RNA–Protein interactions for RNA: ENST00000471309.1

VPS52-216, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 2

Gene VPS52, Length 505 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-216ENST00000471309 CCDC58Q4VC31 144 aa8.36□□□□□ -1.07
VPS52-216ENST00000471309 TP53I3Q53FA7 332 aa8.36□□□□□ -1.07
VPS52-216ENST00000471309 THEM4Q5T1C6 240 aa8.36□□□□□ -1.07
VPS52-216ENST00000471309 VASNQ6EMK4 673 aa8.36□□□□□ -1.07
VPS52-216ENST00000471309 PLEKHG7Q6ZR37 379 aa8.36□□□□□ -1.07
VPS52-216ENST00000471309 CREB3L2Q70SY1 520 aa8.36□□□□□ -1.07
VPS52-216ENST00000471309 TUBA1AQ71U36 451 aa8.36□□□□□ -1.07
VPS52-216ENST00000471309 TRILQ7L0X0 811 aa8.36□□□□□ -1.07
VPS52-216ENST00000471309 FAM220AQ7Z4H9 259 aa8.36□□□□□ -1.07
VPS52-216ENST00000471309 KCTD20Q7Z5Y7 419 aa8.36□□□□□ -1.07
VPS52-216ENST00000471309 UBQLNLQ8IYU4 475 aa8.36□□□□□ -1.07
VPS52-216ENST00000471309 ZFP41Q8N8Y5 198 aa8.36□□□□□ -1.07
VPS52-216ENST00000471309 ZNF454Q8N9F8 522 aa8.36□□□□□ -1.07
VPS52-216ENST00000471309 SYT14Q8NB59 555 aa8.36□□□□□ -1.07
VPS52-216ENST00000471309 SLC26A10Q8NG04 563 aa8.36□□□□□ -1.07
VPS52-216ENST00000471309 OR9K2Q8NGE7 335 aa8.36□□□□□ -1.07
VPS52-216ENST00000471309 OR6N2Q8NGY6 317 aa8.36□□□□□ -1.07
VPS52-216ENST00000471309 OR10D3Q8NH80 312 aa8.36□□□□□ -1.07
VPS52-216ENST00000471309 OTOSQ8NHW6 89 aa8.36□□□□□ -1.07
VPS52-216ENST00000471309 RBP7Q96R05 134 aa8.36□□□□□ -1.07
VPS52-216ENST00000471309 UCN2Q96RP3 112 aa8.36□□□□□ -1.07
VPS52-216ENST00000471309 SMAD5Q99717 465 aaKnown RBP8.36□□□□□ -1.07
VPS52-216ENST00000471309 EMC6Q9BV81 110 aa8.36□□□□□ -1.07
VPS52-216ENST00000471309 SLC6A15Q9H2J7 730 aa8.36□□□□□ -1.07
VPS52-216ENST00000471309 TIGARQ9NQ88 270 aa8.36□□□□□ -1.07
VPS52-216ENST00000471309 MRPL22Q9NWU5 206 aaKnown RBP8.36□□□□□ -1.07
VPS52-216ENST00000471309 CCDC59Q9P031 241 aaKnown RBP8.36□□□□□ -1.07
VPS52-216ENST00000471309 SSR3Q9UNL2 185 aa8.36□□□□□ -1.07
VPS52-216ENST00000471309 RCE1Q9Y256 329 aa8.36□□□□□ -1.07
VPS52-216ENST00000471309 KLHDC2Q9Y2U9 406 aa8.36□□□□□ -1.07
VPS52-216ENST00000471309 MSRB2Q9Y3D2 182 aa8.36□□□□□ -1.07
VPS52-216ENST00000471309 KNTC1P50748 2209 aa8.35□□□□□ -1.07
VPS52-216ENST00000471309 DCHS1Q96JQ0 3298 aa8.35□□□□□ -1.07
VPS52-216ENST00000471309 IGHV3-15A0A0B4J1V0 119 aa8.35□□□□□ -1.07
VPS52-216ENST00000471309 TRDV1A0A1B0GX56 115 aa8.35□□□□□ -1.07
VPS52-216ENST00000471309 ZNF726A6NNF4 738 aa8.35□□□□□ -1.07
VPS52-216ENST00000471309 ZNF716A6NP11 495 aa8.35□□□□□ -1.07
VPS52-216ENST00000471309 PRR32B1ATL7 298 aa8.35□□□□□ -1.07
VPS52-216ENST00000471309 E9PI62 339 aa8.35□□□□□ -1.07
VPS52-216ENST00000471309 NPIPA2E9PIF3 369 aa8.35□□□□□ -1.07
VPS52-216ENST00000471309 NPIPA3F8WFD2 350 aa8.35□□□□□ -1.07
VPS52-216ENST00000471309 CXCL13O43927 109 aa8.35□□□□□ -1.07
VPS52-216ENST00000471309 SULT1C4O75897 302 aa8.35□□□□□ -1.07
VPS52-216ENST00000471309 ABHD16AO95870 558 aa8.35□□□□□ -1.07
VPS52-216ENST00000471309 HLA-DQA2P01906 255 aa8.35□□□□□ -1.07
VPS52-216ENST00000471309 HLA-DPB1P04440 258 aa8.35□□□□□ -1.07
VPS52-216ENST00000471309 CD1AP06126 327 aa8.35□□□□□ -1.07
VPS52-216ENST00000471309 SPINK2P20155 84 aa8.35□□□□□ -1.07
VPS52-216ENST00000471309 ALOX5APP20292 161 aa8.35□□□□□ -1.07
VPS52-216ENST00000471309 FGF9P31371 208 aaPredicted RBP8.35□□□□□ -1.07
VPS52-216ENST00000471309 TGFBR1P36897 503 aa8.35□□□□□ -1.07
VPS52-216ENST00000471309 EIF1AXP47813 144 aaKnown RBP8.35□□□□□ -1.07
VPS52-216ENST00000471309 SERPINB10P48595 397 aa8.35□□□□□ -1.07
VPS52-216ENST00000471309 TGM4P49221 684 aa8.35□□□□□ -1.07
VPS52-216ENST00000471309 STARP49675 285 aa8.35□□□□□ -1.07
VPS52-216ENST00000471309 ZNF133P52736 654 aaPredicted RBP8.35□□□□□ -1.07
VPS52-216ENST00000471309 GBX2P52951 348 aaPredicted RBP8.35□□□□□ -1.07
VPS52-216ENST00000471309 SUCLG1P53597 346 aaKnown RBP8.35□□□□□ -1.07
VPS52-216ENST00000471309 CLDN15P56746 228 aa8.35□□□□□ -1.07
VPS52-216ENST00000471309 CLDN17P56750 224 aa8.35□□□□□ -1.07
VPS52-216ENST00000471309 PPIAP62937 165 aaKnown RBP8.35□□□□□ -1.07
VPS52-216ENST00000471309 ADAM8P78325 824 aa8.35□□□□□ -1.07
VPS52-216ENST00000471309 CAMK2DQ13557 499 aa8.35□□□□□ -1.07
VPS52-216ENST00000471309 CDK5R1Q15078 307 aa8.35□□□□□ -1.07
VPS52-216ENST00000471309 TRAM1Q15629 374 aa8.35□□□□□ -1.07
VPS52-216ENST00000471309 ETFDHQ16134 617 aa8.35□□□□□ -1.07
VPS52-216ENST00000471309 PCK2Q16822 640 aa8.35□□□□□ -1.07
VPS52-216ENST00000471309 DGUOKQ16854 277 aa8.35□□□□□ -1.07
VPS52-216ENST00000471309 SOWAHCQ53LP3 525 aaPredicted RBP8.35□□□□□ -1.07
VPS52-216ENST00000471309 TEX30Q5JUR7 227 aa8.35□□□□□ -1.07
VPS52-216ENST00000471309 DMKNQ6E0U4 476 aaPredicted RBP8.35□□□□□ -1.07
VPS52-216ENST00000471309 IGFL3Q6UXB1 125 aa8.35□□□□□ -1.07
VPS52-216ENST00000471309 LINC00299Q6ZSB3 139 aa8.35□□□□□ -1.07
VPS52-216ENST00000471309 DPY19L4Q7Z388 723 aa8.35□□□□□ -1.07
VPS52-216ENST00000471309 PNPLA5Q7Z6Z6 429 aaPredicted RBP8.35□□□□□ -1.07
VPS52-216ENST00000471309 GLB1L2Q8IW92 636 aa8.35□□□□□ -1.07
VPS52-216ENST00000471309 TMEM123Q8N131 208 aa8.35□□□□□ -1.07
VPS52-216ENST00000471309 MEIOBQ8N635 442 aa8.35□□□□□ -1.07
VPS52-216ENST00000471309 NEIL3Q8TAT5 605 aa8.35□□□□□ -1.07
VPS52-216ENST00000471309 RPS4Y2Q8TD47 263 aa8.35□□□□□ -1.07
VPS52-216ENST00000471309 ASB17Q8WXJ9 295 aa8.35□□□□□ -1.07
VPS52-216ENST00000471309 PNPLA2Q96AD5 504 aa8.35□□□□□ -1.07
VPS52-216ENST00000471309 PELI1Q96FA3 418 aa8.35□□□□□ -1.07
VPS52-216ENST00000471309 TRMT61AQ96FX7 289 aaKnown RBP8.35□□□□□ -1.07
VPS52-216ENST00000471309 DACH2Q96NX9 599 aa8.35□□□□□ -1.07
VPS52-216ENST00000471309 OR2M2Q96R28 347 aa8.35□□□□□ -1.07
VPS52-216ENST00000471309 TTTY10Q9BZA0 68 aa8.35□□□□□ -1.07
VPS52-216ENST00000471309 ZDHHC11Q9H8X9 412 aa8.35□□□□□ -1.07
VPS52-216ENST00000471309 SIAEQ9HAT2 523 aa8.35□□□□□ -1.07
VPS52-216ENST00000471309 EXOSC4Q9NPD3 245 aaKnown RBP8.35□□□□□ -1.07
VPS52-216ENST00000471309 ACOXLQ9NUZ1 547 aa8.35□□□□□ -1.07
VPS52-216ENST00000471309 TXNL4BQ9NX01 149 aaKnown RBP8.35□□□□□ -1.07
VPS52-216ENST00000471309 PAQR5Q9NXK6 330 aaPredicted RBP8.35□□□□□ -1.07
VPS52-216ENST00000471309 KLHL9Q9P2J3 617 aa8.35□□□□□ -1.07
VPS52-216ENST00000471309 ST6GALNAC2Q9UJ37 374 aa8.35□□□□□ -1.07
VPS52-216ENST00000471309 LAMP5Q9UJQ1 280 aa8.35□□□□□ -1.07
VPS52-216ENST00000471309 GNG8Q9UK08 70 aa8.35□□□□□ -1.07
VPS52-216ENST00000471309 COA3Q9Y2R0 106 aaPredicted RBP8.35□□□□□ -1.07
VPS52-216ENST00000471309 PCDHGA9Q9Y5G4 932 aaKnown RBP8.35□□□□□ -1.07
VPS52-216ENST00000471309 CSAG2Q9Y5P2 127 aa8.35□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms