RNA–Protein interactions for RNA: ENST00000447578.6

VPS29-202, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 996 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-202ENST00000447578 NDUFAF1Q9Y375 327 aa3.42□□□□□ -1.86
VPS29-202ENST00000447578 AP4S1Q9Y587 144 aa3.42□□□□□ -1.86
VPS29-202ENST00000447578 DNAJC15Q9Y5T4 150 aa3.42□□□□□ -1.86
VPS29-202ENST00000447578 SMAD5-AS1Q9Y6J3 95 aa3.42□□□□□ -1.86
VPS29-202ENST00000447578 SLCO1B1Q9Y6L6 691 aa3.42□□□□□ -1.86
VPS29-202ENST00000447578 TCRBV3S1A0A5B6 114 aa3.41□□□□□ -1.86
VPS29-202ENST00000447578 METTL21EPA6NDL7 271 aa3.41□□□□□ -1.86
VPS29-202ENST00000447578 FAM74A7A6NL05 159 aa3.41□□□□□ -1.86
VPS29-202ENST00000447578 RNF212BA8MTL3 300 aa3.41□□□□□ -1.86
VPS29-202ENST00000447578 K7ERQ8 282 aa3.41□□□□□ -1.86
VPS29-202ENST00000447578 PDLIM1O00151 329 aa3.41□□□□□ -1.86
VPS29-202ENST00000447578 NME4O00746 187 aa3.41□□□□□ -1.86
VPS29-202ENST00000447578 CD160O95971 181 aa3.41□□□□□ -1.86
VPS29-202ENST00000447578 ALPIP09923 528 aa3.41□□□□□ -1.86
VPS29-202ENST00000447578 PATE4P0C8F1 98 aa3.41□□□□□ -1.86
VPS29-202ENST00000447578 ADORA3P0DMS8 318 aa3.41□□□□□ -1.86
VPS29-202ENST00000447578 ANXA3P12429 323 aa3.41□□□□□ -1.86
VPS29-202ENST00000447578 IDO1P14902 403 aa3.41□□□□□ -1.86
VPS29-202ENST00000447578 CPN1P15169 458 aa3.41□□□□□ -1.86
VPS29-202ENST00000447578 HMGA1P17096 107 aaKnown RBP3.41□□□□□ -1.86
VPS29-202ENST00000447578 ATP6V1B2P21281 511 aa3.41□□□□□ -1.86
VPS29-202ENST00000447578 UCP1P25874 307 aa3.41□□□□□ -1.86
VPS29-202ENST00000447578 PRDX3P30048 256 aaKnown RBP3.41□□□□□ -1.86
VPS29-202ENST00000447578 HSPA13P48723 471 aa3.41□□□□□ -1.86
VPS29-202ENST00000447578 TTPAP49638 278 aa3.41□□□□□ -1.86
VPS29-202ENST00000447578 PLA2G16P53816 162 aa3.41□□□□□ -1.86
VPS29-202ENST00000447578 ERVPABLB-1P60509 514 aa3.41□□□□□ -1.86
VPS29-202ENST00000447578 NAA20P61599 178 aa3.41□□□□□ -1.86
VPS29-202ENST00000447578 FGL1Q08830 312 aa3.41□□□□□ -1.86
VPS29-202ENST00000447578 TWF1Q12792 350 aa3.41□□□□□ -1.86
VPS29-202ENST00000447578 EIF2B1Q14232 305 aaKnown RBP3.41□□□□□ -1.86
VPS29-202ENST00000447578 GK3PQ14409 553 aa3.41□□□□□ -1.86
VPS29-202ENST00000447578 CD226Q15762 336 aa3.41□□□□□ -1.86
VPS29-202ENST00000447578 UBE2V2Q15819 145 aa3.41□□□□□ -1.86
VPS29-202ENST00000447578 NRF1Q16656 503 aa3.41□□□□□ -1.86
VPS29-202ENST00000447578 C18orf21Q32NC0 220 aaPredicted RBP3.41□□□□□ -1.86
VPS29-202ENST00000447578 VPS26BQ4G0F5 336 aa3.41□□□□□ -1.86
VPS29-202ENST00000447578 FAM74A3Q4VXF1 159 aa3.41□□□□□ -1.86
VPS29-202ENST00000447578 LIN52Q52LA3 116 aa3.41□□□□□ -1.86
VPS29-202ENST00000447578 ARMC12Q5T9G4 340 aa3.41□□□□□ -1.86
VPS29-202ENST00000447578 PTRHD1Q6GMV3 140 aaKnown RBP3.41□□□□□ -1.86
VPS29-202ENST00000447578 SLC8B1Q6J4K2 584 aa3.41□□□□□ -1.86
VPS29-202ENST00000447578 PRMT9Q6P2P2 845 aa3.41□□□□□ -1.86
VPS29-202ENST00000447578 FAM151BQ6UXP7 276 aa3.41□□□□□ -1.86
VPS29-202ENST00000447578 TMEM184AQ6ZMB5 413 aa3.41□□□□□ -1.86
VPS29-202ENST00000447578 CYHR1Q6ZMK1 362 aa3.41□□□□□ -1.86
VPS29-202ENST00000447578 GPRIN3Q6ZVF9 776 aa3.41□□□□□ -1.86
VPS29-202ENST00000447578 FRA10AC1Q70Z53 315 aa3.41□□□□□ -1.86
VPS29-202ENST00000447578 NANOGNBQ7Z5D8 188 aa3.41□□□□□ -1.86
VPS29-202ENST00000447578 IFNEQ86WN2 208 aa3.41□□□□□ -1.86
VPS29-202ENST00000447578 PIANPQ8IYJ0 282 aa3.41□□□□□ -1.86
VPS29-202ENST00000447578 SAMD12Q8N8I0 201 aa3.41□□□□□ -1.86
VPS29-202ENST00000447578 SYT14Q8NB59 555 aa3.41□□□□□ -1.86
VPS29-202ENST00000447578 OR8J1Q8NGP2 316 aa3.41□□□□□ -1.86
VPS29-202ENST00000447578 OR6K2Q8NGY2 324 aa3.41□□□□□ -1.86
VPS29-202ENST00000447578 ZNF519Q8TB69 540 aa3.41□□□□□ -1.86
VPS29-202ENST00000447578 FAM110BQ8TC76 370 aa3.41□□□□□ -1.86
VPS29-202ENST00000447578 CD200R1Q8TD46 325 aa3.41□□□□□ -1.86
VPS29-202ENST00000447578 NAT14Q8WUY8 206 aa3.41□□□□□ -1.86
VPS29-202ENST00000447578 EEF1AKMT1Q8WVE0 214 aa3.41□□□□□ -1.86
VPS29-202ENST00000447578 TBRG4Q969Z0 631 aaKnown RBP eCLIP3.41□□□□□ -1.86
VPS29-202ENST00000447578 PPWD1Q96BP3 646 aaKnown RBP3.41□□□□□ -1.86
VPS29-202ENST00000447578 ROPN1LQ96C74 230 aa3.41□□□□□ -1.86
VPS29-202ENST00000447578 LRRC58Q96CX6 371 aa3.41□□□□□ -1.86
VPS29-202ENST00000447578 DUS3LQ96G46 650 aaKnown RBP3.41□□□□□ -1.86
VPS29-202ENST00000447578 BIRC8Q96P09 236 aa3.41□□□□□ -1.86
VPS29-202ENST00000447578 HOPXQ9BPY8 73 aaPredicted RBP3.41□□□□□ -1.86
VPS29-202ENST00000447578 C19orf43Q9BQ61 176 aa3.41□□□□□ -1.86
VPS29-202ENST00000447578 TMEM43Q9BTV4 400 aa3.41□□□□□ -1.86
VPS29-202ENST00000447578 RPP25Q9BUL9 199 aaKnown RBP3.41□□□□□ -1.86
VPS29-202ENST00000447578 C1orf50Q9BV19 199 aa3.41□□□□□ -1.86
VPS29-202ENST00000447578 MRPS26Q9BYN8 205 aaKnown RBP3.41□□□□□ -1.86
VPS29-202ENST00000447578 TM6SF2Q9BZW4 377 aa3.41□□□□□ -1.86
VPS29-202ENST00000447578 COMMD4Q9H0A8 199 aa3.41□□□□□ -1.86
VPS29-202ENST00000447578 WDR13Q9H1Z4 485 aa3.41□□□□□ -1.86
VPS29-202ENST00000447578 SP140LQ9H930 580 aa3.41□□□□□ -1.86
VPS29-202ENST00000447578 GPN2Q9H9Y4 310 aaPredicted RBP3.41□□□□□ -1.86
VPS29-202ENST00000447578 FN3KRPQ9HA64 309 aa3.41□□□□□ -1.86
VPS29-202ENST00000447578 PLCXD1Q9NUJ7 323 aa3.41□□□□□ -1.86
VPS29-202ENST00000447578 CMTM6Q9NX76 183 aa3.41□□□□□ -1.86
VPS29-202ENST00000447578 UBAP1Q9NZ09 502 aa3.41□□□□□ -1.86
VPS29-202ENST00000447578 NUDT4Q9NZJ9 180 aa3.41□□□□□ -1.86
VPS29-202ENST00000447578 THYN1Q9P016 225 aa3.41□□□□□ -1.86
VPS29-202ENST00000447578 TMCO1Q9UM00 188 aa3.41□□□□□ -1.86
VPS29-202ENST00000447578 EIF3LQ9Y262 564 aaKnown RBP3.41□□□□□ -1.86
VPS29-202ENST00000447578 PYGO1Q9Y3Y4 419 aa3.41□□□□□ -1.86
VPS29-202ENST00000447578 TRIP11Q15643 1979 aa3.41□□□□□ -1.86
VPS29-202ENST00000447578 SCN10AQ9Y5Y9 1956 aa3.41□□□□□ -1.86
VPS29-202ENST00000447578 PATJQ8NI35 1801 aa3.4□□□□□ -1.86
VPS29-202ENST00000447578 IGHV3-20A0A0C4DH32 117 aa3.4□□□□□ -1.87
VPS29-202ENST00000447578 TRBV5-4A0A0C4DH59 114 aa3.4□□□□□ -1.87
VPS29-202ENST00000447578 A0A1W2PP18 115 aa3.4□□□□□ -1.87
VPS29-202ENST00000447578 DHRS12A0PJE2 317 aa3.4□□□□□ -1.87
VPS29-202ENST00000447578 MEIOCA2RUB1 952 aa3.4□□□□□ -1.87
VPS29-202ENST00000447578 HELTA6NFD8 242 aa3.4□□□□□ -1.87
VPS29-202ENST00000447578 CCDC160A6NGH7 325 aa3.4□□□□□ -1.87
VPS29-202ENST00000447578 A8MX80 341 aa3.4□□□□□ -1.87
VPS29-202ENST00000447578 PRMT5O14744 637 aaPredicted RBP3.4□□□□□ -1.87
VPS29-202ENST00000447578 RAD51BO15315 384 aa3.4□□□□□ -1.87
VPS29-202ENST00000447578 ZNF749O43361 778 aa3.4□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms