RNA–Protein interactions for RNA: ENST00000429035.1

SDC1-204, Transcript of syndecan 1, humanhuman

TSL 3

Gene SDC1, Length 646 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-204ENST00000429035 SYT14Q8NB59 555 aa12.42□□□□□ -0.42
SDC1-204ENST00000429035 PFN4Q8NHR9 129 aa12.42□□□□□ -0.42
SDC1-204ENST00000429035 SYNPRQ8TBG9 265 aa12.42□□□□□ -0.42
SDC1-204ENST00000429035 GTF3AQ92664 365 aaKnown RBP12.42□□□□□ -0.42
SDC1-204ENST00000429035 TAMM41Q96BW9 452 aa12.42□□□□□ -0.42
SDC1-204ENST00000429035 ATP6V1G3Q96LB4 118 aa12.42□□□□□ -0.42
SDC1-204ENST00000429035 LRMDAQ9H2I8 198 aa12.42□□□□□ -0.42
SDC1-204ENST00000429035 ZNF385DQ9H6B1 395 aa12.42□□□□□ -0.42
SDC1-204ENST00000429035 HINT3Q9NQE9 182 aaKnown RBP12.42□□□□□ -0.42
SDC1-204ENST00000429035 DYSFO75923 2080 aa12.41□□□□□ -0.42
SDC1-204ENST00000429035 C17orf100A8MU93 164 aa12.41□□□□□ -0.42
SDC1-204ENST00000429035 SHOX2O60902 331 aaPredicted RBP12.41□□□□□ -0.42
SDC1-204ENST00000429035 VENTXO95231 258 aa12.41□□□□□ -0.42
SDC1-204ENST00000429035 LYPD3O95274 346 aa12.41□□□□□ -0.42
SDC1-204ENST00000429035 TNFRSF1BP20333 461 aa12.41□□□□□ -0.42
SDC1-204ENST00000429035 TAS2R41P59536 307 aa12.41□□□□□ -0.42
SDC1-204ENST00000429035 RPL18Q07020 188 aaKnown RBP12.41□□□□□ -0.42
SDC1-204ENST00000429035 CD47Q08722 323 aa12.41□□□□□ -0.42
SDC1-204ENST00000429035 TOP3AQ13472 1001 aaPredicted RBP12.41□□□□□ -0.42
SDC1-204ENST00000429035 TSTQ16762 297 aaKnown RBP12.41□□□□□ -0.42
SDC1-204ENST00000429035 TTMPQ5BVD1 217 aa12.41□□□□□ -0.42
SDC1-204ENST00000429035 FAHD2BQ6P2I3 314 aaPredicted RBP12.41□□□□□ -0.42
SDC1-204ENST00000429035 LRFN4Q6PJG9 635 aa12.41□□□□□ -0.42
SDC1-204ENST00000429035 LINC00114Q6XXX2 140 aa12.41□□□□□ -0.42
SDC1-204ENST00000429035 OR1J2Q8NGS2 313 aa12.41□□□□□ -0.42
SDC1-204ENST00000429035 C11orf40Q8WZ69 217 aa12.41□□□□□ -0.42
SDC1-204ENST00000429035 MCHR2Q969V1 340 aa12.41□□□□□ -0.42
SDC1-204ENST00000429035 FAHD2AQ96GK7 314 aa12.41□□□□□ -0.42
SDC1-204ENST00000429035 MPP4Q96JB8 637 aa12.41□□□□□ -0.42
SDC1-204ENST00000429035 KCNN2Q9H2S1 579 aa12.41□□□□□ -0.42
SDC1-204ENST00000429035 C1orf198Q9H425 327 aa12.41□□□□□ -0.42
SDC1-204ENST00000429035 NPHS2Q9NP85 383 aa12.41□□□□□ -0.42
SDC1-204ENST00000429035 CCNB1IP1Q9NPC3 277 aa12.41□□□□□ -0.42
SDC1-204ENST00000429035 INTS9Q9NV88 658 aaKnown RBP12.41□□□□□ -0.42
SDC1-204ENST00000429035 TRIM33Q9UPN9 1127 aa12.41□□□□□ -0.42
SDC1-204ENST00000429035 TRMUO75648 421 aaKnown RBP12.4□□□□□ -0.42
SDC1-204ENST00000429035 RP2O75695 350 aa12.4□□□□□ -0.42
SDC1-204ENST00000429035 OR7A10O76100 309 aa12.4□□□□□ -0.42
SDC1-204ENST00000429035 SLC2A10O95528 541 aa12.4□□□□□ -0.42
SDC1-204ENST00000429035 PTHP01270 115 aa12.4□□□□□ -0.42
SDC1-204ENST00000429035 MT-ND5P03915 603 aa12.4□□□□□ -0.42
SDC1-204ENST00000429035 ASAH2BP0C7U1 165 aa12.4□□□□□ -0.42
SDC1-204ENST00000429035 DAP3P51398 398 aaKnown RBP12.4□□□□□ -0.42
SDC1-204ENST00000429035 UGT2B15P54855 530 aa12.4□□□□□ -0.42
SDC1-204ENST00000429035 TMEM33P57088 247 aa12.4□□□□□ -0.42
SDC1-204ENST00000429035 RUNX1T1Q06455 604 aa12.4□□□□□ -0.42
SDC1-204ENST00000429035 SCGB2A2Q13296 93 aa12.4□□□□□ -0.42
SDC1-204ENST00000429035 SPATA46Q5T0L3 261 aa12.4□□□□□ -0.42
SDC1-204ENST00000429035 USP51Q70EK9 711 aa12.4□□□□□ -0.42
SDC1-204ENST00000429035 HDDC2Q7Z4H3 204 aa12.4□□□□□ -0.42
SDC1-204ENST00000429035 DPPA2Q7Z7J5 298 aa12.4□□□□□ -0.42
SDC1-204ENST00000429035 DPP10Q8N608 796 aa12.4□□□□□ -0.42
SDC1-204ENST00000429035 OR1J1Q8NGS3 322 aa12.4□□□□□ -0.42
SDC1-204ENST00000429035 ZNF418Q8TF45 676 aaPredicted RBP12.4□□□□□ -0.42
SDC1-204ENST00000429035 ASB10Q8WXI3 467 aa12.4□□□□□ -0.42
SDC1-204ENST00000429035 NSMAFQ92636 917 aa12.4□□□□□ -0.42
SDC1-204ENST00000429035 RAB39BQ96DA2 213 aa12.4□□□□□ -0.42
SDC1-204ENST00000429035 SGTBQ96EQ0 304 aa12.4□□□□□ -0.42
SDC1-204ENST00000429035 BCL2L14Q9BZR8 327 aa12.4□□□□□ -0.42
SDC1-204ENST00000429035 SLC19A3Q9BZV2 496 aa12.4□□□□□ -0.42
SDC1-204ENST00000429035 ZNF665Q9H7R5 613 aa12.4□□□□□ -0.42
SDC1-204ENST00000429035 KAT8Q9H7Z6 458 aaKnown RBP12.4□□□□□ -0.42
SDC1-204ENST00000429035 SAP30LQ9HAJ7 183 aa12.4□□□□□ -0.42
SDC1-204ENST00000429035 INIPQ9NRY2 104 aa12.4□□□□□ -0.42
SDC1-204ENST00000429035 DECR2Q9NUI1 292 aa12.4□□□□□ -0.42
SDC1-204ENST00000429035 SLCO1C1Q9NYB5 712 aa12.4□□□□□ -0.42
SDC1-204ENST00000429035 SH3GLB1Q9Y371 365 aa12.4□□□□□ -0.42
SDC1-204ENST00000429035 TANC2Q9HCD6 1990 aa12.39□□□□□ -0.43
SDC1-204ENST00000429035 LOC105371242A0A075B767 164 aa12.39□□□□□ -0.43
SDC1-204ENST00000429035 IGHV1-69-2A0A0G2JMI3 117 aa12.39□□□□□ -0.43
SDC1-204ENST00000429035 A0A0G2JND7 137 aa12.39□□□□□ -0.43
SDC1-204ENST00000429035 CLDN25C9JDP6 229 aa12.39□□□□□ -0.43
SDC1-204ENST00000429035 MPZL1O95297 269 aa12.39□□□□□ -0.43
SDC1-204ENST00000429035 PNPP00491 289 aa12.39□□□□□ -0.43
SDC1-204ENST00000429035 EPHA1P21709 976 aa12.39□□□□□ -0.43
SDC1-204ENST00000429035 CDAP32320 146 aa12.39□□□□□ -0.43
SDC1-204ENST00000429035 AQP2P41181 271 aa12.39□□□□□ -0.43
SDC1-204ENST00000429035 RAD52P43351 418 aa12.39□□□□□ -0.43
SDC1-204ENST00000429035 TEKQ02763 1124 aa12.39□□□□□ -0.43
SDC1-204ENST00000429035 VMACQ2NL98 169 aa12.39□□□□□ -0.43
SDC1-204ENST00000429035 PCGF3Q3KNV8 242 aa12.39□□□□□ -0.43
SDC1-204ENST00000429035 NKAIN4Q8IVV8 208 aa12.39□□□□□ -0.43
SDC1-204ENST00000429035 SEMA6DQ8NFY4 1073 aa12.39□□□□□ -0.43
SDC1-204ENST00000429035 ZNF519Q8TB69 540 aa12.39□□□□□ -0.43
SDC1-204ENST00000429035 TMEM255BQ8WV15 326 aa12.39□□□□□ -0.43
SDC1-204ENST00000429035 RASSF5Q8WWW0 418 aa12.39□□□□□ -0.43
SDC1-204ENST00000429035 PRSS27Q9BQR3 290 aa12.39□□□□□ -0.43
SDC1-204ENST00000429035 RACGAP1Q9H0H5 632 aa12.39□□□□□ -0.43
SDC1-204ENST00000429035 MEPEQ9NQ76 525 aaPredicted RBP12.39□□□□□ -0.43
SDC1-204ENST00000429035 IGLV3-9A0A075B6K5 115 aa12.38□□□□□ -0.43
SDC1-204ENST00000429035 TRAV20A0A0B4J274 112 aa12.38□□□□□ -0.43
SDC1-204ENST00000429035 ISPDA4D126 451 aa12.38□□□□□ -0.43
SDC1-204ENST00000429035 SPRY3O43610 288 aa12.38□□□□□ -0.43
SDC1-204ENST00000429035 SNAP29O95721 258 aa12.38□□□□□ -0.43
SDC1-204ENST00000429035 MT-ND1P03886 318 aa12.38□□□□□ -0.43
SDC1-204ENST00000429035 ZNF250P15622 560 aa12.38□□□□□ -0.43
SDC1-204ENST00000429035 ACADSP16219 412 aa12.38□□□□□ -0.43
SDC1-204ENST00000429035 FUT1P19526 365 aa12.38□□□□□ -0.43
SDC1-204ENST00000429035 GCH1P30793 250 aa12.38□□□□□ -0.43
SDC1-204ENST00000429035 UCP2P55851 309 aa12.38□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms