RNA–Protein interactions for RNA: ENST00000441114.5

SHH-204, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 888 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-204ENST00000441114 FARS2O95363 451 aaKnown RBP16.24■□□□□ 0.19
SHH-204ENST00000441114 GASTP01350 101 aa16.24■□□□□ 0.19
SHH-204ENST00000441114 CECR9P0C854 216 aa16.24■□□□□ 0.19
SHH-204ENST00000441114 NR2C1P13056 603 aa16.24■□□□□ 0.19
SHH-204ENST00000441114 PAX7P23759 505 aa16.24■□□□□ 0.19
SHH-204ENST00000441114 GSSP48637 474 aa16.24■□□□□ 0.19
SHH-204ENST00000441114 PTDSS1P48651 473 aaKnown RBP16.24■□□□□ 0.19
SHH-204ENST00000441114 RAB1AP62820 205 aa16.24■□□□□ 0.19
SHH-204ENST00000441114 TSPAN31Q12999 210 aa16.24■□□□□ 0.19
SHH-204ENST00000441114 KRR1Q13601 381 aaKnown RBP16.24■□□□□ 0.19
SHH-204ENST00000441114 SGCAQ16586 387 aa16.24■□□□□ 0.19
SHH-204ENST00000441114 GSG1Q2KHT4 349 aa16.24■□□□□ 0.19
SHH-204ENST00000441114 RFX4Q33E94 735 aa16.24■□□□□ 0.19
SHH-204ENST00000441114 MESTQ5EB52 335 aa16.24■□□□□ 0.19
SHH-204ENST00000441114 THEM4Q5T1C6 240 aa16.24■□□□□ 0.19
SHH-204ENST00000441114 SLC25A47Q6Q0C1 308 aa16.24■□□□□ 0.19
SHH-204ENST00000441114 B3GLCTQ6Y288 498 aa16.24■□□□□ 0.19
SHH-204ENST00000441114 DPY19L2P2Q6ZN68 376 aa16.24■□□□□ 0.19
SHH-204ENST00000441114 FAM122BQ7Z309 247 aa16.24■□□□□ 0.19
SHH-204ENST00000441114 MYPOPQ86VE0 399 aaPredicted RBP16.24■□□□□ 0.19
SHH-204ENST00000441114 LRRC18Q8N456 261 aa16.24■□□□□ 0.19
SHH-204ENST00000441114 LINC00471Q8N535 108 aa16.24■□□□□ 0.19
SHH-204ENST00000441114 AQP11Q8NBQ7 271 aa16.24■□□□□ 0.19
SHH-204ENST00000441114 FGFBP3Q8TAT2 258 aa16.24■□□□□ 0.19
SHH-204ENST00000441114 SMAP2Q8WU79 429 aaPredicted RBP16.24■□□□□ 0.19
SHH-204ENST00000441114 ERMAPQ96PL5 475 aaPredicted RBP16.24■□□□□ 0.19
SHH-204ENST00000441114 RNF121Q9H920 327 aa16.24■□□□□ 0.19
SHH-204ENST00000441114 NRIP3Q9NQ35 241 aa16.24■□□□□ 0.19
SHH-204ENST00000441114 B3GNT2Q9NY97 397 aa16.24■□□□□ 0.19
SHH-204ENST00000441114 ZNF224Q9NZL3 707 aa16.24■□□□□ 0.19
SHH-204ENST00000441114 CRNNQ9UBG3 495 aaPredicted RBP16.24■□□□□ 0.19
SHH-204ENST00000441114 LAMP3Q9UQV4 416 aa16.24■□□□□ 0.19
SHH-204ENST00000441114 CSMD2Q7Z408 3487 aa16.23■□□□□ 0.19
SHH-204ENST00000441114 A0A1W2PPL8 197 aa16.23■□□□□ 0.19
SHH-204ENST00000441114 E7EQL1 145 aa16.23■□□□□ 0.19
SHH-204ENST00000441114 FKBP6O75344 327 aa16.23■□□□□ 0.19
SHH-204ENST00000441114 CRYAAP02489 173 aa16.23■□□□□ 0.19
SHH-204ENST00000441114 SLC6A6P31641 620 aa16.23■□□□□ 0.19
SHH-204ENST00000441114 ARR3P36575 388 aa16.23■□□□□ 0.19
SHH-204ENST00000441114 GIPRP48546 466 aa16.23■□□□□ 0.19
SHH-204ENST00000441114 RPS6KA3P51812 740 aa16.23■□□□□ 0.19
SHH-204ENST00000441114 MICAQ29983 383 aa16.23■□□□□ 0.19
SHH-204ENST00000441114 C10orf128Q5T292 105 aa16.23■□□□□ 0.19
SHH-204ENST00000441114 C1orf146Q5VVC0 180 aa16.23■□□□□ 0.19
SHH-204ENST00000441114 TMEM171Q8WVE6 324 aa16.23■□□□□ 0.19
SHH-204ENST00000441114 PIGTQ969N2 578 aa16.23■□□□□ 0.19
SHH-204ENST00000441114 GTPBP3Q969Y2 492 aaKnown RBP16.23■□□□□ 0.19
SHH-204ENST00000441114 NMD3Q96D46 503 aaKnown RBP16.23■□□□□ 0.19
SHH-204ENST00000441114 GPX7Q96SL4 187 aaPredicted RBP16.23■□□□□ 0.19
SHH-204ENST00000441114 IFT27Q9BW83 186 aa16.23■□□□□ 0.19
SHH-204ENST00000441114 MMADHCQ9H3L0 296 aaPredicted RBP16.23■□□□□ 0.19
SHH-204ENST00000441114 RERGLQ9H628 205 aa16.23■□□□□ 0.19
SHH-204ENST00000441114 DENND2DQ9H6A0 471 aaPredicted RBP16.23■□□□□ 0.19
SHH-204ENST00000441114 EGLN3Q9H6Z9 239 aa16.23■□□□□ 0.19
SHH-204ENST00000441114 ROS1P08922 2347 aa16.22■□□□□ 0.19
SHH-204ENST00000441114 SMPD2O60906 423 aa16.22■□□□□ 0.19
SHH-204ENST00000441114 ENTPD5O75356 428 aa16.22■□□□□ 0.19
SHH-204ENST00000441114 UBL3O95164 117 aa16.22■□□□□ 0.19
SHH-204ENST00000441114 RAB36O95755 333 aa16.22■□□□□ 0.19
SHH-204ENST00000441114 IGKV3-15P01624 115 aa16.22■□□□□ 0.19
SHH-204ENST00000441114 IGLV1-44P01699 117 aa16.22■□□□□ 0.19
SHH-204ENST00000441114 SDHAP31040 664 aa16.22■□□□□ 0.19
SHH-204ENST00000441114 ZNF133P52736 654 aaPredicted RBP16.22■□□□□ 0.19
SHH-204ENST00000441114 NAAAQ02083 359 aa16.22■□□□□ 0.19
SHH-204ENST00000441114 GPR139Q6DWJ6 353 aa16.22■□□□□ 0.19
SHH-204ENST00000441114 SLC16A14Q7RTX9 510 aa16.22■□□□□ 0.19
SHH-204ENST00000441114 OR10G2Q8NGC3 310 aa16.22■□□□□ 0.19
SHH-204ENST00000441114 FNDC8Q8TC99 324 aa16.22■□□□□ 0.19
SHH-204ENST00000441114 SLCO4A1Q96BD0 722 aa16.22■□□□□ 0.19
SHH-204ENST00000441114 MBD6Q96DN6 1003 aa16.22■□□□□ 0.19
SHH-204ENST00000441114 MS4A3Q96HJ5 214 aa16.22■□□□□ 0.19
SHH-204ENST00000441114 FOXN4Q96NZ1 517 aa16.22■□□□□ 0.19
SHH-204ENST00000441114 YY1AP1Q9H869 796 aa16.22■□□□□ 0.19
SHH-204ENST00000441114 SMURF2Q9HAU4 748 aa16.22■□□□□ 0.19
SHH-204ENST00000441114 MOV10Q9HCE1 1003 aaKnown RBP16.22■□□□□ 0.19
SHH-204ENST00000441114 UGT2A1Q9Y4X1 527 aa16.22■□□□□ 0.19
SHH-204ENST00000441114 SLC22A23A1A5C7 686 aa16.21■□□□□ 0.19
SHH-204ENST00000441114 PRSS37A4D1T9 235 aa16.21■□□□□ 0.19
SHH-204ENST00000441114 EBAG9O00559 213 aa16.21■□□□□ 0.19
SHH-204ENST00000441114 IMPA2O14732 288 aa16.21■□□□□ 0.19
SHH-204ENST00000441114 CIB2O75838 187 aa16.21■□□□□ 0.19
SHH-204ENST00000441114 SOD3P08294 240 aa16.21■□□□□ 0.19
SHH-204ENST00000441114 CALCRP30988 508 aa16.21■□□□□ 0.19
SHH-204ENST00000441114 GUCA1AP43080 201 aaPredicted RBP16.21■□□□□ 0.19
SHH-204ENST00000441114 FABP6P51161 128 aa16.21■□□□□ 0.19
SHH-204ENST00000441114 RAB39AQ14964 217 aa16.21■□□□□ 0.19
SHH-204ENST00000441114 ETFDHQ16134 617 aa16.21■□□□□ 0.19
SHH-204ENST00000441114 PGGHGQ32M88 737 aa16.21■□□□□ 0.19
SHH-204ENST00000441114 C3orf36Q3SXR2 165 aa16.21■□□□□ 0.19
SHH-204ENST00000441114 CLEC12AQ5QGZ9 265 aa16.21■□□□□ 0.19
SHH-204ENST00000441114 ZNF770Q6IQ21 691 aaPredicted RBP16.21■□□□□ 0.19
SHH-204ENST00000441114 VHLLQ6RSH7 139 aa16.21■□□□□ 0.19
SHH-204ENST00000441114 ZNF620Q6ZNG0 422 aa16.21■□□□□ 0.19
SHH-204ENST00000441114 TMEM179BQ7Z7N9 219 aa16.21■□□□□ 0.19
SHH-204ENST00000441114 FAM169BQ8N8A8 192 aa16.21■□□□□ 0.19
SHH-204ENST00000441114 GIPC3Q8TF64 312 aa16.21■□□□□ 0.19
SHH-204ENST00000441114 FOXC2Q99958 501 aa16.21■□□□□ 0.19
SHH-204ENST00000441114 DHRS9Q9BPW9 319 aa16.21■□□□□ 0.19
SHH-204ENST00000441114 KCNN2Q9H2S1 579 aa16.21■□□□□ 0.19
SHH-204ENST00000441114 BEX4Q9NWD9 120 aaPredicted RBP16.21■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms