RNA–Protein interactions for RNA: ENST00000466159.6

SYNE1-217, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 2,610 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-217ENST00000466159 MPZL1O95297 269 aa8.06□□□□□ -1.12
SYNE1-217ENST00000466159 WNT11O96014 354 aa8.06□□□□□ -1.12
SYNE1-217ENST00000466159 PNPP00491 289 aa8.06□□□□□ -1.12
SYNE1-217ENST00000466159 RAB40ALP0C0E4 278 aa8.06□□□□□ -1.12
SYNE1-217ENST00000466159 ANXA3P12429 323 aa8.06□□□□□ -1.12
SYNE1-217ENST00000466159 AFF3P51826 1226 aaKnown RBP8.06□□□□□ -1.12
SYNE1-217ENST00000466159 FBXW4P57775 412 aa8.06□□□□□ -1.12
SYNE1-217ENST00000466159 RNF4P78317 190 aa8.06□□□□□ -1.12
SYNE1-217ENST00000466159 GPLD1P80108 840 aa8.06□□□□□ -1.12
SYNE1-217ENST00000466159 CAMK2BQ13554 666 aa8.06□□□□□ -1.12
SYNE1-217ENST00000466159 SLC17A1Q14916 467 aa8.06□□□□□ -1.12
SYNE1-217ENST00000466159 KIF26BQ2KJY2 2108 aa8.06□□□□□ -1.12
SYNE1-217ENST00000466159 GRINAQ7Z429 371 aa8.06□□□□□ -1.12
SYNE1-217ENST00000466159 MDGA2Q7Z553 956 aa8.06□□□□□ -1.12
SYNE1-217ENST00000466159 GLB1L2Q8IW92 636 aa8.06□□□□□ -1.12
SYNE1-217ENST00000466159 SIX5Q8N196 739 aa8.06□□□□□ -1.12
SYNE1-217ENST00000466159 PLPP5Q8NEB5 264 aa8.06□□□□□ -1.12
SYNE1-217ENST00000466159 STT3BQ8TCJ2 826 aa8.06□□□□□ -1.12
SYNE1-217ENST00000466159 RAB40AQ8WXH6 277 aa8.06□□□□□ -1.12
SYNE1-217ENST00000466159 OR8B4Q96RC9 309 aa8.06□□□□□ -1.12
SYNE1-217ENST00000466159 NKX3-1Q99801 234 aaPredicted RBP8.06□□□□□ -1.12
SYNE1-217ENST00000466159 OR10A4Q9H209 315 aa8.06□□□□□ -1.12
SYNE1-217ENST00000466159 TXNIPQ9H3M7 391 aa8.06□□□□□ -1.12
SYNE1-217ENST00000466159 EMC7Q9NPA0 242 aa8.06□□□□□ -1.12
SYNE1-217ENST00000466159 SLC23A1Q9UHI7 598 aa8.06□□□□□ -1.12
SYNE1-217ENST00000466159 MGAT4AQ9UM21 535 aa8.06□□□□□ -1.12
SYNE1-217ENST00000466159 ING4Q9UNL4 249 aa8.06□□□□□ -1.12
SYNE1-217ENST00000466159 GTF2A1LQ9UNN4 478 aa8.06□□□□□ -1.12
SYNE1-217ENST00000466159 ADAMTS20P59510 1910 aa8.06□□□□□ -1.12
SYNE1-217ENST00000466159 IGLV1-36A0A0B4J1U3 117 aa8.05□□□□□ -1.12
SYNE1-217ENST00000466159 SLC22A23A1A5C7 686 aa8.05□□□□□ -1.12
SYNE1-217ENST00000466159 OR6C76A6NM76 312 aa8.05□□□□□ -1.12
SYNE1-217ENST00000466159 ERVH48-1M5A8F1 160 aa8.05□□□□□ -1.12
SYNE1-217ENST00000466159 SSNA1O43805 119 aa8.05□□□□□ -1.12
SYNE1-217ENST00000466159 RAF1P04049 648 aa8.05□□□□□ -1.12
SYNE1-217ENST00000466159 FBXO45P0C2W1 286 aa8.05□□□□□ -1.12
SYNE1-217ENST00000466159 PSMB1P20618 241 aaKnown RBP8.05□□□□□ -1.12
SYNE1-217ENST00000466159 CCKBRP32239 447 aa8.05□□□□□ -1.12
SYNE1-217ENST00000466159 DCTDP32321 178 aa8.05□□□□□ -1.12
SYNE1-217ENST00000466159 VEGFCP49767 419 aa8.05□□□□□ -1.12
SYNE1-217ENST00000466159 RAG2P55895 527 aa8.05□□□□□ -1.12
SYNE1-217ENST00000466159 TAS2R20P59543 309 aa8.05□□□□□ -1.12
SYNE1-217ENST00000466159 ADAM8P78325 824 aa8.05□□□□□ -1.12
SYNE1-217ENST00000466159 RASGEF1BQ0VAM2 473 aa8.05□□□□□ -1.12
SYNE1-217ENST00000466159 SMAD2Q15796 467 aaKnown RBP8.05□□□□□ -1.12
SYNE1-217ENST00000466159 PRSS42Q7Z5A4 293 aa8.05□□□□□ -1.12
SYNE1-217ENST00000466159 ZNF431Q8TF32 576 aaPredicted RBP8.05□□□□□ -1.12
SYNE1-217ENST00000466159 TSEN15Q8WW01 171 aaKnown RBP8.05□□□□□ -1.12
SYNE1-217ENST00000466159 DNASE2BQ8WZ79 361 aa8.05□□□□□ -1.12
SYNE1-217ENST00000466159 MCHR2Q969V1 340 aa8.05□□□□□ -1.12
SYNE1-217ENST00000466159 PMEPA1Q969W9 287 aa8.05□□□□□ -1.12
SYNE1-217ENST00000466159 SLC7A5P2Q9GIP4 190 aa8.05□□□□□ -1.12
SYNE1-217ENST00000466159 ACTR6Q9GZN1 396 aa8.05□□□□□ -1.12
SYNE1-217ENST00000466159 DUSP15Q9H1R2 295 aaPredicted RBP8.05□□□□□ -1.12
SYNE1-217ENST00000466159 AKAP7Q9P0M2 348 aaPredicted RBP8.05□□□□□ -1.12
SYNE1-217ENST00000466159 RABL2AQ9UBK7 228 aaPredicted RBP8.05□□□□□ -1.12
SYNE1-217ENST00000466159 RABL2BQ9UNT1 228 aa8.05□□□□□ -1.12
SYNE1-217ENST00000466159 ANKRD20A5PA0PJZ0 165 aa8.05□□□□□ -1.12
SYNE1-217ENST00000466159 SOX1O00570 391 aaPredicted RBP8.05□□□□□ -1.12
SYNE1-217ENST00000466159 PHYHO14832 338 aa8.05□□□□□ -1.12
SYNE1-217ENST00000466159 SULT1B1O43704 296 aa8.05□□□□□ -1.12
SYNE1-217ENST00000466159 PEX14O75381 377 aa8.05□□□□□ -1.12
SYNE1-217ENST00000466159 ZNF432O94892 652 aa8.05□□□□□ -1.12
SYNE1-217ENST00000466159 ALX3O95076 343 aa8.05□□□□□ -1.12
SYNE1-217ENST00000466159 TIAF1O95411 115 aa8.05□□□□□ -1.12
SYNE1-217ENST00000466159 AHSA1O95433 338 aa8.05□□□□□ -1.12
SYNE1-217ENST00000466159 ECDO95905 644 aaPredicted RBP8.05□□□□□ -1.12
SYNE1-217ENST00000466159 CSRP1P21291 193 aaKnown RBP8.05□□□□□ -1.12
SYNE1-217ENST00000466159 EFNB2P52799 333 aa8.05□□□□□ -1.12
SYNE1-217ENST00000466159 STARD6P59095 220 aa8.05□□□□□ -1.12
SYNE1-217ENST00000466159 OR7E24Q6IFN5 339 aa8.05□□□□□ -1.12
SYNE1-217ENST00000466159 WDR74Q6RFH5 385 aaPredicted RBP8.05□□□□□ -1.12
SYNE1-217ENST00000466159 LYPD8Q6UX82 237 aa8.05□□□□□ -1.12
SYNE1-217ENST00000466159 MAMSTRQ6ZN01 415 aa8.05□□□□□ -1.12
SYNE1-217ENST00000466159 ZNF574Q6ZN55 896 aaPredicted RBP8.05□□□□□ -1.12
SYNE1-217ENST00000466159 CREB3L2Q70SY1 520 aa8.05□□□□□ -1.12
SYNE1-217ENST00000466159 ZNF679Q8IYX0 411 aa8.05□□□□□ -1.12
SYNE1-217ENST00000466159 APCDD1LQ8NCL9 501 aa8.05□□□□□ -1.12
SYNE1-217ENST00000466159 OR51D1Q8NGF3 324 aa8.05□□□□□ -1.12
SYNE1-217ENST00000466159 ARL5BQ96KC2 179 aa8.05□□□□□ -1.12
SYNE1-217ENST00000466159 MRI1Q9BV20 369 aa8.05□□□□□ -1.12
SYNE1-217ENST00000466159 KCNK15Q9H427 330 aa8.05□□□□□ -1.12
SYNE1-217ENST00000466159 ZNF768Q9H5H4 540 aaKnown RBP8.05□□□□□ -1.12
SYNE1-217ENST00000466159 VSX1Q9NZR4 365 aaPredicted RBP8.05□□□□□ -1.12
SYNE1-217ENST00000466159 ETV7Q9Y603 341 aa8.05□□□□□ -1.12
SYNE1-217ENST00000466159 TNRC18O15417 2968 aaPredicted RBP8.04□□□□□ -1.12
SYNE1-217ENST00000466159 DOK2O60496 412 aa8.04□□□□□ -1.12
SYNE1-217ENST00000466159 TMEM127O75204 238 aa8.04□□□□□ -1.12
SYNE1-217ENST00000466159 SULT1A3P0DMM9 295 aa8.04□□□□□ -1.12
SYNE1-217ENST00000466159 SULT1A4P0DMN0 295 aa8.04□□□□□ -1.12
SYNE1-217ENST00000466159 ZP1P60852 638 aa8.04□□□□□ -1.12
SYNE1-217ENST00000466159 MFGE8Q08431 387 aaPredicted RBP8.04□□□□□ -1.12
SYNE1-217ENST00000466159 SHBQ15464 509 aa8.04□□□□□ -1.12
SYNE1-217ENST00000466159 ASPHD2Q6ICH7 369 aa8.04□□□□□ -1.12
SYNE1-217ENST00000466159 SLC18B1Q6NT16 456 aa8.04□□□□□ -1.12
SYNE1-217ENST00000466159 Q6ZTK2 550 aa8.04□□□□□ -1.12
SYNE1-217ENST00000466159 KRT77Q7Z794 578 aa8.04□□□□□ -1.12
SYNE1-217ENST00000466159 WDFY1Q8IWB7 410 aa8.04□□□□□ -1.12
SYNE1-217ENST00000466159 SPEM1Q8N4L4 309 aa8.04□□□□□ -1.12
SYNE1-217ENST00000466159 C8orf44Q96CB5 159 aa8.04□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 53.1 ms