RNA–Protein interactions for RNA: ENST00000451859.5

RFX3-209, Transcript of regulatory factor X3, human

TSL 3

Gene RFX3, Length 740 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RFX3-209	ENST00000451859	COX4I1	P13073	169 aa		7.48	□□□□□ -1.21
RFX3-209	ENST00000451859	IFI30	P13284	250 aa		7.48	□□□□□ -1.21
RFX3-209	ENST00000451859	CCL2	P13500	99 aa		7.48	□□□□□ -1.21
RFX3-209	ENST00000451859	APEH	P13798	732 aa	Known RBP	7.48	□□□□□ -1.21
RFX3-209	ENST00000451859	DAO	P14920	347 aa		7.48	□□□□□ -1.21
RFX3-209	ENST00000451859	ZNF14	P17017	642 aa	Predicted RBP	7.48	□□□□□ -1.21
RFX3-209	ENST00000451859	TCN1	P20061	433 aa	Predicted RBP	7.48	□□□□□ -1.21
RFX3-209	ENST00000451859	FUT4	P22083	530 aa		7.48	□□□□□ -1.21
RFX3-209	ENST00000451859	NR4A1	P22736	598 aa		7.48	□□□□□ -1.21
RFX3-209	ENST00000451859	LSP1	P33241	339 aa		7.48	□□□□□ -1.21
RFX3-209	ENST00000451859	MDH1	P40925	334 aa	Known RBP	7.48	□□□□□ -1.21
RFX3-209	ENST00000451859	RBM34	P42696	430 aa	Known RBP	7.48	□□□□□ -1.21
RFX3-209	ENST00000451859	NR4A2	P43354	598 aa		7.48	□□□□□ -1.21
RFX3-209	ENST00000451859	PPOX	P50336	477 aa		7.48	□□□□□ -1.21
RFX3-209	ENST00000451859	NUDT2	P50583	147 aa		7.48	□□□□□ -1.21
RFX3-209	ENST00000451859	SLC7A2	P52569	658 aa		7.48	□□□□□ -1.21
RFX3-209	ENST00000451859	VLDLR	P98155	873 aa		7.48	□□□□□ -1.21
RFX3-209	ENST00000451859	LIPE	Q05469	1076 aa		7.48	□□□□□ -1.21
RFX3-209	ENST00000451859	FMOD	Q06828	376 aa		7.48	□□□□□ -1.21
RFX3-209	ENST00000451859	CD47	Q08722	323 aa		7.48	□□□□□ -1.21
RFX3-209	ENST00000451859	MAD2L1BP	Q15013	274 aa	Predicted RBP	7.48	□□□□□ -1.21
RFX3-209	ENST00000451859	MSMP	Q1L6U9	139 aa		7.48	□□□□□ -1.21
RFX3-209	ENST00000451859	ALKBH6	Q3KRA9	238 aa		7.48	□□□□□ -1.21
RFX3-209	ENST00000451859	CHRFAM7A	Q494W8	412 aa		7.48	□□□□□ -1.21
RFX3-209	ENST00000451859	LRFN4	Q6PJG9	635 aa		7.48	□□□□□ -1.21
RFX3-209	ENST00000451859	IL17REL	Q6ZVW7	336 aa		7.48	□□□□□ -1.21
RFX3-209	ENST00000451859	IGFN1	Q86VF2	1251 aa		7.48	□□□□□ -1.21
RFX3-209	ENST00000451859	LRRC18	Q8N456	261 aa		7.48	□□□□□ -1.21
RFX3-209	ENST00000451859	ICA1L	Q8NDH6	482 aa		7.48	□□□□□ -1.21
RFX3-209	ENST00000451859	IL17RD	Q8NFM7	739 aa		7.48	□□□□□ -1.21
RFX3-209	ENST00000451859	ASB10	Q8WXI3	467 aa		7.48	□□□□□ -1.21
RFX3-209	ENST00000451859	NSMAF	Q92636	917 aa		7.48	□□□□□ -1.21
RFX3-209	ENST00000451859	MCHR2	Q969V1	340 aa		7.48	□□□□□ -1.21
RFX3-209	ENST00000451859	FOXN4	Q96NZ1	517 aa		7.48	□□□□□ -1.21
RFX3-209	ENST00000451859	DOK1	Q99704	481 aa		7.48	□□□□□ -1.21
RFX3-209	ENST00000451859	MRPL37	Q9BZE1	423 aa	Known RBP	7.48	□□□□□ -1.21
RFX3-209	ENST00000451859	BPESC1	Q9GZL8	116 aa		7.48	□□□□□ -1.21
RFX3-209	ENST00000451859	FAM107B	Q9H098	131 aa		7.48	□□□□□ -1.21
RFX3-209	ENST00000451859	MED31	Q9Y3C7	131 aa		7.48	□□□□□ -1.21
RFX3-209	ENST00000451859	CMAHP	Q9Y471	501 aa		7.48	□□□□□ -1.21
RFX3-209	ENST00000451859	SPEF1	Q9Y4P9	236 aa		7.48	□□□□□ -1.21
RFX3-209	ENST00000451859	SNX13	Q9Y5W8	968 aa		7.48	□□□□□ -1.21
RFX3-209	ENST00000451859	COL6A5	A8TX70	2615 aa		7.48	□□□□□ -1.21
RFX3-209	ENST00000451859	TRAV27	A0A087WT01	109 aa		7.47	□□□□□ -1.21
RFX3-209	ENST00000451859	IGHV4-61	A0A0C4DH41	118 aa		7.47	□□□□□ -1.21
RFX3-209	ENST00000451859		A0A1W2PPW3	197 aa		7.47	□□□□□ -1.21
RFX3-209	ENST00000451859	LOC390937	A0A1W2PQ73	354 aa		7.47	□□□□□ -1.21
RFX3-209	ENST00000451859	TMEM129	A0AVI4	362 aa		7.47	□□□□□ -1.21
RFX3-209	ENST00000451859	LRP5L	A4QPB2	252 aa		7.47	□□□□□ -1.21
RFX3-209	ENST00000451859		M0R233	179 aa		7.47	□□□□□ -1.21
RFX3-209	ENST00000451859	CXCR6	O00574	342 aa		7.47	□□□□□ -1.21
RFX3-209	ENST00000451859	TRMU	O75648	421 aa	Known RBP	7.47	□□□□□ -1.21
RFX3-209	ENST00000451859	SLC2A10	O95528	541 aa		7.47	□□□□□ -1.21
RFX3-209	ENST00000451859	IFNW1	P05000	195 aa		7.47	□□□□□ -1.21
RFX3-209	ENST00000451859	SAG	P10523	405 aa	Predicted RBP	7.47	□□□□□ -1.21
RFX3-209	ENST00000451859	ACADS	P16219	412 aa		7.47	□□□□□ -1.21
RFX3-209	ENST00000451859	NCK1	P16333	377 aa		7.47	□□□□□ -1.21
RFX3-209	ENST00000451859	CDA	P32320	146 aa		7.47	□□□□□ -1.21
RFX3-209	ENST00000451859	ALDH3B1	P43353	468 aa		7.47	□□□□□ -1.21
RFX3-209	ENST00000451859	DAP3	P51398	398 aa	Known RBP	7.47	□□□□□ -1.21
RFX3-209	ENST00000451859	ZNF84	P51523	738 aa		7.47	□□□□□ -1.21
RFX3-209	ENST00000451859	SELENOW	P63302	87 aa		7.47	□□□□□ -1.21
RFX3-209	ENST00000451859	TNP2	Q05952	138 aa		7.47	□□□□□ -1.21
RFX3-209	ENST00000451859	CYB5R2	Q6BCY4	276 aa		7.47	□□□□□ -1.21
RFX3-209	ENST00000451859	TMEM53	Q6P2H8	277 aa		7.47	□□□□□ -1.21
RFX3-209	ENST00000451859	ZNF627	Q7L945	461 aa		7.47	□□□□□ -1.21
RFX3-209	ENST00000451859	SLC16A14	Q7RTX9	510 aa		7.47	□□□□□ -1.21
RFX3-209	ENST00000451859	PIWIL3	Q7Z3Z3	882 aa	Known RBP	7.47	□□□□□ -1.21
RFX3-209	ENST00000451859	ARPIN	Q7Z6K5	226 aa		7.47	□□□□□ -1.21
RFX3-209	ENST00000451859	LRP11	Q86VZ4	500 aa		7.47	□□□□□ -1.21
RFX3-209	ENST00000451859	TREML1	Q86YW5	311 aa		7.47	□□□□□ -1.21
RFX3-209	ENST00000451859	ZNF584	Q8IVC4	421 aa		7.47	□□□□□ -1.21
RFX3-209	ENST00000451859	SLC15A3	Q8IY34	581 aa		7.47	□□□□□ -1.21
RFX3-209	ENST00000451859	PAQR4	Q8N4S7	273 aa	Predicted RBP	7.47	□□□□□ -1.21
RFX3-209	ENST00000451859	CLDN22	Q8N7P3	220 aa		7.47	□□□□□ -1.21
RFX3-209	ENST00000451859	ARIH2OS	Q8N7S6	290 aa		7.47	□□□□□ -1.21
RFX3-209	ENST00000451859	RBM15B	Q8NDT2	890 aa	Known RBP	7.47	□□□□□ -1.21
RFX3-209	ENST00000451859	SLC30A7	Q8NEW0	376 aa		7.47	□□□□□ -1.21
RFX3-209	ENST00000451859	OR51A7	Q8NH64	312 aa		7.47	□□□□□ -1.21
RFX3-209	ENST00000451859	RP9	Q8TA86	221 aa	Known RBP	7.47	□□□□□ -1.21
RFX3-209	ENST00000451859	LZIC	Q8WZA0	190 aa		7.47	□□□□□ -1.21
RFX3-209	ENST00000451859	HDAC2	Q92769	488 aa	Known RBP	7.47	□□□□□ -1.21
RFX3-209	ENST00000451859	FAM162A	Q96A26	154 aa		7.47	□□□□□ -1.21
RFX3-209	ENST00000451859	MRPL24	Q96A35	216 aa	Known RBP	7.47	□□□□□ -1.21
RFX3-209	ENST00000451859	PRRC1	Q96M27	445 aa		7.47	□□□□□ -1.21
RFX3-209	ENST00000451859	ZNF75A	Q96N20	296 aa		7.47	□□□□□ -1.21
RFX3-209	ENST00000451859	SNX18	Q96RF0	628 aa		7.47	□□□□□ -1.21
RFX3-209	ENST00000451859	POLR2J2	Q9GZM3	115 aa	Known RBP	7.47	□□□□□ -1.21
RFX3-209	ENST00000451859	POLR2J3	Q9H1A7	115 aa	Known RBP	7.47	□□□□□ -1.21
RFX3-209	ENST00000451859	CCDC134	Q9H6E4	229 aa		7.47	□□□□□ -1.21
RFX3-209	ENST00000451859	CDH20	Q9HBT6	801 aa		7.47	□□□□□ -1.21
RFX3-209	ENST00000451859	MED4	Q9NPJ6	270 aa		7.47	□□□□□ -1.21
RFX3-209	ENST00000451859	MYEF2	Q9P2K5	600 aa	Known RBP	7.47	□□□□□ -1.21
RFX3-209	ENST00000451859	SLC7A8	Q9UHI5	535 aa		7.47	□□□□□ -1.21
RFX3-209	ENST00000451859	DUSP13	Q9UII6	198 aa		7.47	□□□□□ -1.21
RFX3-209	ENST00000451859	A4GNT	Q9UNA3	340 aa		7.47	□□□□□ -1.21
RFX3-209	ENST00000451859	ARHGAP32	A7KAX9	2087 aa		7.47	□□□□□ -1.21
RFX3-209	ENST00000451859	DYSF	O75923	2080 aa		7.47	□□□□□ -1.21
RFX3-209	ENST00000451859	LOC100289279	A0A1B0GTE1	492 aa		7.46	□□□□□ -1.22
RFX3-209	ENST00000451859	VWC2L	B2RUY7	222 aa		7.46	□□□□□ -1.22

Retrieved 100 of 20,778 RNA–protein pairs in 66.6 ms