RNA–Protein interactions for RNA: ENST00000476085.1

MSH5-SAPCD1-205, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 2

Gene MSH5-SAPCD1, Length 950 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-205ENST00000476085 CCL2P13500 99 aa10.46□□□□□ -0.73
MSH5-SAPCD1-205ENST00000476085 FUT1P19526 365 aa10.46□□□□□ -0.73
MSH5-SAPCD1-205ENST00000476085 RBM34P42696 430 aaKnown RBP10.46□□□□□ -0.73
MSH5-SAPCD1-205ENST00000476085 UCP2P55851 309 aa10.46□□□□□ -0.73
MSH5-SAPCD1-205ENST00000476085 ERVS71-1P61550 626 aa10.46□□□□□ -0.73
MSH5-SAPCD1-205ENST00000476085 NFYCQ13952 458 aa10.46□□□□□ -0.73
MSH5-SAPCD1-205ENST00000476085 CCNIQ14094 377 aa10.46□□□□□ -0.73
MSH5-SAPCD1-205ENST00000476085 MMEL1Q495T6 779 aa10.46□□□□□ -0.73
MSH5-SAPCD1-205ENST00000476085 GKAP1Q5VSY0 366 aaPredicted RBP10.46□□□□□ -0.73
MSH5-SAPCD1-205ENST00000476085 RGS7BPQ6MZT1 257 aaPredicted RBP10.46□□□□□ -0.73
MSH5-SAPCD1-205ENST00000476085 HIST3H2AQ7L7L0 130 aa10.46□□□□□ -0.73
MSH5-SAPCD1-205ENST00000476085 CPEB3Q8NE35 698 aaKnown RBP10.46□□□□□ -0.73
MSH5-SAPCD1-205ENST00000476085 ZNF519Q8TB69 540 aa10.46□□□□□ -0.73
MSH5-SAPCD1-205ENST00000476085 HIST1H2ACQ93077 130 aa10.46□□□□□ -0.73
MSH5-SAPCD1-205ENST00000476085 NABP1Q96AH0 204 aa10.46□□□□□ -0.73
MSH5-SAPCD1-205ENST00000476085 TMEM186Q96B77 213 aa10.46□□□□□ -0.73
MSH5-SAPCD1-205ENST00000476085 THOC1Q96FV9 657 aaKnown RBP10.46□□□□□ -0.73
MSH5-SAPCD1-205ENST00000476085 ZNF583Q96ND8 569 aa10.46□□□□□ -0.73
MSH5-SAPCD1-205ENST00000476085 TSPAN32Q96QS1 320 aa10.46□□□□□ -0.73
MSH5-SAPCD1-205ENST00000476085 C1orf198Q9H425 327 aa10.46□□□□□ -0.73
MSH5-SAPCD1-205ENST00000476085 C20orf141Q9NUB4 165 aa10.46□□□□□ -0.73
MSH5-SAPCD1-205ENST00000476085 TAAR3PQ9P1P4 343 aa10.46□□□□□ -0.73
MSH5-SAPCD1-205ENST00000476085 DUSP13Q9UII6 198 aa10.46□□□□□ -0.73
MSH5-SAPCD1-205ENST00000476085 UGT2A1Q9Y4X1 527 aa10.46□□□□□ -0.73
MSH5-SAPCD1-205ENST00000476085 A0A0A6YYJ9 748 aa10.45□□□□□ -0.74
MSH5-SAPCD1-205ENST00000476085 IGKV1D-43A0A0B4J1Z2 117 aa10.45□□□□□ -0.74
MSH5-SAPCD1-205ENST00000476085 DEAF1O75398 565 aaPredicted RBP10.45□□□□□ -0.74
MSH5-SAPCD1-205ENST00000476085 OR7A10O76100 309 aa10.45□□□□□ -0.74
MSH5-SAPCD1-205ENST00000476085 OR5F1O95221 314 aa10.45□□□□□ -0.74
MSH5-SAPCD1-205ENST00000476085 FARS2O95363 451 aaKnown RBP10.45□□□□□ -0.74
MSH5-SAPCD1-205ENST00000476085 NPPAP01160 153 aa10.45□□□□□ -0.74
MSH5-SAPCD1-205ENST00000476085 IGHV3-13P01766 116 aa10.45□□□□□ -0.74
MSH5-SAPCD1-205ENST00000476085 F13BP05160 661 aa10.45□□□□□ -0.74
MSH5-SAPCD1-205ENST00000476085 SAGP10523 405 aaPredicted RBP10.45□□□□□ -0.74
MSH5-SAPCD1-205ENST00000476085 ACADSP16219 412 aa10.45□□□□□ -0.74
MSH5-SAPCD1-205ENST00000476085 PCMT1P22061 227 aa10.45□□□□□ -0.74
MSH5-SAPCD1-205ENST00000476085 AQP2P41181 271 aa10.45□□□□□ -0.74
MSH5-SAPCD1-205ENST00000476085 CRYBB2P43320 205 aa10.45□□□□□ -0.74
MSH5-SAPCD1-205ENST00000476085 RAD52P43351 418 aa10.45□□□□□ -0.74
MSH5-SAPCD1-205ENST00000476085 MAGEB1P43366 347 aa10.45□□□□□ -0.74
MSH5-SAPCD1-205ENST00000476085 MRPS34P82930 218 aaKnown RBP10.45□□□□□ -0.74
MSH5-SAPCD1-205ENST00000476085 PIN1Q13526 163 aaPredicted RBP10.45□□□□□ -0.74
MSH5-SAPCD1-205ENST00000476085 FHL1Q13642 323 aa10.45□□□□□ -0.74
MSH5-SAPCD1-205ENST00000476085 SLC36A2Q495M3 483 aa10.45□□□□□ -0.74
MSH5-SAPCD1-205ENST00000476085 RABL3Q5HYI8 236 aa10.45□□□□□ -0.74
MSH5-SAPCD1-205ENST00000476085 COQ5Q5HYK3 327 aa10.45□□□□□ -0.74
MSH5-SAPCD1-205ENST00000476085 TMEM255AQ5JRV8 349 aa10.45□□□□□ -0.74
MSH5-SAPCD1-205ENST00000476085 TMEM53Q6P2H8 277 aa10.45□□□□□ -0.74
MSH5-SAPCD1-205ENST00000476085 C1orf229Q6ZS94 237 aaPredicted RBP10.45□□□□□ -0.74
MSH5-SAPCD1-205ENST00000476085 SLC16A14Q7RTX9 510 aa10.45□□□□□ -0.74
MSH5-SAPCD1-205ENST00000476085 NANOGNBQ7Z5D8 188 aa10.45□□□□□ -0.74
MSH5-SAPCD1-205ENST00000476085 MEX3DQ86XN8 651 aaKnown RBP10.45□□□□□ -0.74
MSH5-SAPCD1-205ENST00000476085 NOXO1Q8NFA2 376 aa10.45□□□□□ -0.74
MSH5-SAPCD1-205ENST00000476085 OR8J3Q8NGG0 315 aa10.45□□□□□ -0.74
MSH5-SAPCD1-205ENST00000476085 PFN4Q8NHR9 129 aa10.45□□□□□ -0.74
MSH5-SAPCD1-205ENST00000476085 TMEM255BQ8WV15 326 aa10.45□□□□□ -0.74
MSH5-SAPCD1-205ENST00000476085 LRRC58Q96CX6 371 aa10.45□□□□□ -0.74
MSH5-SAPCD1-205ENST00000476085 ZNF416Q9BWM5 594 aa10.45□□□□□ -0.74
MSH5-SAPCD1-205ENST00000476085 BCL2L14Q9BZR8 327 aa10.45□□□□□ -0.74
MSH5-SAPCD1-205ENST00000476085 SIAEQ9HAT2 523 aa10.45□□□□□ -0.74
MSH5-SAPCD1-205ENST00000476085 SMURF2Q9HAU4 748 aa10.45□□□□□ -0.74
MSH5-SAPCD1-205ENST00000476085 HINT3Q9NQE9 182 aaKnown RBP10.45□□□□□ -0.74
MSH5-SAPCD1-205ENST00000476085 HIF1ANQ9NWT6 349 aa10.45□□□□□ -0.74
MSH5-SAPCD1-205ENST00000476085 RIMS3Q9UJD0 308 aa10.45□□□□□ -0.74
MSH5-SAPCD1-205ENST00000476085 ICMTO60725 284 aa10.44□□□□□ -0.74
MSH5-SAPCD1-205ENST00000476085 VENTXO95231 258 aa10.44□□□□□ -0.74
MSH5-SAPCD1-205ENST00000476085 PTHP01270 115 aa10.44□□□□□ -0.74
MSH5-SAPCD1-205ENST00000476085 MSMBP08118 114 aa10.44□□□□□ -0.74
MSH5-SAPCD1-205ENST00000476085 FAM157BP0CG42 384 aa10.44□□□□□ -0.74
MSH5-SAPCD1-205ENST00000476085 THRBP10828 461 aa10.44□□□□□ -0.74
MSH5-SAPCD1-205ENST00000476085 ITGA2P17301 1181 aa10.44□□□□□ -0.74
MSH5-SAPCD1-205ENST00000476085 TNFRSF1BP20333 461 aa10.44□□□□□ -0.74
MSH5-SAPCD1-205ENST00000476085 LSP1P33241 339 aa10.44□□□□□ -0.74
MSH5-SAPCD1-205ENST00000476085 KLF3P57682 345 aaPredicted RBP10.44□□□□□ -0.74
MSH5-SAPCD1-205ENST00000476085 CLRN1P58418 232 aa10.44□□□□□ -0.74
MSH5-SAPCD1-205ENST00000476085 MYBPC1Q00872 1141 aa10.44□□□□□ -0.74
MSH5-SAPCD1-205ENST00000476085 CYLC2Q14093 348 aaPredicted RBP10.44□□□□□ -0.74
MSH5-SAPCD1-205ENST00000476085 LAPTM4AQ15012 233 aa10.44□□□□□ -0.74
MSH5-SAPCD1-205ENST00000476085 TBC1D28Q2M2D7 210 aa10.44□□□□□ -0.74
MSH5-SAPCD1-205ENST00000476085 PCGF3Q3KNV8 242 aa10.44□□□□□ -0.74
MSH5-SAPCD1-205ENST00000476085 SLC25A47Q6Q0C1 308 aa10.44□□□□□ -0.74
MSH5-SAPCD1-205ENST00000476085 GLCCI1Q86VQ1 547 aa10.44□□□□□ -0.74
MSH5-SAPCD1-205ENST00000476085 SYT14Q8NB59 555 aa10.44□□□□□ -0.74
MSH5-SAPCD1-205ENST00000476085 SEMA6DQ8NFY4 1073 aa10.44□□□□□ -0.74
MSH5-SAPCD1-205ENST00000476085 OR1J2Q8NGS2 313 aa10.44□□□□□ -0.74
MSH5-SAPCD1-205ENST00000476085 MOSPD2Q8NHP6 518 aa10.44□□□□□ -0.74
MSH5-SAPCD1-205ENST00000476085 SYNPRQ8TBG9 265 aa10.44□□□□□ -0.74
MSH5-SAPCD1-205ENST00000476085 SLC26A7Q8TE54 656 aa10.44□□□□□ -0.74
MSH5-SAPCD1-205ENST00000476085 ZFAND2BQ8WV99 257 aa10.44□□□□□ -0.74
MSH5-SAPCD1-205ENST00000476085 TMEM239Q8WW34 195 aa10.44□□□□□ -0.74
MSH5-SAPCD1-205ENST00000476085 C11orf40Q8WZ69 217 aa10.44□□□□□ -0.74
MSH5-SAPCD1-205ENST00000476085 HDAC2Q92769 488 aaKnown RBP10.44□□□□□ -0.74
MSH5-SAPCD1-205ENST00000476085 POM121L2Q96KW2 1035 aa10.44□□□□□ -0.74
MSH5-SAPCD1-205ENST00000476085 TXNIPQ9H3M7 391 aa10.44□□□□□ -0.74
MSH5-SAPCD1-205ENST00000476085 NPHS2Q9NP85 383 aa10.44□□□□□ -0.74
MSH5-SAPCD1-205ENST00000476085 G6PC2Q9NQR9 355 aa10.44□□□□□ -0.74
MSH5-SAPCD1-205ENST00000476085 INIPQ9NRY2 104 aa10.44□□□□□ -0.74
MSH5-SAPCD1-205ENST00000476085 MRGBPQ9NV56 204 aa10.44□□□□□ -0.74
MSH5-SAPCD1-205ENST00000476085 SLCO1C1Q9NYB5 712 aa10.44□□□□□ -0.74
MSH5-SAPCD1-205ENST00000476085 TREM2Q9NZC2 230 aa10.44□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms