RNA–Protein interactions for RNA: ENST00000491233.1

COL6A3-211, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 3

Gene COL6A3, Length 652 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-211ENST00000491233 DPPA2Q7Z7J5 298 aa11.69□□□□□ -0.54
COL6A3-211ENST00000491233 SYT14Q8NB59 555 aa11.69□□□□□ -0.54
COL6A3-211ENST00000491233 RBM15BQ8NDT2 890 aaKnown RBP11.69□□□□□ -0.54
COL6A3-211ENST00000491233 OR8J3Q8NGG0 315 aa11.69□□□□□ -0.54
COL6A3-211ENST00000491233 CLDND2Q8NHS1 167 aa11.69□□□□□ -0.54
COL6A3-211ENST00000491233 TMEM239Q8WW34 195 aa11.69□□□□□ -0.54
COL6A3-211ENST00000491233 RDH5Q92781 318 aa11.69□□□□□ -0.54
COL6A3-211ENST00000491233 YIPF5Q969M3 257 aa11.69□□□□□ -0.54
COL6A3-211ENST00000491233 SGTBQ96EQ0 304 aa11.69□□□□□ -0.54
COL6A3-211ENST00000491233 SEPHS2Q99611 448 aa11.69□□□□□ -0.54
COL6A3-211ENST00000491233 SH3GL1Q99961 368 aa11.69□□□□□ -0.54
COL6A3-211ENST00000491233 ECSITQ9BQ95 431 aa11.69□□□□□ -0.54
COL6A3-211ENST00000491233 MRPL13Q9BYD1 178 aaKnown RBP11.69□□□□□ -0.54
COL6A3-211ENST00000491233 C1orf198Q9H425 327 aa11.69□□□□□ -0.54
COL6A3-211ENST00000491233 INIPQ9NRY2 104 aa11.69□□□□□ -0.54
COL6A3-211ENST00000491233 IQCMA0A1B0GVH7 501 aa11.68□□□□□ -0.54
COL6A3-211ENST00000491233 SLC22A23A1A5C7 686 aa11.68□□□□□ -0.54
COL6A3-211ENST00000491233 CENPBD1B2RD01 187 aa11.68□□□□□ -0.54
COL6A3-211ENST00000491233 TRMUO75648 421 aaKnown RBP11.68□□□□□ -0.54
COL6A3-211ENST00000491233 SLC2A10O95528 541 aa11.68□□□□□ -0.54
COL6A3-211ENST00000491233 SNAP29O95721 258 aa11.68□□□□□ -0.54
COL6A3-211ENST00000491233 CLPTM1O96005 669 aa11.68□□□□□ -0.54
COL6A3-211ENST00000491233 LCKP06239 509 aa11.68□□□□□ -0.54
COL6A3-211ENST00000491233 ACADSP16219 412 aa11.68□□□□□ -0.54
COL6A3-211ENST00000491233 OR1E2P47887 323 aa11.68□□□□□ -0.54
COL6A3-211ENST00000491233 DAP3P51398 398 aaKnown RBP11.68□□□□□ -0.54
COL6A3-211ENST00000491233 KLF3P57682 345 aaPredicted RBP11.68□□□□□ -0.54
COL6A3-211ENST00000491233 SF3A3Q12874 501 aaKnown RBP eCLIP11.68□□□□□ -0.54
COL6A3-211ENST00000491233 KLF10Q13118 480 aa11.68□□□□□ -0.54
COL6A3-211ENST00000491233 PIN1Q13526 163 aaPredicted RBP11.68□□□□□ -0.54
COL6A3-211ENST00000491233 NRN1LQ496H8 165 aa11.68□□□□□ -0.54
COL6A3-211ENST00000491233 LRRC23Q53EV4 343 aaPredicted RBP11.68□□□□□ -0.54
COL6A3-211ENST00000491233 COQ5Q5HYK3 327 aa11.68□□□□□ -0.54
COL6A3-211ENST00000491233 ERICH5Q6P6B1 374 aa11.68□□□□□ -0.54
COL6A3-211ENST00000491233 UGT2A3Q6UWM9 527 aa11.68□□□□□ -0.54
COL6A3-211ENST00000491233 MOSPD2Q8NHP6 518 aa11.68□□□□□ -0.54
COL6A3-211ENST00000491233 TSPAN32Q96QS1 320 aa11.68□□□□□ -0.54
COL6A3-211ENST00000491233 POLR2J2Q9GZM3 115 aaKnown RBP11.68□□□□□ -0.54
COL6A3-211ENST00000491233 POLR2J3Q9H1A7 115 aaKnown RBP11.68□□□□□ -0.54
COL6A3-211ENST00000491233 ZNF275Q9NSD4 429 aaPredicted RBP11.68□□□□□ -0.54
COL6A3-211ENST00000491233 ARGLU1Q9NWB6 273 aaPredicted RBP11.68□□□□□ -0.54
COL6A3-211ENST00000491233 TAAR3PQ9P1P4 343 aa11.68□□□□□ -0.54
COL6A3-211ENST00000491233 RIMS3Q9UJD0 308 aa11.68□□□□□ -0.54
COL6A3-211ENST00000491233 IGLV3-9A0A075B6K5 115 aa11.67□□□□□ -0.54
COL6A3-211ENST00000491233 BBIP1A8MTZ0 92 aa11.67□□□□□ -0.54
COL6A3-211ENST00000491233 FAM220BPB1ANY3 271 aa11.67□□□□□ -0.54
COL6A3-211ENST00000491233 B4DSR2 109 aa11.67□□□□□ -0.54
COL6A3-211ENST00000491233 FAM157AC9JC47 383 aa11.67□□□□□ -0.54
COL6A3-211ENST00000491233 WNT9BO14905 357 aa11.67□□□□□ -0.54
COL6A3-211ENST00000491233 PIP5K1CO60331 668 aa11.67□□□□□ -0.54
COL6A3-211ENST00000491233 RP2O75695 350 aa11.67□□□□□ -0.54
COL6A3-211ENST00000491233 PTHP01270 115 aa11.67□□□□□ -0.54
COL6A3-211ENST00000491233 MMP7P09237 267 aaPredicted RBP11.67□□□□□ -0.54
COL6A3-211ENST00000491233 TROVE2P10155 538 aaKnown RBP eCLIP11.67□□□□□ -0.54
COL6A3-211ENST00000491233 H2AFXP16104 143 aaPredicted RBP11.67□□□□□ -0.54
COL6A3-211ENST00000491233 PCMT1P22061 227 aa11.67□□□□□ -0.54
COL6A3-211ENST00000491233 MAGEB1P43366 347 aa11.67□□□□□ -0.54
COL6A3-211ENST00000491233 ZNF133P52736 654 aaPredicted RBP11.67□□□□□ -0.54
COL6A3-211ENST00000491233 HSF2Q03933 536 aa11.67□□□□□ -0.54
COL6A3-211ENST00000491233 GLO1Q04760 184 aa11.67□□□□□ -0.54
COL6A3-211ENST00000491233 PLP2Q04941 152 aa11.67□□□□□ -0.54
COL6A3-211ENST00000491233 FMODQ06828 376 aa11.67□□□□□ -0.54
COL6A3-211ENST00000491233 CYBRD1Q53TN4 286 aa11.67□□□□□ -0.54
COL6A3-211ENST00000491233 C10orf128Q5T292 105 aa11.67□□□□□ -0.54
COL6A3-211ENST00000491233 ARMC4Q5T2S8 1044 aa11.67□□□□□ -0.54
COL6A3-211ENST00000491233 GLCCI1Q86VQ1 547 aa11.67□□□□□ -0.54
COL6A3-211ENST00000491233 LRRC18Q8N456 261 aa11.67□□□□□ -0.54
COL6A3-211ENST00000491233 ICA1LQ8NDH6 482 aa11.67□□□□□ -0.54
COL6A3-211ENST00000491233 OR1J2Q8NGS2 313 aa11.67□□□□□ -0.54
COL6A3-211ENST00000491233 SYNPRQ8TBG9 265 aa11.67□□□□□ -0.54
COL6A3-211ENST00000491233 SNX33Q8WV41 574 aa11.67□□□□□ -0.54
COL6A3-211ENST00000491233 HDAC2Q92769 488 aaKnown RBP11.67□□□□□ -0.54
COL6A3-211ENST00000491233 ZNF583Q96ND8 569 aa11.67□□□□□ -0.54
COL6A3-211ENST00000491233 ZNF416Q9BWM5 594 aa11.67□□□□□ -0.54
COL6A3-211ENST00000491233 RACGAP1Q9H0H5 632 aa11.67□□□□□ -0.54
COL6A3-211ENST00000491233 LPAR2Q9HBW0 351 aa11.67□□□□□ -0.54
COL6A3-211ENST00000491233 FGFR1OP2Q9NVK5 253 aa11.67□□□□□ -0.54
COL6A3-211ENST00000491233 STX18Q9P2W9 335 aaKnown RBP11.67□□□□□ -0.54
COL6A3-211ENST00000491233 MED31Q9Y3C7 131 aa11.67□□□□□ -0.54
COL6A3-211ENST00000491233 UGT2A1Q9Y4X1 527 aa11.67□□□□□ -0.54
COL6A3-211ENST00000491233 TANC2Q9HCD6 1990 aa11.67□□□□□ -0.54
COL6A3-211ENST00000491233 C17orf100A8MU93 164 aa11.66□□□□□ -0.54
COL6A3-211ENST00000491233 PPIHO43447 177 aaKnown RBP11.66□□□□□ -0.54
COL6A3-211ENST00000491233 TCF21O43680 179 aa11.66□□□□□ -0.54
COL6A3-211ENST00000491233 CDC14BO60729 498 aa11.66□□□□□ -0.54
COL6A3-211ENST00000491233 SASH3O75995 380 aa11.66□□□□□ -0.54
COL6A3-211ENST00000491233 IGF2P01344 180 aa11.66□□□□□ -0.54
COL6A3-211ENST00000491233 IFNA14P01570 189 aa11.66□□□□□ -0.54
COL6A3-211ENST00000491233 TFP02787 698 aa11.66□□□□□ -0.54
COL6A3-211ENST00000491233 THRBP10828 461 aa11.66□□□□□ -0.54
COL6A3-211ENST00000491233 ZNF250P15622 560 aa11.66□□□□□ -0.54
COL6A3-211ENST00000491233 CDAP32320 146 aa11.66□□□□□ -0.54
COL6A3-211ENST00000491233 APLNRP35414 380 aa11.66□□□□□ -0.54
COL6A3-211ENST00000491233 ARFIP2P53365 341 aa11.66□□□□□ -0.54
COL6A3-211ENST00000491233 SELENOVP59797 346 aa11.66□□□□□ -0.54
COL6A3-211ENST00000491233 MRPS11P82912 194 aaKnown RBP11.66□□□□□ -0.54
COL6A3-211ENST00000491233 MRPS34P82930 218 aaKnown RBP11.66□□□□□ -0.54
COL6A3-211ENST00000491233 CD47Q08722 323 aa11.66□□□□□ -0.54
COL6A3-211ENST00000491233 TOP3AQ13472 1001 aaPredicted RBP11.66□□□□□ -0.54
COL6A3-211ENST00000491233 MAPRE2Q15555 327 aa11.66□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms