZA5 131 aa3.35□□□□□ -1.87
USP54-217ENST00000498213 NMUR2Q9GZQ4 415 aa3.35□□□□□ -1.87
USP54-217ENST00000498213 SLITRK2Q9H156 845 aa3.35□□□□□ -1.87
USP54-217ENST00000498213 DPH5Q9H2P9 285 aa3.35□□□□□ -1.87
USP54-217ENST00000498213 DSN1Q9H410 356 aa3.35□□□□□ -1.87
USP54-217ENST00000498213 EXOSC3Q9NQT5 275 aaKnown RBP3.35□□□□□ -1.87
USP54-217ENST00000498213 ZDHHC18Q9NUE0 388 aa3.35□□□□□ -1.87
USP54-217ENST00000498213 DDX28Q9NUL7 540 aaKnown RBP3.35□□□□□ -1.87
USP54-217ENST00000498213 MED17Q9NVC6 651 aa3.35□□□□□ -1.87
USP54-217ENST00000498213 ATAD3AQ9NVI7 634 aa3.35□□□□□ -1.87
USP54-217ENST00000498213 TAS2R16Q9NYV7 291 aa3.35□□□□□ -1.87
USP54-217ENST00000498213 FBXL3Q9UKT7 428 aa3.35□□□□□ -1.87
USP54-217ENST00000498213 SNX24Q9Y343 169 aa3.35□□□□□ -1.87
USP54-217ENST00000498213 RNF11Q9Y3C5 154 aa3.35□□□□□ -1.87
USP54-217ENST00000498213 KIAA1109Q2LD37 5005 aa3.34□□□□□ -1.87
USP54-217ENST00000498213 MED12LQ86YW9 2145 aa3.34□□□□□ -1.87
USP54-217ENST00000498213 A0A096LPI6 279 aa3.34□□□□□ -1.87
USP54-217ENST00000498213 TMEM114B3SHH9 223 aa3.34□□□□□ -1.87
USP54-217ENST00000498213 SHISA9B4DS77 424 aa3.34□□□□□ -1.87
USP54-217ENST00000498213 B9A039 149 aa3.34□□□□□ -1.87
USP54-217ENST00000498213 SLC28A1O00337 649 aa3.34□□□□□ -1.87
USP54-217ENST00000498213 MANBAO00462 879 aa3.34□□□□□ -1.87
USP54-217ENST00000498213 FAAHO00519 579 aa3.34□□□□□ -1.87
USP54-217ENST00000498213 SEC14L5O43304 696 aa3.34□□□□□ -1.87
USP54-217ENST00000498213 ZNF208O43345 1280 aa3.34□□□□□ -1.87
USP54-217ENST00000498213 KRT36O76013 467 aa3.34□□□□□ -1.87
USP54-217ENST00000498213 AQP8O94778 261 aa3.34□□□□□ -1.87
USP54-217ENST00000498213 PMS2P2O95744 297 aa3.34□□□□□ -1.87
USP54-217ENST00000498213 PDYNP01213 254 aa3.34□□□□□ -1.87
USP54-217ENST00000498213 CHRM4P08173 479 aa3.34□□□□□ -1.87
USP54-217ENST00000498213 VIMP08670 466 aaKnown RBP3.34□□□□□ -1.87
USP54-217ENST00000498213 ABHD2P08910 425 aa3.34□□□□□ -1.87
USP54-217ENST00000498213 SNRPAP09012 282 aaKnown RBP3.34□□□□□ -1.87
USP54-217ENST00000498213 ANXA4P09525 319 aaPredicted RBP3.34□□□□□ -1.87
USP54-217ENST00000498213 TACSTD2P09758 323 aa3.34□□□□□ -1.87
USP54-217ENST00000498213 ALOX5P09917 674 aa3.34□□□□□ -1.87
USP54-217ENST00000498213 ZNF23P17027 643 aa3.34□□□□□ -1.87
USP54-217ENST00000498213 ATP6V1C1P21283 382 aa3.34□□□□□ -1.87
USP54-217ENST00000498213 HMOX2P30519 316 aa3.34□□□□□ -1.87
USP54-217ENST00000498213 IL2RGP31785 369 aa3.34□□□□□ -1.87
USP54-217ENST00000498213 HSD17B3P37058 310 aa3.34□□□□□ -1.87
USP54-217ENST00000498213 ARL1P40616 181 aaPredicted RBP3.34□□□□□ -1.87
USP54-217ENST00000498213 APOBEC1P41238 236 aaKnown RBP3.34□□□□□ -1.87
USP54-217ENST00000498213 CENPAP49450 140 aa3.34□□□□□ -1.87
USP54-217ENST00000498213 PPOXP50336 477 aa3.34□□□□□ -1.87
USP54-217ENST00000498213 NCBP2P52298 156 aaKnown RBP eCLIP3.34□□□□□ -1.87
USP54-217ENST00000498213 DVL1P1P54792 670 aaPredicted RBP3.34□□□□□ -1.87
USP54-217ENST00000498213 CDH11P55287 796 aa3.34□□□□□ -1.87
USP54-217ENST00000498213 CLDN20P56880 219 aa3.34□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms