RNA–Protein interactions for RNA: ENST00000471342.1

SF3A1-207, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 459 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-207ENST00000471342 GPR35Q9HC97 309 aa8.69□□□□□ -1.02
SF3A1-207ENST00000471342 DNAJC27Q9NZQ0 273 aa8.69□□□□□ -1.02
SF3A1-207ENST00000471342 COPS3Q9UNS2 423 aa8.69□□□□□ -1.02
SF3A1-207ENST00000471342 EXOGQ9Y2C4 368 aaKnown RBP8.69□□□□□ -1.02
SF3A1-207ENST00000471342 KLHDC2Q9Y2U9 406 aa8.69□□□□□ -1.02
SF3A1-207ENST00000471342 FKBP7Q9Y680 259 aa8.69□□□□□ -1.02
SF3A1-207ENST00000471342 UBR5O95071 2799 aaPredicted RBP8.68□□□□□ -1.02
SF3A1-207ENST00000471342 A0A1W2PRG6 482 aa8.68□□□□□ -1.02
SF3A1-207ENST00000471342 FIGNL2A6NMB9 653 aa8.68□□□□□ -1.02
SF3A1-207ENST00000471342 PYCARD-AS1I3L0S3 204 aa8.68□□□□□ -1.02
SF3A1-207ENST00000471342 GPR171O14626 319 aa8.68□□□□□ -1.02
SF3A1-207ENST00000471342 PRRG2O14669 202 aa8.68□□□□□ -1.02
SF3A1-207ENST00000471342 DHHO43323 396 aa8.68□□□□□ -1.02
SF3A1-207ENST00000471342 XPNPEP2O43895 674 aa8.68□□□□□ -1.02
SF3A1-207ENST00000471342 MMP7P09237 267 aaPredicted RBP8.68□□□□□ -1.02
SF3A1-207ENST00000471342 TMIGD3P0DMS9 266 aaPredicted RBP8.68□□□□□ -1.02
SF3A1-207ENST00000471342 CRHBPP24387 322 aa8.68□□□□□ -1.02
SF3A1-207ENST00000471342 CTSSP25774 331 aa8.68□□□□□ -1.02
SF3A1-207ENST00000471342 HTR1FP30939 366 aa8.68□□□□□ -1.02
SF3A1-207ENST00000471342 HCCSP53701 268 aa8.68□□□□□ -1.02
SF3A1-207ENST00000471342 PIGFQ07326 219 aa8.68□□□□□ -1.02
SF3A1-207ENST00000471342 STK11Q15831 433 aa8.68□□□□□ -1.02
SF3A1-207ENST00000471342 KRTAP27-1Q3LI81 207 aa8.68□□□□□ -1.02
SF3A1-207ENST00000471342 CARD17Q5XLA6 110 aa8.68□□□□□ -1.02
SF3A1-207ENST00000471342 FAM205BPQ63HN1 556 aa8.68□□□□□ -1.02
SF3A1-207ENST00000471342 MEPCEQ7L2J0 689 aaKnown RBP8.68□□□□□ -1.02
SF3A1-207ENST00000471342 ACBD4Q8NC06 268 aa8.68□□□□□ -1.02
SF3A1-207ENST00000471342 OR52L1Q8NGH7 329 aa8.68□□□□□ -1.02
SF3A1-207ENST00000471342 ITLN2Q8WWU7 325 aaPredicted RBP8.68□□□□□ -1.02
SF3A1-207ENST00000471342 BCL2L2Q92843 193 aaPredicted RBP8.68□□□□□ -1.02
SF3A1-207ENST00000471342 LGALS12Q96DT0 336 aa8.68□□□□□ -1.02
SF3A1-207ENST00000471342 FOXN4Q96NZ1 517 aa8.68□□□□□ -1.02
SF3A1-207ENST00000471342 SLCO5A1Q9H2Y9 848 aa8.68□□□□□ -1.02
SF3A1-207ENST00000471342 WDR76Q9H967 626 aa8.68□□□□□ -1.02
SF3A1-207ENST00000471342 SRA1Q9HD15 236 aaKnown RBP8.68□□□□□ -1.02
SF3A1-207ENST00000471342 AMBNQ9NP70 447 aa8.68□□□□□ -1.02
SF3A1-207ENST00000471342 PNRC2Q9NPJ4 139 aaKnown RBP8.68□□□□□ -1.02
SF3A1-207ENST00000471342 RPRD1BQ9NQG5 326 aaKnown RBP8.68□□□□□ -1.02
SF3A1-207ENST00000471342 B3GNT2Q9NY97 397 aa8.68□□□□□ -1.02
SF3A1-207ENST00000471342 GRHPRQ9UBQ7 328 aa8.68□□□□□ -1.02
SF3A1-207ENST00000471342 PSORS1C1Q9UIG5 152 aa8.68□□□□□ -1.02
SF3A1-207ENST00000471342 ERRFI1Q9UJM3 462 aaPredicted RBP8.68□□□□□ -1.02
SF3A1-207ENST00000471342 KLHL21Q9UJP4 597 aa8.68□□□□□ -1.02
SF3A1-207ENST00000471342 MYRFQ9Y2G1 1151 aa8.68□□□□□ -1.02
SF3A1-207ENST00000471342 COA3Q9Y2R0 106 aaPredicted RBP8.68□□□□□ -1.02
SF3A1-207ENST00000471342 NOSIPQ9Y314 301 aaKnown RBP8.68□□□□□ -1.02
SF3A1-207ENST00000471342 A6NIZ1 184 aa8.67□□□□□ -1.02
SF3A1-207ENST00000471342 M0R3G1 203 aa8.67□□□□□ -1.02
SF3A1-207ENST00000471342 SLC16A7O60669 478 aa8.67□□□□□ -1.02
SF3A1-207ENST00000471342 GLCEO94923 617 aa8.67□□□□□ -1.02
SF3A1-207ENST00000471342 OR6A2O95222 327 aa8.67□□□□□ -1.02
SF3A1-207ENST00000471342 IGHG1P01857 330 aa8.67□□□□□ -1.02
SF3A1-207ENST00000471342 SMIM18P0DKX4 95 aa8.67□□□□□ -1.02
SF3A1-207ENST00000471342 DBTP11182 482 aaKnown RBP8.67□□□□□ -1.02
SF3A1-207ENST00000471342 FCGR2AP12318 317 aa8.67□□□□□ -1.02
SF3A1-207ENST00000471342 CD79BP40259 229 aa8.67□□□□□ -1.02
SF3A1-207ENST00000471342 RPS27P42677 84 aaKnown RBP8.67□□□□□ -1.02
SF3A1-207ENST00000471342 HSPA13P48723 471 aa8.67□□□□□ -1.02
SF3A1-207ENST00000471342 NUDT6P53370 316 aa8.67□□□□□ -1.02
SF3A1-207ENST00000471342 CXCR4P61073 352 aa8.67□□□□□ -1.02
SF3A1-207ENST00000471342 RAP1BP61224 184 aa8.67□□□□□ -1.02
SF3A1-207ENST00000471342 RAP1AP62834 184 aa8.67□□□□□ -1.02
SF3A1-207ENST00000471342 SIRPAP78324 504 aa8.67□□□□□ -1.02
SF3A1-207ENST00000471342 SLC35A2P78381 396 aa8.67□□□□□ -1.02
SF3A1-207ENST00000471342 ZNF85Q03923 595 aa8.67□□□□□ -1.02
SF3A1-207ENST00000471342 ZNF91Q05481 1191 aa8.67□□□□□ -1.02
SF3A1-207ENST00000471342 C1DQ13901 141 aaKnown RBP8.67□□□□□ -1.02
SF3A1-207ENST00000471342 TSC22D1Q15714 1073 aa8.67□□□□□ -1.02
SF3A1-207ENST00000471342 MEP1BQ16820 701 aa8.67□□□□□ -1.02
SF3A1-207ENST00000471342 FBXL19-AS1Q494R0 122 aa8.67□□□□□ -1.02
SF3A1-207ENST00000471342 TEX30Q5JUR7 227 aa8.67□□□□□ -1.02
SF3A1-207ENST00000471342 THEM4Q5T1C6 240 aa8.67□□□□□ -1.02
SF3A1-207ENST00000471342 FAM208BQ5VWN6 2430 aa8.67□□□□□ -1.02
SF3A1-207ENST00000471342 FBXW9Q5XUX1 488 aa8.67□□□□□ -1.02
SF3A1-207ENST00000471342 STAC2Q6ZMT1 411 aa8.67□□□□□ -1.02
SF3A1-207ENST00000471342 CXXC5Q7LFL8 322 aaKnown RBP8.67□□□□□ -1.02
SF3A1-207ENST00000471342 SSX6Q7RTT6 188 aa8.67□□□□□ -1.02
SF3A1-207ENST00000471342 ZNF433Q8N7K0 673 aaPredicted RBP8.67□□□□□ -1.02
SF3A1-207ENST00000471342 C11orf40Q8WZ69 217 aa8.67□□□□□ -1.02
SF3A1-207ENST00000471342 PHF3Q92576 2039 aaKnown RBP8.67□□□□□ -1.02
SF3A1-207ENST00000471342 USP9XQ93008 2570 aaPredicted RBP8.67□□□□□ -1.02
SF3A1-207ENST00000471342 FBXO17Q96EF6 278 aa8.67□□□□□ -1.02
SF3A1-207ENST00000471342 ZHX1-C8orf76Q96EF9 292 aa8.67□□□□□ -1.02
SF3A1-207ENST00000471342 ALKBH3Q96Q83 286 aaPredicted RBP8.67□□□□□ -1.02
SF3A1-207ENST00000471342 SFXN3Q9BWM7 321 aa8.67□□□□□ -1.02
SF3A1-207ENST00000471342 JAM3Q9BX67 310 aa8.67□□□□□ -1.02
SF3A1-207ENST00000471342 VCX3BQ9H321 246 aa8.67□□□□□ -1.02
SF3A1-207ENST00000471342 C12orf49Q9H741 205 aa8.67□□□□□ -1.02
SF3A1-207ENST00000471342 CRLF2Q9HC73 371 aa8.67□□□□□ -1.02
SF3A1-207ENST00000471342 ZNF629Q9UEG4 869 aaPredicted RBP8.67□□□□□ -1.02
SF3A1-207ENST00000471342 ENOPH1Q9UHY7 261 aa8.67□□□□□ -1.02
SF3A1-207ENST00000471342 SH3BGRL2Q9UJC5 107 aa8.67□□□□□ -1.02
SF3A1-207ENST00000471342 LHFPL6Q9Y693 200 aa8.67□□□□□ -1.02
SF3A1-207ENST00000471342 PRR14LQ5THK1 2151 aa8.66□□□□□ -1.02
SF3A1-207ENST00000471342 TRGV8A0A0C4DH27 118 aa8.66□□□□□ -1.02
SF3A1-207ENST00000471342 TVP23AA6NH52 213 aa8.66□□□□□ -1.02
SF3A1-207ENST00000471342 SLC1A7O00341 560 aa8.66□□□□□ -1.02
SF3A1-207ENST00000471342 PRODHO43272 600 aa8.66□□□□□ -1.02
SF3A1-207ENST00000471342 MRPL33O75394 65 aaKnown RBP8.66□□□□□ -1.02
SF3A1-207ENST00000471342 CNOT4O95628 575 aaKnown RBP8.66□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms