RNA–Protein interactions for RNA: ENST00000487017.5

COL7A1-210, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 5,807 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-210ENST00000487017 OMGP23515 440 aa15.1■□□□□ 0.01
COL7A1-210ENST00000487017 CLEC1AQ8NC01 280 aa15.1■□□□□ 0.01
COL7A1-210ENST00000487017 OR52I2Q8NH67 350 aa15.1■□□□□ 0.01
COL7A1-210ENST00000487017 NTNG1Q9Y2I2 539 aa15.1■□□□□ 0.01
COL7A1-210ENST00000487017 TLCD2A6NGC4 264 aa15.1■□□□□ 0.01
COL7A1-210ENST00000487017 NSA2O95478 260 aaKnown RBP15.1■□□□□ 0.01
COL7A1-210ENST00000487017 ECI1P42126 302 aa15.1■□□□□ 0.01
COL7A1-210ENST00000487017 KCNIP4Q6PIL6 250 aa15.1■□□□□ 0.01
COL7A1-210ENST00000487017 OBP2AQ9NY56 170 aa15.1■□□□□ 0.01
COL7A1-210ENST00000487017 TMEM221A6NGB7 291 aa15.1■□□□□ 0.01
COL7A1-210ENST00000487017 HBE1P02100 147 aa15.1■□□□□ 0.01
COL7A1-210ENST00000487017 DGCR2P98153 550 aa15.1■□□□□ 0.01
COL7A1-210ENST00000487017 TLE4Q04727 773 aa15.1■□□□□ 0.01
COL7A1-210ENST00000487017 DUSP8Q13202 625 aa15.1■□□□□ 0.01
COL7A1-210ENST00000487017 IKZF1Q13422 519 aa15.1■□□□□ 0.01
COL7A1-210ENST00000487017 KANSL1Q7Z3B3 1105 aa15.1■□□□□ 0.01
COL7A1-210ENST00000487017 ADGRF3Q8IZF5 1079 aa15.1■□□□□ 0.01
COL7A1-210ENST00000487017 UPRTQ96BW1 309 aa15.1■□□□□ 0.01
COL7A1-210ENST00000487017 SOD1P00441 154 aa15.09■□□□□ 0.01
COL7A1-210ENST00000487017 RPL27P61353 136 aaKnown RBP15.09■□□□□ 0.01
COL7A1-210ENST00000487017 DCDP81605 110 aaKnown RBP15.09■□□□□ 0.01
COL7A1-210ENST00000487017 FCRL6Q6DN72 434 aa15.09■□□□□ 0.01
COL7A1-210ENST00000487017 TCTN3Q6NUS6 607 aa15.09■□□□□ 0.01
COL7A1-210ENST00000487017 WDR5BQ86VZ2 330 aa15.09■□□□□ 0.01
COL7A1-210ENST00000487017 VN1R2Q8NFZ6 395 aa15.09■□□□□ 0.01
COL7A1-210ENST00000487017 TERB2Q8NHR7 220 aa15.09■□□□□ 0.01
COL7A1-210ENST00000487017 MARC2Q969Z3 335 aa15.09■□□□□ 0.01
COL7A1-210ENST00000487017 NKX3-1Q99801 234 aaPredicted RBP15.09■□□□□ 0.01
COL7A1-210ENST00000487017 ZNF385DQ9H6B1 395 aa15.09■□□□□ 0.01
COL7A1-210ENST00000487017 HSPB6O14558 160 aa15.09■□□□□ 0.01
COL7A1-210ENST00000487017 BCAT2O15382 392 aaPredicted RBP15.09■□□□□ 0.01
COL7A1-210ENST00000487017 CAMK2BQ13554 666 aa15.09■□□□□ 0.01
COL7A1-210ENST00000487017 IAH1Q2TAA2 248 aaPredicted RBP15.09■□□□□ 0.01
COL7A1-210ENST00000487017 LIPNQ5VXI9 398 aa15.09■□□□□ 0.01
COL7A1-210ENST00000487017 GLIPR1L1Q6UWM5 242 aa15.09■□□□□ 0.01
COL7A1-210ENST00000487017 ST7LQ8TDW4 575 aa15.09■□□□□ 0.01
COL7A1-210ENST00000487017 MYEOVQ96EZ4 313 aa15.09■□□□□ 0.01
COL7A1-210ENST00000487017 DCLRE1CQ96SD1 692 aaKnown RBP15.09■□□□□ 0.01
COL7A1-210ENST00000487017 TMEM184BQ9Y519 407 aaPredicted RBP15.09■□□□□ 0.01
COL7A1-210ENST00000487017 LOXHD1Q8IVV2 1947 aa15.09■□□□□ 0.01
COL7A1-210ENST00000487017 LOC101059915A0A1B0GWI6 518 aaPredicted RBP15.09■□□□□ 0.01
COL7A1-210ENST00000487017 EIF4E2O60573 245 aaKnown RBP15.09■□□□□ 0.01
COL7A1-210ENST00000487017 ZNF74Q16587 644 aa15.09■□□□□ 0.01
COL7A1-210ENST00000487017 VHLLQ6RSH7 139 aa15.09■□□□□ 0.01
COL7A1-210ENST00000487017 SECTM1Q8WVN6 248 aa15.09■□□□□ 0.01
COL7A1-210ENST00000487017 GSX2Q9BZM3 304 aa15.09■□□□□ 0.01
COL7A1-210ENST00000487017 BCL2L10Q9HD36 194 aa15.09■□□□□ 0.01
COL7A1-210ENST00000487017 CGGBP1Q9UFW8 167 aaPredicted RBP15.09■□□□□ 0.01
COL7A1-210ENST00000487017 POU3F3P20264 500 aaPredicted RBP15.09■□□□□ 0.01
COL7A1-210ENST00000487017 SSR4P51571 173 aa15.09■□□□□ 0.01
COL7A1-210ENST00000487017 HSD17B7P56937 341 aa15.09■□□□□ 0.01
COL7A1-210ENST00000487017 HNF4GQ14541 408 aa15.09■□□□□ 0.01
COL7A1-210ENST00000487017 PAN3Q58A45 887 aaKnown RBP15.09■□□□□ 0.01
COL7A1-210ENST00000487017 AVPI1Q5T686 147 aa15.09■□□□□ 0.01
COL7A1-210ENST00000487017 CST9Q5W186 159 aa15.09■□□□□ 0.01
COL7A1-210ENST00000487017 TIGD3Q6B0B8 471 aa15.09■□□□□ 0.01
COL7A1-210ENST00000487017 PLPP5Q8NEB5 264 aa15.09■□□□□ 0.01
COL7A1-210ENST00000487017 MSI2Q96DH6 328 aaKnown RBP15.09■□□□□ 0.01
COL7A1-210ENST00000487017 SAGE1Q9NXZ1 904 aa15.09■□□□□ 0.01
COL7A1-210ENST00000487017 N4BP2Q86UW6 1770 aaPredicted RBP15.09■□□□□ 0.01
COL7A1-210ENST00000487017 H3BNC9 293 aa15.09■□□□□ 0.01
COL7A1-210ENST00000487017 TMEM11P17152 192 aa15.09■□□□□ 0.01
COL7A1-210ENST00000487017 ACHEP22303 614 aa15.09■□□□□ 0.01
COL7A1-210ENST00000487017 RNF4P78317 190 aa15.09■□□□□ 0.01
COL7A1-210ENST00000487017 FABP5Q01469 135 aa15.09■□□□□ 0.01
COL7A1-210ENST00000487017 PYCR3Q53H96 274 aa15.09■□□□□ 0.01
COL7A1-210ENST00000487017 HIST2H3PS2Q5TEC6 136 aa15.09■□□□□ 0.01
COL7A1-210ENST00000487017 OR2L13Q8N349 312 aa15.09■□□□□ 0.01
COL7A1-210ENST00000487017 ANKRD9Q96BM1 317 aaPredicted RBP15.09■□□□□ 0.01
COL7A1-210ENST00000487017 DYNLRB1Q9NP97 96 aa15.09■□□□□ 0.01
COL7A1-210ENST00000487017 EXOSC3Q9NQT5 275 aaKnown RBP15.09■□□□□ 0.01
COL7A1-210ENST00000487017 COA3Q9Y2R0 106 aaPredicted RBP15.09■□□□□ 0.01
COL7A1-210ENST00000487017 HS3ST3A1Q9Y663 406 aa15.09■□□□□ 0.01
COL7A1-210ENST00000487017 TOGARAM1Q9Y4F4 1720 aa15.08■□□□□ 0.01
COL7A1-210ENST00000487017 TSPAN12O95859 305 aa15.08■□□□□ 0.01
COL7A1-210ENST00000487017 RAF1P04049 648 aa15.08■□□□□ 0.01
COL7A1-210ENST00000487017 CATR1Q13166 79 aa15.08■□□□□ 0.01
COL7A1-210ENST00000487017 SLC30A7Q8NEW0 376 aa15.08■□□□□ 0.01
COL7A1-210ENST00000487017 OR52A5Q9H2C5 316 aa15.08■□□□□ 0.01
COL7A1-210ENST00000487017 A0A0A6YYJ9 748 aa15.08■□□□□ 0
COL7A1-210ENST00000487017 HIST1H1CP16403 213 aaKnown RBP15.08■□□□□ 0
COL7A1-210ENST00000487017 EIF1P41567 113 aaKnown RBP15.08■□□□□ 0
COL7A1-210ENST00000487017 MAP2K6P52564 334 aa15.08■□□□□ 0
COL7A1-210ENST00000487017 SSTP61278 116 aa15.08■□□□□ 0
COL7A1-210ENST00000487017 GRINAQ7Z429 371 aa15.08■□□□□ 0
COL7A1-210ENST00000487017 DAZAP1Q96EP5 407 aaKnown RBP15.08■□□□□ 0
COL7A1-210ENST00000487017 SLC6A17Q9H1V8 727 aa15.08■□□□□ 0
COL7A1-210ENST00000487017 FGF22Q9HCT0 170 aa15.08■□□□□ 0
COL7A1-210ENST00000487017 RAB19A4D1S5 217 aa15.08■□□□□ 0
COL7A1-210ENST00000487017 CSF3P09919 207 aa15.08■□□□□ 0
COL7A1-210ENST00000487017 ICAM2P13598 275 aa15.08■□□□□ 0
COL7A1-210ENST00000487017 NPY4RP50391 375 aa15.08■□□□□ 0
COL7A1-210ENST00000487017 HCCSP53701 268 aa15.08■□□□□ 0
COL7A1-210ENST00000487017 NKAIN2Q5VXU1 208 aa15.08■□□□□ 0
COL7A1-210ENST00000487017 CST9LP1Q5W188 147 aa15.08■□□□□ 0
COL7A1-210ENST00000487017 ANGPTL5Q86XS5 388 aa15.08■□□□□ 0
COL7A1-210ENST00000487017 SPPL3Q8TCT6 385 aa15.08■□□□□ 0
COL7A1-210ENST00000487017 TSSK2Q96PF2 358 aa15.08■□□□□ 0
COL7A1-210ENST00000487017 FAM234AQ9H0X4 552 aa15.08■□□□□ 0
COL7A1-210ENST00000487017 TRAPPC2LQ9UL33 140 aa15.08■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 48.8 ms