RNA–Protein interactions for RNA: ENST00000437607.1

PTPRF-208, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 788 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-208ENST00000437607 APEHP13798 732 aaKnown RBP10.73□□□□□ -0.69
PTPRF-208ENST00000437607 PAICSP22234 425 aaKnown RBP10.73□□□□□ -0.69
PTPRF-208ENST00000437607 PCSK6P29122 969 aa10.73□□□□□ -0.69
PTPRF-208ENST00000437607 SDHAP31040 664 aa10.73□□□□□ -0.69
PTPRF-208ENST00000437607 UGT2B10P36537 528 aa10.73□□□□□ -0.69
PTPRF-208ENST00000437607 SUCLG1P53597 346 aaKnown RBP10.73□□□□□ -0.69
PTPRF-208ENST00000437607 ERVK-25P63136 954 aa10.73□□□□□ -0.69
PTPRF-208ENST00000437607 ZP4Q12836 540 aa10.73□□□□□ -0.69
PTPRF-208ENST00000437607 SNAPC1Q16533 368 aa10.73□□□□□ -0.69
PTPRF-208ENST00000437607 FAM205BPQ63HN1 556 aa10.73□□□□□ -0.69
PTPRF-208ENST00000437607 PTCHD4Q6ZW05 846 aa10.73□□□□□ -0.69
PTPRF-208ENST00000437607 FCRLAQ7L513 359 aa10.73□□□□□ -0.69
PTPRF-208ENST00000437607 P4HA3Q7Z4N8 544 aa10.73□□□□□ -0.69
PTPRF-208ENST00000437607 TMEM99Q8N816 258 aa10.73□□□□□ -0.69
PTPRF-208ENST00000437607 CNEP1R1Q8N9A8 125 aa10.73□□□□□ -0.69
PTPRF-208ENST00000437607 PERPQ96FX8 193 aa10.73□□□□□ -0.69
PTPRF-208ENST00000437607 MUS81Q96NY9 551 aa10.73□□□□□ -0.69
PTPRF-208ENST00000437607 CCL19Q99731 98 aa10.73□□□□□ -0.69
PTPRF-208ENST00000437607 PRRG4Q9BZD6 226 aa10.73□□□□□ -0.69
PTPRF-208ENST00000437607 NRIP3Q9NQ35 241 aa10.73□□□□□ -0.69
PTPRF-208ENST00000437607 TAS2R5Q9NYW4 299 aa10.73□□□□□ -0.69
PTPRF-208ENST00000437607 GRHPRQ9UBQ7 328 aa10.73□□□□□ -0.69
PTPRF-208ENST00000437607 KLHL21Q9UJP4 597 aa10.73□□□□□ -0.69
PTPRF-208ENST00000437607 ADAM18Q9Y3Q7 739 aa10.73□□□□□ -0.69
PTPRF-208ENST00000437607 NOX1Q9Y5S8 564 aa10.73□□□□□ -0.69
PTPRF-208ENST00000437607 IER3IP1Q9Y5U9 82 aa10.73□□□□□ -0.69
PTPRF-208ENST00000437607 CADP27708 2225 aa10.72□□□□□ -0.69
PTPRF-208ENST00000437607 NPIPB13A6NJU9 1138 aa10.72□□□□□ -0.69
PTPRF-208ENST00000437607 NPIPB4C9JG80 1138 aa10.72□□□□□ -0.69
PTPRF-208ENST00000437607 INAFM1C9JVW0 142 aa10.72□□□□□ -0.69
PTPRF-208ENST00000437607 E9PQ18 207 aa10.72□□□□□ -0.69
PTPRF-208ENST00000437607 ARPC3O15145 178 aa10.72□□□□□ -0.69
PTPRF-208ENST00000437607 SMAD9O15198 467 aaKnown RBP10.72□□□□□ -0.69
PTPRF-208ENST00000437607 SURF4O15260 269 aa10.72□□□□□ -0.69
PTPRF-208ENST00000437607 IDH3BO43837 385 aa10.72□□□□□ -0.69
PTPRF-208ENST00000437607 ZNF43P17038 809 aa10.72□□□□□ -0.69
PTPRF-208ENST00000437607 SIRPAP78324 504 aa10.72□□□□□ -0.69
PTPRF-208ENST00000437607 MELKQ14680 651 aa10.72□□□□□ -0.69
PTPRF-208ENST00000437607 PDK3Q15120 406 aa10.72□□□□□ -0.69
PTPRF-208ENST00000437607 PON3Q15166 354 aa10.72□□□□□ -0.69
PTPRF-208ENST00000437607 GUSBP1Q15486 140 aa10.72□□□□□ -0.69
PTPRF-208ENST00000437607 SLC35F1Q5T1Q4 408 aa10.72□□□□□ -0.69
PTPRF-208ENST00000437607 TMEM225Q6GV28 225 aa10.72□□□□□ -0.69
PTPRF-208ENST00000437607 OR2A2Q6IF42 318 aa10.72□□□□□ -0.69
PTPRF-208ENST00000437607 ACSM5Q6NUN0 579 aa10.72□□□□□ -0.69
PTPRF-208ENST00000437607 PXKQ7Z7A4 578 aa10.72□□□□□ -0.69
PTPRF-208ENST00000437607 ADCK1Q86TW2 530 aa10.72□□□□□ -0.69
PTPRF-208ENST00000437607 ENTHD1Q8IYW4 607 aa10.72□□□□□ -0.69
PTPRF-208ENST00000437607 TCEANCQ8N8B7 351 aa10.72□□□□□ -0.69
PTPRF-208ENST00000437607 LRRC75AQ8NAA5 344 aa10.72□□□□□ -0.69
PTPRF-208ENST00000437607 OR8J1Q8NGP2 316 aa10.72□□□□□ -0.69
PTPRF-208ENST00000437607 TMEM163Q8TC26 289 aa10.72□□□□□ -0.69
PTPRF-208ENST00000437607 RASD2Q96D21 266 aa10.72□□□□□ -0.69
PTPRF-208ENST00000437607 ZNF845Q96IR2 970 aaPredicted RBP10.72□□□□□ -0.69
PTPRF-208ENST00000437607 OXGR1Q96P68 337 aa10.72□□□□□ -0.69
PTPRF-208ENST00000437607 TSPAN32Q96QS1 320 aa10.72□□□□□ -0.69
PTPRF-208ENST00000437607 MED18Q9BUE0 208 aa10.72□□□□□ -0.69
PTPRF-208ENST00000437607 TXNIPQ9H3M7 391 aa10.72□□□□□ -0.69
PTPRF-208ENST00000437607 RNF122Q9H9V4 155 aa10.72□□□□□ -0.69
PTPRF-208ENST00000437607 CMC2Q9NRP2 79 aa10.72□□□□□ -0.69
PTPRF-208ENST00000437607 ZNF226Q9NYT6 803 aa10.72□□□□□ -0.69
PTPRF-208ENST00000437607 EMC3Q9P0I2 261 aa10.72□□□□□ -0.69
PTPRF-208ENST00000437607 KLHL13Q9P2N7 655 aa10.72□□□□□ -0.69
PTPRF-208ENST00000437607 STAB1Q9NY15 2570 aa10.72□□□□□ -0.69
PTPRF-208ENST00000437607 A6NIZ1 184 aa10.71□□□□□ -0.69
PTPRF-208ENST00000437607 ZNF814B7Z6K7 855 aa10.71□□□□□ -0.69
PTPRF-208ENST00000437607 IMPA2O14732 288 aa10.71□□□□□ -0.69
PTPRF-208ENST00000437607 TRAF3IP2O43734 574 aaPredicted RBP10.71□□□□□ -0.69
PTPRF-208ENST00000437607 PRKYO43930 277 aa10.71□□□□□ -0.69
PTPRF-208ENST00000437607 TXNDC12O95881 172 aa10.71□□□□□ -0.69
PTPRF-208ENST00000437607 BCL10O95999 233 aa10.71□□□□□ -0.69
PTPRF-208ENST00000437607 THBDP07204 575 aa10.71□□□□□ -0.69
PTPRF-208ENST00000437607 IFNGR1P15260 489 aa10.71□□□□□ -0.69
PTPRF-208ENST00000437607 P2RY4P51582 365 aa10.71□□□□□ -0.69
PTPRF-208ENST00000437607 RAP1BP61224 184 aa10.71□□□□□ -0.69
PTPRF-208ENST00000437607 RPL27P61353 136 aaKnown RBP10.71□□□□□ -0.69
PTPRF-208ENST00000437607 RAP1AP62834 184 aa10.71□□□□□ -0.69
PTPRF-208ENST00000437607 TEKQ02763 1124 aa10.71□□□□□ -0.69
PTPRF-208ENST00000437607 KHDRBS1Q07666 443 aaKnown RBP eCLIP10.71□□□□□ -0.69
PTPRF-208ENST00000437607 CD47Q08722 323 aa10.71□□□□□ -0.69
PTPRF-208ENST00000437607 MAD2L1BPQ15013 274 aaPredicted RBP10.71□□□□□ -0.69
PTPRF-208ENST00000437607 SLC35D2Q76EJ3 337 aa10.71□□□□□ -0.69
PTPRF-208ENST00000437607 CXXC5Q7LFL8 322 aaKnown RBP10.71□□□□□ -0.69
PTPRF-208ENST00000437607 FAM122BQ7Z309 247 aa10.71□□□□□ -0.69
PTPRF-208ENST00000437607 GID4Q8IVV7 300 aa10.71□□□□□ -0.69
PTPRF-208ENST00000437607 CCDC103Q8IW40 242 aa10.71□□□□□ -0.69
PTPRF-208ENST00000437607 ZNF610Q8N9Z0 462 aa10.71□□□□□ -0.69
PTPRF-208ENST00000437607 SDR9C7Q8NEX9 313 aa10.71□□□□□ -0.69
PTPRF-208ENST00000437607 OR9K2Q8NGE7 335 aa10.71□□□□□ -0.69
PTPRF-208ENST00000437607 CNIH3Q8TBE1 160 aa10.71□□□□□ -0.69
PTPRF-208ENST00000437607 RNF128Q8TEB7 428 aa10.71□□□□□ -0.69
PTPRF-208ENST00000437607 OTULINQ96BN8 352 aa10.71□□□□□ -0.69
PTPRF-208ENST00000437607 ZC3HAV1LQ96H79 300 aaKnown RBP10.71□□□□□ -0.69
PTPRF-208ENST00000437607 Q96M85 177 aa10.71□□□□□ -0.69
PTPRF-208ENST00000437607 IL4I1Q96RQ9 567 aa10.71□□□□□ -0.69
PTPRF-208ENST00000437607 SF3B5Q9BWJ5 86 aaKnown RBP10.71□□□□□ -0.69
PTPRF-208ENST00000437607 FN3KQ9H479 309 aa10.71□□□□□ -0.69
PTPRF-208ENST00000437607 FANCFQ9NPI8 374 aa10.71□□□□□ -0.69
PTPRF-208ENST00000437607 CLN6Q9NWW5 311 aa10.71□□□□□ -0.69
PTPRF-208ENST00000437607 ELOVL5Q9NYP7 299 aa10.71□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 61.4 ms