RNA–Protein interactions for RNA: ENST00000474929.1

USP54-211, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 590 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-211ENST00000474929 PRSS53Q2L4Q9 553 aa6.58□□□□□ -1.36
USP54-211ENST00000474929 ZNF181Q2M3W8 571 aa6.58□□□□□ -1.36
USP54-211ENST00000474929 ARSJQ5FYB0 599 aaPredicted RBP6.58□□□□□ -1.36
USP54-211ENST00000474929 XKR7Q5GH72 579 aa6.58□□□□□ -1.36
USP54-211ENST00000474929 HP1BP3Q5SSJ5 553 aaPredicted RBP6.58□□□□□ -1.36
USP54-211ENST00000474929 AP1ARQ63HQ0 302 aa6.58□□□□□ -1.36
USP54-211ENST00000474929 CMC1Q7Z7K0 106 aa6.58□□□□□ -1.36
USP54-211ENST00000474929 IGFN1Q86VF2 1251 aa6.58□□□□□ -1.36
USP54-211ENST00000474929 HOMEZQ8IX15 550 aa6.58□□□□□ -1.36
USP54-211ENST00000474929 KLHL7Q8IXQ5 586 aa6.58□□□□□ -1.36
USP54-211ENST00000474929 C20orf196Q8IYI0 205 aa6.58□□□□□ -1.36
USP54-211ENST00000474929 CENPLQ8N0S6 344 aaPredicted RBP6.58□□□□□ -1.36
USP54-211ENST00000474929 LINC00482Q8N8I6 264 aa6.58□□□□□ -1.36
USP54-211ENST00000474929 SCAIQ8N9R8 606 aa6.58□□□□□ -1.36
USP54-211ENST00000474929 BEND2Q8NDZ0 799 aa6.58□□□□□ -1.36
USP54-211ENST00000474929 FBXO36Q8NEA4 188 aa6.58□□□□□ -1.36
USP54-211ENST00000474929 MFSD8Q8NHS3 518 aa6.58□□□□□ -1.36
USP54-211ENST00000474929 PPP1R35Q8TAP8 253 aa6.58□□□□□ -1.36
USP54-211ENST00000474929 PNPT1Q8TCS8 783 aaKnown RBP6.58□□□□□ -1.36
USP54-211ENST00000474929 SFXN5Q8TD22 340 aa6.58□□□□□ -1.36
USP54-211ENST00000474929 ACTRT1Q8TDG2 376 aa6.58□□□□□ -1.36
USP54-211ENST00000474929 ZNF483Q8TF39 744 aaPredicted RBP6.58□□□□□ -1.36
USP54-211ENST00000474929 WIPF2Q8TF74 440 aaPredicted RBP6.58□□□□□ -1.36
USP54-211ENST00000474929 MTERF3Q96E29 417 aa6.58□□□□□ -1.36
USP54-211ENST00000474929 CCDC126Q96EE4 140 aa6.58□□□□□ -1.36
USP54-211ENST00000474929 NSUN5Q96P11 429 aaKnown RBP6.58□□□□□ -1.36
USP54-211ENST00000474929 TMEM246Q9BRR3 403 aa6.58□□□□□ -1.36
USP54-211ENST00000474929 ZNF350Q9GZX5 532 aa6.58□□□□□ -1.36
USP54-211ENST00000474929 TRIM36Q9NQ86 728 aa6.58□□□□□ -1.36
USP54-211ENST00000474929 INPP5EQ9NRR6 644 aa6.58□□□□□ -1.36
USP54-211ENST00000474929 ST6GALNAC1Q9NSC7 600 aaPredicted RBP6.58□□□□□ -1.36
USP54-211ENST00000474929 B3GAT1Q9P2W7 334 aa6.58□□□□□ -1.36
USP54-211ENST00000474929 RNF14Q9UBS8 474 aa6.58□□□□□ -1.36
USP54-211ENST00000474929 SMAD5-AS1Q9Y6J3 95 aa6.58□□□□□ -1.36
USP54-211ENST00000474929 LOC102725191A0A1B0GVB3 256 aa6.57□□□□□ -1.36
USP54-211ENST00000474929 AIM2O14862 343 aa6.57□□□□□ -1.36
USP54-211ENST00000474929 NPFFO15130 113 aa6.57□□□□□ -1.36
USP54-211ENST00000474929 PNMTP11086 282 aa6.57□□□□□ -1.36
USP54-211ENST00000474929 IRF2P14316 349 aa6.57□□□□□ -1.36
USP54-211ENST00000474929 TCP1P17987 556 aaKnown RBP6.57□□□□□ -1.36
USP54-211ENST00000474929 GSTM3P21266 225 aa6.57□□□□□ -1.36
USP54-211ENST00000474929 TUBG1P23258 451 aa6.57□□□□□ -1.36
USP54-211ENST00000474929 AHCYP23526 432 aa6.57□□□□□ -1.36
USP54-211ENST00000474929 MAPK1P28482 360 aa6.57□□□□□ -1.36
USP54-211ENST00000474929 RPL3P39023 403 aaKnown RBP6.57□□□□□ -1.36
USP54-211ENST00000474929 RGS6P49758 472 aa6.57□□□□□ -1.36
USP54-211ENST00000474929 ARHGDIAP52565 204 aa6.57□□□□□ -1.36
USP54-211ENST00000474929 MRPS25P82663 173 aaKnown RBP6.57□□□□□ -1.36
USP54-211ENST00000474929 HPCAP84074 193 aa6.57□□□□□ -1.36
USP54-211ENST00000474929 BTKQ06187 659 aa6.57□□□□□ -1.36
USP54-211ENST00000474929 NAB1Q13506 487 aa6.57□□□□□ -1.36
USP54-211ENST00000474929 SPDYE7PQ495Y7 208 aa6.57□□□□□ -1.36
USP54-211ENST00000474929 CDONQ4KMG0 1287 aa6.57□□□□□ -1.36
USP54-211ENST00000474929 TEX35Q5T0J7 233 aa6.57□□□□□ -1.36
USP54-211ENST00000474929 ATAD3BQ5T9A4 648 aa6.57□□□□□ -1.36
USP54-211ENST00000474929 C1orf140Q5VVS0 124 aa6.57□□□□□ -1.36
USP54-211ENST00000474929 C5orf46Q6UWT4 87 aa6.57□□□□□ -1.36
USP54-211ENST00000474929 GPRIN3Q6ZVF9 776 aa6.57□□□□□ -1.36
USP54-211ENST00000474929 CYS1Q717R9 158 aa6.57□□□□□ -1.36
USP54-211ENST00000474929 C16orf62Q7Z3J2 963 aa6.57□□□□□ -1.36
USP54-211ENST00000474929 PIGWQ7Z7B1 504 aa6.57□□□□□ -1.36
USP54-211ENST00000474929 ANKMY2Q8IV38 441 aa6.57□□□□□ -1.36
USP54-211ENST00000474929 ZNF440Q8IYI8 595 aa6.57□□□□□ -1.36
USP54-211ENST00000474929 PAQR4Q8N4S7 273 aaPredicted RBP6.57□□□□□ -1.36
USP54-211ENST00000474929 NATD1Q8N6N6 113 aa6.57□□□□□ -1.36
USP54-211ENST00000474929 HIPK4Q8NE63 616 aa6.57□□□□□ -1.36
USP54-211ENST00000474929 OR2Z1Q8NG97 314 aa6.57□□□□□ -1.36
USP54-211ENST00000474929 OR4X2Q8NGF9 303 aa6.57□□□□□ -1.36
USP54-211ENST00000474929 OR51G2Q8NGK0 314 aa6.57□□□□□ -1.36
USP54-211ENST00000474929 OR6N1Q8NGY5 312 aa6.57□□□□□ -1.36
USP54-211ENST00000474929 METTL6Q8TCB7 284 aa6.57□□□□□ -1.36
USP54-211ENST00000474929 KLF14Q8TD94 323 aaPredicted RBP6.57□□□□□ -1.36
USP54-211ENST00000474929 STK35Q8TDR2 534 aa6.57□□□□□ -1.36
USP54-211ENST00000474929 CIDECQ96AQ7 238 aaPredicted RBP6.57□□□□□ -1.36
USP54-211ENST00000474929 OR7D2Q96RA2 312 aa6.57□□□□□ -1.36
USP54-211ENST00000474929 NAPGQ99747 312 aaPredicted RBP6.57□□□□□ -1.36
USP54-211ENST00000474929 C1QTNF3Q9BXJ4 246 aa6.57□□□□□ -1.36
USP54-211ENST00000474929 CDCA4Q9BXL8 241 aa6.57□□□□□ -1.36
USP54-211ENST00000474929 WNT10AQ9GZT5 417 aa6.57□□□□□ -1.36
USP54-211ENST00000474929 PCDHAC1Q9H158 963 aa6.57□□□□□ -1.36
USP54-211ENST00000474929 REEP4Q9H6H4 257 aa6.57□□□□□ -1.36
USP54-211ENST00000474929 TUBG2Q9NRH3 451 aa6.57□□□□□ -1.36
USP54-211ENST00000474929 SERTAD4Q9NUC0 356 aa6.57□□□□□ -1.36
USP54-211ENST00000474929 HIF3AQ9Y2N7 669 aa6.57□□□□□ -1.36
USP54-211ENST00000474929 SAR1BQ9Y6B6 198 aa6.57□□□□□ -1.36
USP54-211ENST00000474929 OR2T1O43869 369 aa6.56□□□□□ -1.36
USP54-211ENST00000474929 CRCPO75575 148 aa6.56□□□□□ -1.36
USP54-211ENST00000474929 CHN1P15882 459 aa6.56□□□□□ -1.36
USP54-211ENST00000474929 MYF6P23409 242 aa6.56□□□□□ -1.36
USP54-211ENST00000474929 SLC6A1P30531 599 aa6.56□□□□□ -1.36
USP54-211ENST00000474929 CASQ1P31415 396 aa6.56□□□□□ -1.36
USP54-211ENST00000474929 PAFAH1B1P43034 410 aa6.56□□□□□ -1.36
USP54-211ENST00000474929 COPZ1P61923 177 aa6.56□□□□□ -1.36
USP54-211ENST00000474929 KCNJ10P78508 379 aa6.56□□□□□ -1.36
USP54-211ENST00000474929 HSF2Q03933 536 aa6.56□□□□□ -1.36
USP54-211ENST00000474929 LRRC75BQ2VPJ9 315 aa6.56□□□□□ -1.36
USP54-211ENST00000474929 THEM4Q5T1C6 240 aa6.56□□□□□ -1.36
USP54-211ENST00000474929 IL23RQ5VWK5 629 aa6.56□□□□□ -1.36
USP54-211ENST00000474929 ARL9Q6T311 187 aa6.56□□□□□ -1.36
USP54-211ENST00000474929 VMO1Q7Z5L0 202 aa6.56□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 49.3 ms