RNA–Protein interactions for RNA: ENST00000461520.5

USP54-208, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 1,212 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-208ENST00000461520 HIPK1Q86Z02 1210 aa6.31□□□□□ -1.4
USP54-208ENST00000461520 PHC2Q8IXK0 858 aa6.31□□□□□ -1.4
USP54-208ENST00000461520 CADM2Q8N3J6 435 aa6.31□□□□□ -1.4
USP54-208ENST00000461520 MGARPQ8TDB4 240 aa6.31□□□□□ -1.4
USP54-208ENST00000461520 SLC35B4Q969S0 331 aa6.31□□□□□ -1.4
USP54-208ENST00000461520 AURKBQ96GD4 344 aaPredicted RBP6.31□□□□□ -1.4
USP54-208ENST00000461520 TMEM19Q96HH6 336 aa6.31□□□□□ -1.4
USP54-208ENST00000461520 ZNF385AQ96PM9 386 aaKnown RBP6.31□□□□□ -1.4
USP54-208ENST00000461520 C1QTNF6Q9BXI9 259 aa6.31□□□□□ -1.4
USP54-208ENST00000461520 CACYBPQ9HB71 228 aaKnown RBP6.31□□□□□ -1.4
USP54-208ENST00000461520 BCL2L10Q9HD36 194 aa6.31□□□□□ -1.4
USP54-208ENST00000461520 TMEM45AQ9NWC5 275 aa6.31□□□□□ -1.4
USP54-208ENST00000461520 ADPRHL2Q9NX46 363 aa6.31□□□□□ -1.4
USP54-208ENST00000461520 NKIRAS1Q9NYS0 192 aa6.31□□□□□ -1.4
USP54-208ENST00000461520 RASD1Q9Y272 281 aa6.31□□□□□ -1.4
USP54-208ENST00000461520 ZNF443Q9Y2A4 671 aaPredicted RBP6.31□□□□□ -1.4
USP54-208ENST00000461520 CR1P17927 2039 aa6.31□□□□□ -1.4
USP54-208ENST00000461520 ABCA1O95477 2261 aa6.3□□□□□ -1.4
USP54-208ENST00000461520 IGHV4-30-2A0A087WSY4 118 aa6.3□□□□□ -1.4
USP54-208ENST00000461520 A0A096LNT2 108 aa6.3□□□□□ -1.4
USP54-208ENST00000461520 A8MV72 311 aaPredicted RBP6.3□□□□□ -1.4
USP54-208ENST00000461520 ZNF587BE7ETH6 402 aa6.3□□□□□ -1.4
USP54-208ENST00000461520 FRS3O43559 492 aa6.3□□□□□ -1.4
USP54-208ENST00000461520 KRT33AO76009 404 aa6.3□□□□□ -1.4
USP54-208ENST00000461520 JTBO76095 146 aa6.3□□□□□ -1.4
USP54-208ENST00000461520 IFNA2P01563 188 aa6.3□□□□□ -1.4
USP54-208ENST00000461520 CSF3P09919 207 aa6.3□□□□□ -1.4
USP54-208ENST00000461520 SLC25A16P16260 332 aa6.3□□□□□ -1.4
USP54-208ENST00000461520 P2RY4P51582 365 aa6.3□□□□□ -1.4
USP54-208ENST00000461520 EFNA4P52798 201 aa6.3□□□□□ -1.4
USP54-208ENST00000461520 MAGOHP61326 146 aaKnown RBP6.3□□□□□ -1.4
USP54-208ENST00000461520 LOXL1Q08397 574 aaPredicted RBP6.3□□□□□ -1.4
USP54-208ENST00000461520 BNIP2Q12982 314 aa6.3□□□□□ -1.4
USP54-208ENST00000461520 FADDQ13158 208 aa6.3□□□□□ -1.4
USP54-208ENST00000461520 RGNQ15493 299 aa6.3□□□□□ -1.4
USP54-208ENST00000461520 GTDC1Q4AE62 458 aa6.3□□□□□ -1.4
USP54-208ENST00000461520 MTX3Q5HYI7 312 aa6.3□□□□□ -1.4
USP54-208ENST00000461520 ZNF311Q5JNZ3 666 aa6.3□□□□□ -1.4
USP54-208ENST00000461520 C6orf10Q5SRN2 563 aa6.3□□□□□ -1.4
USP54-208ENST00000461520 SFRP4Q6FHJ7 346 aaPredicted RBP6.3□□□□□ -1.4
USP54-208ENST00000461520 PODNL1Q6PEZ8 512 aa6.3□□□□□ -1.4
USP54-208ENST00000461520 ZNF66Q6ZN08 573 aa6.3□□□□□ -1.4
USP54-208ENST00000461520 CREB3L2Q70SY1 520 aa6.3□□□□□ -1.4
USP54-208ENST00000461520 SERPINA11Q86U17 422 aa6.3□□□□□ -1.4
USP54-208ENST00000461520 CLIP4Q8N3C7 705 aa6.3□□□□□ -1.4
USP54-208ENST00000461520 OR9I1Q8NGQ6 314 aa6.3□□□□□ -1.4
USP54-208ENST00000461520 OR1K1Q8NGR3 316 aa6.3□□□□□ -1.4
USP54-208ENST00000461520 MFSD8Q8NHS3 518 aa6.3□□□□□ -1.4
USP54-208ENST00000461520 MAGEE2Q8TD90 523 aaPredicted RBP6.3□□□□□ -1.4
USP54-208ENST00000461520 GTF2H4Q92759 462 aa6.3□□□□□ -1.4
USP54-208ENST00000461520 VPS33AQ96AX1 596 aa6.3□□□□□ -1.4
USP54-208ENST00000461520 C3orf49Q96BT1 292 aa6.3□□□□□ -1.4
USP54-208ENST00000461520 TLCD1Q96CP7 247 aa6.3□□□□□ -1.4
USP54-208ENST00000461520 ZNF317Q96PQ6 595 aaPredicted RBP6.3□□□□□ -1.4
USP54-208ENST00000461520 OR52B2Q96RD2 323 aa6.3□□□□□ -1.4
USP54-208ENST00000461520 TNFRSF13CQ96RJ3 184 aa6.3□□□□□ -1.4
USP54-208ENST00000461520 PTDSS2Q9BVG9 487 aa6.3□□□□□ -1.4
USP54-208ENST00000461520 LINC00470Q9BZP3 86 aa6.3□□□□□ -1.4
USP54-208ENST00000461520 RAD21L1Q9H4I0 556 aa6.3□□□□□ -1.4
USP54-208ENST00000461520 C12orf10Q9HB07 376 aa6.3□□□□□ -1.4
USP54-208ENST00000461520 MOV10Q9HCE1 1003 aaKnown RBP6.3□□□□□ -1.4
USP54-208ENST00000461520 YAE1D1Q9NRH1 226 aa6.3□□□□□ -1.4
USP54-208ENST00000461520 PRR14LQ5THK1 2151 aa6.3□□□□□ -1.4
USP54-208ENST00000461520 ARPC4-TTLL3A0A0A6YYG9 625 aa6.29□□□□□ -1.4
USP54-208ENST00000461520 IGHV1-18A0A0C4DH31 117 aa6.29□□□□□ -1.4
USP54-208ENST00000461520 C5orf58C9J3I9 102 aa6.29□□□□□ -1.4
USP54-208ENST00000461520 FTCDNL1E5RQL4 147 aa6.29□□□□□ -1.4
USP54-208ENST00000461520 ATP6V1G2-DDX39BF2Z307 99 aa6.29□□□□□ -1.4
USP54-208ENST00000461520 RPL36A-HNRNPH2H7BZ11 118 aa6.29□□□□□ -1.4
USP54-208ENST00000461520 CLIC1O00299 241 aa6.29□□□□□ -1.4
USP54-208ENST00000461520 OR2T1O43869 369 aa6.29□□□□□ -1.4
USP54-208ENST00000461520 GPRIN2O60269 458 aa6.29□□□□□ -1.4
USP54-208ENST00000461520 ERLIN1O75477 346 aa6.29□□□□□ -1.4
USP54-208ENST00000461520 AHSA1O95433 338 aa6.29□□□□□ -1.4
USP54-208ENST00000461520 GRPP07492 148 aa6.29□□□□□ -1.4
USP54-208ENST00000461520 PF4V1P10720 104 aa6.29□□□□□ -1.4
USP54-208ENST00000461520 PRG2P13727 222 aa6.29□□□□□ -1.4
USP54-208ENST00000461520 ETS2P15036 469 aa6.29□□□□□ -1.4
USP54-208ENST00000461520 ZNF43P17038 809 aa6.29□□□□□ -1.4
USP54-208ENST00000461520 CDH2P19022 906 aaPredicted RBP6.29□□□□□ -1.4
USP54-208ENST00000461520 PRKAR1BP31321 381 aa6.29□□□□□ -1.4
USP54-208ENST00000461520 MRPL19P49406 292 aaKnown RBP6.29□□□□□ -1.4
USP54-208ENST00000461520 SH3BGRP55822 239 aaPredicted RBP6.29□□□□□ -1.4
USP54-208ENST00000461520 LOXL3P58215 753 aa6.29□□□□□ -1.4
USP54-208ENST00000461520 UBE2NP61088 152 aaKnown RBP6.29□□□□□ -1.4
USP54-208ENST00000461520 VLDLRP98155 873 aa6.29□□□□□ -1.4
USP54-208ENST00000461520 TMEM249Q2WGJ8 235 aa6.29□□□□□ -1.4
USP54-208ENST00000461520 TBRG1Q3YBR2 411 aa6.29□□□□□ -1.4
USP54-208ENST00000461520 CHRFAM7AQ494W8 412 aa6.29□□□□□ -1.4
USP54-208ENST00000461520 HIKESHIQ53FT3 197 aa6.29□□□□□ -1.4
USP54-208ENST00000461520 ZNF626Q68DY1 528 aa6.29□□□□□ -1.4
USP54-208ENST00000461520 NIPAL3Q6P499 406 aa6.29□□□□□ -1.4
USP54-208ENST00000461520 ANKRD16Q6P6B7 361 aa6.29□□□□□ -1.4
USP54-208ENST00000461520 EPGNQ6UW88 154 aa6.29□□□□□ -1.4
USP54-208ENST00000461520 C5orf46Q6UWT4 87 aa6.29□□□□□ -1.4
USP54-208ENST00000461520 C6orf89Q6UWU4 347 aa6.29□□□□□ -1.4
USP54-208ENST00000461520 EPHX4Q8IUS5 362 aa6.29□□□□□ -1.4
USP54-208ENST00000461520 ZNF525Q8N782 197 aa6.29□□□□□ -1.4
USP54-208ENST00000461520 LSMEM1Q8N8F7 131 aa6.29□□□□□ -1.4
USP54-208ENST00000461520 BBS10Q8TAM1 723 aa6.29□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms