RNA–Protein interactions for RNA: ENST00000433762.1

COL6A3-207, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best)

Gene COL6A3, Length 2,379 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-207ENST00000433762 WDR38Q5JTN6 314 aa12.35□□□□□ -0.43
COL6A3-207ENST00000433762 COMMD7Q86VX2 200 aa12.35□□□□□ -0.43
COL6A3-207ENST00000433762 PTX4Q96A99 478 aa12.35□□□□□ -0.43
COL6A3-207ENST00000433762 LMF1Q96S06 567 aa12.35□□□□□ -0.43
COL6A3-207ENST00000433762 SLC38A3Q99624 504 aa12.35□□□□□ -0.43
COL6A3-207ENST00000433762 SMAD5Q99717 465 aaKnown RBP12.35□□□□□ -0.43
COL6A3-207ENST00000433762 SEC22CQ9BRL7 303 aa12.35□□□□□ -0.43
COL6A3-207ENST00000433762 SYT4Q9H2B2 425 aa12.35□□□□□ -0.43
COL6A3-207ENST00000433762 UPB1Q9UBR1 384 aa12.35□□□□□ -0.43
COL6A3-207ENST00000433762 B9D1Q9UPM9 204 aa12.35□□□□□ -0.43
COL6A3-207ENST00000433762 TMEM184BQ9Y519 407 aaPredicted RBP12.35□□□□□ -0.43
COL6A3-207ENST00000433762 TDRD6O60522 2096 aaKnown RBP12.35□□□□□ -0.43
COL6A3-207ENST00000433762 LOC105378220A0A1B0GUY1 285 aaPredicted RBP12.34□□□□□ -0.43
COL6A3-207ENST00000433762 TVP23AA6NH52 213 aa12.34□□□□□ -0.43
COL6A3-207ENST00000433762 NPIPB13A6NJU9 1138 aa12.34□□□□□ -0.43
COL6A3-207ENST00000433762 NPIPB4C9JG80 1138 aa12.34□□□□□ -0.43
COL6A3-207ENST00000433762 MCRIP1C9JLW8 97 aa12.34□□□□□ -0.43
COL6A3-207ENST00000433762 H3BMH7 237 aa12.34□□□□□ -0.43
COL6A3-207ENST00000433762 GP1BBP13224 206 aa12.34□□□□□ -0.43
COL6A3-207ENST00000433762 IL12BP29460 328 aa12.34□□□□□ -0.43
COL6A3-207ENST00000433762 POLR2HP52434 150 aaKnown RBP12.34□□□□□ -0.43
COL6A3-207ENST00000433762 RPS15P62841 145 aaKnown RBP12.34□□□□□ -0.43
COL6A3-207ENST00000433762 SRSF5Q13243 272 aaKnown RBP12.34□□□□□ -0.43
COL6A3-207ENST00000433762 AANATQ16613 207 aa12.34□□□□□ -0.43
COL6A3-207ENST00000433762 PCGF3Q3KNV8 242 aa12.34□□□□□ -0.43
COL6A3-207ENST00000433762 STPG1Q5TH74 334 aa12.34□□□□□ -0.43
COL6A3-207ENST00000433762 C3P1Q6ZMU1 363 aa12.34□□□□□ -0.43
COL6A3-207ENST00000433762 OR4C16Q8NGL9 310 aa12.34□□□□□ -0.43
COL6A3-207ENST00000433762 LRRC20Q8TCA0 184 aa12.34□□□□□ -0.43
COL6A3-207ENST00000433762 METTL21AQ8WXB1 218 aa12.34□□□□□ -0.43
COL6A3-207ENST00000433762 EDAQ92838 391 aa12.34□□□□□ -0.43
COL6A3-207ENST00000433762 GCDHQ92947 438 aaPredicted RBP12.34□□□□□ -0.43
COL6A3-207ENST00000433762 ZDHHC12Q96GR4 267 aa12.34□□□□□ -0.43
COL6A3-207ENST00000433762 GAS2L1Q99501 681 aaPredicted RBP12.34□□□□□ -0.43
COL6A3-207ENST00000433762 CUTCQ9NTM9 273 aa12.34□□□□□ -0.43
COL6A3-207ENST00000433762 A0A1W2PPL8 197 aa12.34□□□□□ -0.43
COL6A3-207ENST00000433762 TCRBV16S1A1N1A0A5B0 115 aa12.34□□□□□ -0.43
COL6A3-207ENST00000433762 L7N2F9 121 aa12.34□□□□□ -0.43
COL6A3-207ENST00000433762 SLC25A12O75746 678 aa12.34□□□□□ -0.43
COL6A3-207ENST00000433762 CD2P06729 351 aa12.34□□□□□ -0.43
COL6A3-207ENST00000433762 MAGEB1P43366 347 aa12.34□□□□□ -0.43
COL6A3-207ENST00000433762 EBPQ15125 230 aaKnown RBP12.34□□□□□ -0.43
COL6A3-207ENST00000433762 GLT8D1Q68CQ7 371 aa12.34□□□□□ -0.43
COL6A3-207ENST00000433762 GPX8Q8TED1 209 aa12.34□□□□□ -0.43
COL6A3-207ENST00000433762 DAZLQ92904 295 aaKnown RBP12.34□□□□□ -0.43
COL6A3-207ENST00000433762 PTDSS2Q9BVG9 487 aa12.34□□□□□ -0.43
COL6A3-207ENST00000433762 PCED1AQ9H1Q7 454 aa12.34□□□□□ -0.43
COL6A3-207ENST00000433762 C1orf198Q9H425 327 aa12.34□□□□□ -0.43
COL6A3-207ENST00000433762 SOHLH2Q9NX45 425 aa12.34□□□□□ -0.43
COL6A3-207ENST00000433762 ING1Q9UK53 422 aaPredicted RBP12.34□□□□□ -0.43
COL6A3-207ENST00000433762 CYP8B1Q9UNU6 501 aa12.34□□□□□ -0.43
COL6A3-207ENST00000433762 IGLV1-36A0A0B4J1U3 117 aa12.33□□□□□ -0.44
COL6A3-207ENST00000433762 ICOSLGO75144 302 aa12.33□□□□□ -0.44
COL6A3-207ENST00000433762 ZNF217O75362 1048 aa12.33□□□□□ -0.44
COL6A3-207ENST00000433762 MAS1P04201 325 aa12.33□□□□□ -0.44
COL6A3-207ENST00000433762 CRABP1P29762 137 aa12.33□□□□□ -0.44
COL6A3-207ENST00000433762 SSTR2P30874 369 aa12.33□□□□□ -0.44
COL6A3-207ENST00000433762 PRSS3P35030 304 aa12.33□□□□□ -0.44
COL6A3-207ENST00000433762 POU3F4P49335 361 aa12.33□□□□□ -0.44
COL6A3-207ENST00000433762 YOD1Q5VVQ6 348 aaPredicted RBP12.33□□□□□ -0.44
COL6A3-207ENST00000433762 OGFOD3Q6PK18 319 aa12.33□□□□□ -0.44
COL6A3-207ENST00000433762 MISPQ8IVT2 679 aa12.33□□□□□ -0.44
COL6A3-207ENST00000433762 PM20D2Q8IYS1 436 aa12.33□□□□□ -0.44
COL6A3-207ENST00000433762 CCDC107Q8WV48 283 aa12.33□□□□□ -0.44
COL6A3-207ENST00000433762 TSEN15Q8WW01 171 aaKnown RBP12.33□□□□□ -0.44
COL6A3-207ENST00000433762 FAM3DQ96BQ1 224 aa12.33□□□□□ -0.44
COL6A3-207ENST00000433762 GPR174Q9BXC1 333 aa12.33□□□□□ -0.44
COL6A3-207ENST00000433762 ELOVL3Q9HB03 270 aa12.33□□□□□ -0.44
COL6A3-207ENST00000433762 BEX1Q9HBH7 125 aa12.33□□□□□ -0.44
COL6A3-207ENST00000433762 PNO1Q9NRX1 252 aaKnown RBP12.33□□□□□ -0.44
COL6A3-207ENST00000433762 CKLFQ9UBR5 152 aa12.33□□□□□ -0.44
COL6A3-207ENST00000433762 OPN4Q9UHM6 478 aa12.33□□□□□ -0.44
COL6A3-207ENST00000433762 C4orf47A7E2U8 309 aa12.33□□□□□ -0.44
COL6A3-207ENST00000433762 A8MVM7 634 aa12.33□□□□□ -0.44
COL6A3-207ENST00000433762 PYCARD-AS1I3L0S3 204 aa12.33□□□□□ -0.44
COL6A3-207ENST00000433762 HCRTR2O43614 444 aa12.33□□□□□ -0.44
COL6A3-207ENST00000433762 OR2T1O43869 369 aa12.33□□□□□ -0.44
COL6A3-207ENST00000433762 GABRA1P14867 456 aa12.33□□□□□ -0.44
COL6A3-207ENST00000433762 IGFBP3P17936 291 aaPredicted RBP12.33□□□□□ -0.44
COL6A3-207ENST00000433762 ANXA7P20073 488 aaKnown RBP12.33□□□□□ -0.44
COL6A3-207ENST00000433762 SEC61A1P61619 476 aaKnown RBP12.33□□□□□ -0.44
COL6A3-207ENST00000433762 DLX2Q07687 328 aaPredicted RBP12.33□□□□□ -0.44
COL6A3-207ENST00000433762 POU4F3Q15319 338 aa12.33□□□□□ -0.44
COL6A3-207ENST00000433762 CATSPERDQ86XM0 798 aa12.33□□□□□ -0.44
COL6A3-207ENST00000433762 TMEM229BQ8NBD8 167 aa12.33□□□□□ -0.44
COL6A3-207ENST00000433762 CLEC1AQ8NC01 280 aa12.33□□□□□ -0.44
COL6A3-207ENST00000433762 CEP76Q8TAP6 659 aa12.33□□□□□ -0.44
COL6A3-207ENST00000433762 C8orf44Q96CB5 159 aa12.33□□□□□ -0.44
COL6A3-207ENST00000433762 ELMOD3Q96FG2 381 aa12.33□□□□□ -0.44
COL6A3-207ENST00000433762 ADOQ96SZ5 270 aa12.33□□□□□ -0.44
COL6A3-207ENST00000433762 SLC25A21Q9BQT8 299 aaPredicted RBP12.33□□□□□ -0.44
COL6A3-207ENST00000433762 GINS4Q9BRT9 223 aa12.33□□□□□ -0.44
COL6A3-207ENST00000433762 POTEKPQ9BYX7 375 aa12.33□□□□□ -0.44
COL6A3-207ENST00000433762 CA10Q9NS85 328 aa12.33□□□□□ -0.44
COL6A3-207ENST00000433762 KCNG2Q9UJ96 466 aa12.33□□□□□ -0.44
COL6A3-207ENST00000433762 SHISA7A6NL88 538 aa12.32□□□□□ -0.44
COL6A3-207ENST00000433762 NUDT21O43809 227 aaKnown RBP12.32□□□□□ -0.44
COL6A3-207ENST00000433762 ISG15P05161 165 aa12.32□□□□□ -0.44
COL6A3-207ENST00000433762 CXCL2P19875 107 aa12.32□□□□□ -0.44
COL6A3-207ENST00000433762 RIDAP52758 137 aaKnown RBP12.32□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 53.1 ms