RNA–Protein interactions for RNA: ENST00000425048.1

LINC01040-201, Transcript of long intergenic non-protein coding RNA 1040, humanhuman

TSL 2 BASIC

Gene LINC01040, Length 666 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01040-201ENST00000425048 TDRD3Q9H7E2 651 aaKnown RBP2.47□□□□□ -2.01
LINC01040-201ENST00000425048 NIPAL2Q9H841 368 aa2.47□□□□□ -2.01
LINC01040-201ENST00000425048 COQ10BQ9H8M1 238 aa2.47□□□□□ -2.01
LINC01040-201ENST00000425048 GORASP2Q9H8Y8 452 aa2.47□□□□□ -2.01
LINC01040-201ENST00000425048 LRRC40Q9H9A6 602 aa2.47□□□□□ -2.01
LINC01040-201ENST00000425048 TM9SF3Q9HD45 589 aa2.47□□□□□ -2.01
LINC01040-201ENST00000425048 NRBP2Q9NSY0 501 aa2.47□□□□□ -2.01
LINC01040-201ENST00000425048 UFSP2Q9NUQ7 469 aa2.47□□□□□ -2.01
LINC01040-201ENST00000425048 PAK1IP1Q9NWT1 392 aaPredicted RBP2.47□□□□□ -2.01
LINC01040-201ENST00000425048 BABAM2Q9NXR7 383 aa2.47□□□□□ -2.01
LINC01040-201ENST00000425048 BFARQ9NZS9 450 aa2.47□□□□□ -2.01
LINC01040-201ENST00000425048 GLS2Q9UI32 602 aa2.47□□□□□ -2.01
LINC01040-201ENST00000425048 CYTH4Q9UIA0 394 aa2.47□□□□□ -2.01
LINC01040-201ENST00000425048 PSG11Q9UQ72 335 aa2.47□□□□□ -2.01
LINC01040-201ENST00000425048 DHRS7Q9Y394 339 aa2.47□□□□□ -2.01
LINC01040-201ENST00000425048 ATG4BQ9Y4P1 393 aa2.47□□□□□ -2.01
LINC01040-201ENST00000425048 EDC4Q6P2E9 1401 aaKnown RBP2.47□□□□□ -2.01
LINC01040-201ENST00000425048 C10orf71Q711Q0 1435 aa2.47□□□□□ -2.01
LINC01040-201ENST00000425048 PRG4Q92954 1404 aaPredicted RBP2.47□□□□□ -2.01
LINC01040-201ENST00000425048 NUP188Q5SRE5 1749 aa2.47□□□□□ -2.01
LINC01040-201ENST00000425048 TIAM2Q8IVF5 1701 aa2.47□□□□□ -2.01
LINC01040-201ENST00000425048 ANKRD31Q8N7Z5 1873 aa2.47□□□□□ -2.01
LINC01040-201ENST00000425048 NID2Q14112 1375 aa2.47□□□□□ -2.01
LINC01040-201ENST00000425048 C5P01031 1676 aa2.47□□□□□ -2.01
LINC01040-201ENST00000425048 SCN7AQ01118 1682 aa2.47□□□□□ -2.01
LINC01040-201ENST00000425048 FOCADQ5VW36 1801 aa2.47□□□□□ -2.01
LINC01040-201ENST00000425048 SLX4Q8IY92 1834 aa2.47□□□□□ -2.01
LINC01040-201ENST00000425048 NFASCO94856 1347 aa2.46□□□□□ -2.02
LINC01040-201ENST00000425048 DIP2BQ9P265 1576 aa2.46□□□□□ -2.02
LINC01040-201ENST00000425048 ATRNO75882 1429 aa2.46□□□□□ -2.02
LINC01040-201ENST00000425048 GSTTP1A0A1W2PQM5 241 aa2.46□□□□□ -2.02
LINC01040-201ENST00000425048 KRT87PA6NCN2 255 aa2.46□□□□□ -2.02
LINC01040-201ENST00000425048 SAGE2PA6NJ88 616 aa2.46□□□□□ -2.02
LINC01040-201ENST00000425048 PDZK1P1A8MUH7 402 aa2.46□□□□□ -2.02
LINC01040-201ENST00000425048 KBTBD13C9JR72 458 aa2.46□□□□□ -2.02
LINC01040-201ENST00000425048 UBXN8O00124 270 aa2.46□□□□□ -2.02
LINC01040-201ENST00000425048 SGK1O00141 431 aa2.46□□□□□ -2.02
LINC01040-201ENST00000425048 WWP2O00308 870 aa2.46□□□□□ -2.02
LINC01040-201ENST00000425048 SPOPO43791 374 aa2.46□□□□□ -2.02
LINC01040-201ENST00000425048 TSPAN2O60636 221 aa2.46□□□□□ -2.02
LINC01040-201ENST00000425048 HUS1O60921 280 aa2.46□□□□□ -2.02
LINC01040-201ENST00000425048 NOL3O60936 208 aaKnown RBP2.46□□□□□ -2.02
LINC01040-201ENST00000425048 LYPLA1O75608 230 aaPredicted RBP2.46□□□□□ -2.02
LINC01040-201ENST00000425048 UGT2B17O75795 530 aa2.46□□□□□ -2.02
LINC01040-201ENST00000425048 CBR3O75828 277 aa2.46□□□□□ -2.02
LINC01040-201ENST00000425048 PTBP3O95758 552 aaKnown RBP2.46□□□□□ -2.02
LINC01040-201ENST00000425048 TSPAN12O95859 305 aa2.46□□□□□ -2.02
LINC01040-201ENST00000425048 CCNE2O96020 404 aa2.46□□□□□ -2.02
LINC01040-201ENST00000425048 C1QBP02746 253 aa2.46□□□□□ -2.02
LINC01040-201ENST00000425048 FCER2P06734 321 aa2.46□□□□□ -2.02
LINC01040-201ENST00000425048 RRASP10301 218 aa2.46□□□□□ -2.02
LINC01040-201ENST00000425048 HSPD1P10809 573 aaKnown RBP2.46□□□□□ -2.02
LINC01040-201ENST00000425048 XRCC1P18887 633 aaPredicted RBP2.46□□□□□ -2.02
LINC01040-201ENST00000425048 S100PP25815 95 aa2.46□□□□□ -2.02
LINC01040-201ENST00000425048 RBMXP38159 391 aaKnown RBP2.46□□□□□ -2.02
LINC01040-201ENST00000425048 COILP38432 576 aaPredicted RBP2.46□□□□□ -2.02
LINC01040-201ENST00000425048 RPS5P46782 204 aaKnown RBP2.46□□□□□ -2.02
LINC01040-201ENST00000425048 OR1D4P47884 311 aa2.46□□□□□ -2.02
LINC01040-201ENST00000425048 AKR1D1P51857 326 aa2.46□□□□□ -2.02
LINC01040-201ENST00000425048 KPNA2P52292 529 aaKnown RBP2.46□□□□□ -2.02
LINC01040-201ENST00000425048 UGT2B15P54855 530 aa2.46□□□□□ -2.02
LINC01040-201ENST00000425048 PSMD4P55036 377 aaKnown RBP2.46□□□□□ -2.02
LINC01040-201ENST00000425048 CDH4P55283 916 aa2.46□□□□□ -2.02
LINC01040-201ENST00000425048 AP1S1P61966 158 aa2.46□□□□□ -2.02
LINC01040-201ENST00000425048 MRPS22P82650 360 aaKnown RBP2.46□□□□□ -2.02
LINC01040-201ENST00000425048 MXD4Q14582 209 aaPredicted RBP2.46□□□□□ -2.02
LINC01040-201ENST00000425048 TRAM2Q15035 370 aa2.46□□□□□ -2.02
LINC01040-201ENST00000425048 OR1C1Q15619 314 aa2.46□□□□□ -2.02
LINC01040-201ENST00000425048 NEDD8Q15843 81 aa2.46□□□□□ -2.02
LINC01040-201ENST00000425048 GPAT3Q53EU6 434 aa2.46□□□□□ -2.02
LINC01040-201ENST00000425048 PABPC1L2AQ5JQF8 200 aa2.46□□□□□ -2.02
LINC01040-201ENST00000425048 SAPCD1Q5SSQ6 148 aa2.46□□□□□ -2.02
LINC01040-201ENST00000425048 DDI2Q5TDH0 399 aa2.46□□□□□ -2.02
LINC01040-201ENST00000425048 TMEM236Q5W0B7 351 aa2.46□□□□□ -2.02
LINC01040-201ENST00000425048 C3orf33Q6P1S2 294 aa2.46□□□□□ -2.02
LINC01040-201ENST00000425048 SHQ1Q6PI26 577 aaKnown RBP2.46□□□□□ -2.02
LINC01040-201ENST00000425048 ZNF773Q6PK81 442 aa2.46□□□□□ -2.02
LINC01040-201ENST00000425048 SLC16A13Q7RTY0 426 aa2.46□□□□□ -2.02
LINC01040-201ENST00000425048 SNX20Q7Z614 316 aa2.46□□□□□ -2.02
LINC01040-201ENST00000425048 SYVN1Q86TM6 617 aa2.46□□□□□ -2.02
LINC01040-201ENST00000425048 COMMD7Q86VX2 200 aa2.46□□□□□ -2.02
LINC01040-201ENST00000425048 NUDCD3Q8IVD9 361 aa2.46□□□□□ -2.02
LINC01040-201ENST00000425048 PDIK1LQ8N165 341 aa2.46□□□□□ -2.02
LINC01040-201ENST00000425048 CYP4Z2PQ8N1L4 340 aa2.46□□□□□ -2.02
LINC01040-201ENST00000425048 C9orf62Q8N4C0 152 aa2.46□□□□□ -2.02
LINC01040-201ENST00000425048 DCAF4L2Q8NA75 395 aa2.46□□□□□ -2.02
LINC01040-201ENST00000425048 OR6M1Q8NGM8 313 aa2.46□□□□□ -2.02
LINC01040-201ENST00000425048 PSMA8Q8TAA3 256 aa2.46□□□□□ -2.02
LINC01040-201ENST00000425048 MARCH1Q8TCQ1 289 aa2.46□□□□□ -2.02
LINC01040-201ENST00000425048 PNPT1Q8TCS8 783 aaKnown RBP2.46□□□□□ -2.02
LINC01040-201ENST00000425048 BLOC1S5Q8TDH9 187 aa2.46□□□□□ -2.02
LINC01040-201ENST00000425048 DNAJA4Q8WW22 397 aaPredicted RBP2.46□□□□□ -2.02
LINC01040-201ENST00000425048 HTR3CQ8WXA8 447 aa2.46□□□□□ -2.02
LINC01040-201ENST00000425048 SHC3Q92529 594 aa2.46□□□□□ -2.02
LINC01040-201ENST00000425048 RPL3LQ92901 407 aaKnown RBP2.46□□□□□ -2.02
LINC01040-201ENST00000425048 RBPMSQ93062 196 aaKnown RBP2.46□□□□□ -2.02
LINC01040-201ENST00000425048 LRRC39Q96DD0 335 aa2.46□□□□□ -2.02
LINC01040-201ENST00000425048 GPR137Q96N19 417 aa2.46□□□□□ -2.02
LINC01040-201ENST00000425048 LINC00052Q96N35 136 aa2.46□□□□□ -2.02
LINC01040-201ENST00000425048 CSPG4P5Q96PW8 444 aa2.46□□□□□ -2.02
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms