RNA–Protein interactions for RNA: ENST00000414829.2

LIMS1-206, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 439 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-206ENST00000414829 GPA33Q99795 319 aa12.79□□□□□ -0.36
LIMS1-206ENST00000414829 TEX12Q9BXU0 123 aa12.79□□□□□ -0.36
LIMS1-206ENST00000414829 NELFAQ9H3P2 528 aa12.79□□□□□ -0.36
LIMS1-206ENST00000414829 PLEKHF2Q9H8W4 249 aa12.79□□□□□ -0.36
LIMS1-206ENST00000414829 SIAEQ9HAT2 523 aa12.79□□□□□ -0.36
LIMS1-206ENST00000414829 TBC1D23Q9NUY8 699 aa12.79□□□□□ -0.36
LIMS1-206ENST00000414829 IL20Q9NYY1 176 aa12.79□□□□□ -0.36
LIMS1-206ENST00000414829 NPAP1Q9NZP6 1156 aa12.79□□□□□ -0.36
LIMS1-206ENST00000414829 ST6GALNAC2Q9UJ37 374 aa12.79□□□□□ -0.36
LIMS1-206ENST00000414829 POU2F3Q9UKI9 436 aa12.79□□□□□ -0.36
LIMS1-206ENST00000414829 SETXQ7Z333 2677 aaKnown RBP12.78□□□□□ -0.36
LIMS1-206ENST00000414829 A0A1W2PR80 420 aa12.78□□□□□ -0.36
LIMS1-206ENST00000414829 SLC22A23A1A5C7 686 aa12.78□□□□□ -0.36
LIMS1-206ENST00000414829 PPP1R3DO95685 299 aa12.78□□□□□ -0.36
LIMS1-206ENST00000414829 RENP00797 406 aa12.78□□□□□ -0.36
LIMS1-206ENST00000414829 IGLV1-44P01699 117 aa12.78□□□□□ -0.36
LIMS1-206ENST00000414829 CD79AP11912 226 aa12.78□□□□□ -0.36
LIMS1-206ENST00000414829 ZNF26P17031 533 aaPredicted RBP12.78□□□□□ -0.36
LIMS1-206ENST00000414829 LOXP28300 417 aaPredicted RBP12.78□□□□□ -0.36
LIMS1-206ENST00000414829 CDH11P55287 796 aa12.78□□□□□ -0.36
LIMS1-206ENST00000414829 ACTR3P61158 418 aa12.78□□□□□ -0.36
LIMS1-206ENST00000414829 PCBD1P61457 104 aa12.78□□□□□ -0.36
LIMS1-206ENST00000414829 GABPB1Q06547 395 aaPredicted RBP12.78□□□□□ -0.36
LIMS1-206ENST00000414829 ATP6AP1Q15904 470 aa12.78□□□□□ -0.36
LIMS1-206ENST00000414829 ZNF672Q499Z4 452 aaPredicted RBP12.78□□□□□ -0.36
LIMS1-206ENST00000414829 MESTQ5EB52 335 aa12.78□□□□□ -0.36
LIMS1-206ENST00000414829 TMEM53Q6P2H8 277 aa12.78□□□□□ -0.36
LIMS1-206ENST00000414829 SHQ1Q6PI26 577 aaKnown RBP12.78□□□□□ -0.36
LIMS1-206ENST00000414829 THSD4Q6ZMP0 1018 aa12.78□□□□□ -0.36
LIMS1-206ENST00000414829 SLC16A14Q7RTX9 510 aa12.78□□□□□ -0.36
LIMS1-206ENST00000414829 HIPK1Q86Z02 1210 aa12.78□□□□□ -0.36
LIMS1-206ENST00000414829 PIAS4Q8N2W9 510 aaPredicted RBP12.78□□□□□ -0.36
LIMS1-206ENST00000414829 ZNF611Q8N823 705 aa12.78□□□□□ -0.36
LIMS1-206ENST00000414829 OR2T33Q8NG76 320 aa12.78□□□□□ -0.36
LIMS1-206ENST00000414829 TEX47Q8TBZ9 253 aa12.78□□□□□ -0.36
LIMS1-206ENST00000414829 PIGTQ969N2 578 aa12.78□□□□□ -0.36
LIMS1-206ENST00000414829 GTPBP3Q969Y2 492 aaKnown RBP12.78□□□□□ -0.36
LIMS1-206ENST00000414829 UBTD1Q9HAC8 227 aa12.78□□□□□ -0.36
LIMS1-206ENST00000414829 VNN3Q9NY84 501 aa12.78□□□□□ -0.36
LIMS1-206ENST00000414829 VSX1Q9NZR4 365 aaPredicted RBP12.78□□□□□ -0.36
LIMS1-206ENST00000414829 PDP1Q9P0J1 537 aaPredicted RBP12.78□□□□□ -0.36
LIMS1-206ENST00000414829 ENOPH1Q9UHY7 261 aa12.78□□□□□ -0.36
LIMS1-206ENST00000414829 IER3IP1Q9Y5U9 82 aa12.78□□□□□ -0.36
LIMS1-206ENST00000414829 CRYBG3Q68DQ2 2970 aa12.77□□□□□ -0.36
LIMS1-206ENST00000414829 DPRXA6NFQ7 191 aa12.77□□□□□ -0.37
LIMS1-206ENST00000414829 VSTM5A8MXK1 200 aa12.77□□□□□ -0.37
LIMS1-206ENST00000414829 SOCS2O14508 198 aa12.77□□□□□ -0.37
LIMS1-206ENST00000414829 SEC14L2O76054 403 aa12.77□□□□□ -0.37
LIMS1-206ENST00000414829 SLC2A10O95528 541 aa12.77□□□□□ -0.37
LIMS1-206ENST00000414829 GASTP01350 101 aa12.77□□□□□ -0.37
LIMS1-206ENST00000414829 IFNGP01579 166 aa12.77□□□□□ -0.37
LIMS1-206ENST00000414829 MSR1P21757 451 aa12.77□□□□□ -0.37
LIMS1-206ENST00000414829 PTDSS1P48651 473 aaKnown RBP12.77□□□□□ -0.37
LIMS1-206ENST00000414829 FXYD6P3P58550 94 aa12.77□□□□□ -0.37
LIMS1-206ENST00000414829 MYBPC1Q00872 1141 aa12.77□□□□□ -0.37
LIMS1-206ENST00000414829 PLP2Q04941 152 aa12.77□□□□□ -0.37
LIMS1-206ENST00000414829 CCNIQ14094 377 aa12.77□□□□□ -0.37
LIMS1-206ENST00000414829 SLC25A47Q6Q0C1 308 aa12.77□□□□□ -0.37
LIMS1-206ENST00000414829 ZDHHC13Q8IUH4 622 aa12.77□□□□□ -0.37
LIMS1-206ENST00000414829 SVOPLQ8N434 492 aa12.77□□□□□ -0.37
LIMS1-206ENST00000414829 ATG16L2Q8NAA4 619 aa12.77□□□□□ -0.37
LIMS1-206ENST00000414829 OR4F15Q8NGB8 312 aa12.77□□□□□ -0.37
LIMS1-206ENST00000414829 NSMAFQ92636 917 aa12.77□□□□□ -0.37
LIMS1-206ENST00000414829 AKAP1Q92667 903 aaKnown RBP eCLIP12.77□□□□□ -0.37
LIMS1-206ENST00000414829 SLCO4A1Q96BD0 722 aa12.77□□□□□ -0.37
LIMS1-206ENST00000414829 RASD2Q96D21 266 aa12.77□□□□□ -0.37
LIMS1-206ENST00000414829 MBD6Q96DN6 1003 aa12.77□□□□□ -0.37
LIMS1-206ENST00000414829 SAMD8Q96LT4 415 aa12.77□□□□□ -0.37
LIMS1-206ENST00000414829 FEVQ99581 238 aa12.77□□□□□ -0.37
LIMS1-206ENST00000414829 OSBPL10Q9BXB5 764 aa12.77□□□□□ -0.37
LIMS1-206ENST00000414829 CCNB1IP1Q9NPC3 277 aa12.77□□□□□ -0.37
LIMS1-206ENST00000414829 IL20RAQ9UHF4 553 aa12.77□□□□□ -0.37
LIMS1-206ENST00000414829 IGHV1-18A0A0C4DH31 117 aa12.76□□□□□ -0.37
LIMS1-206ENST00000414829 C12orf71A8MTZ7 269 aa12.76□□□□□ -0.37
LIMS1-206ENST00000414829 KHDRBS3O75525 346 aaKnown RBP12.76□□□□□ -0.37
LIMS1-206ENST00000414829 TIPRLO75663 272 aa12.76□□□□□ -0.37
LIMS1-206ENST00000414829 HLA-HP01893 362 aa12.76□□□□□ -0.37
LIMS1-206ENST00000414829 ERFP50548 548 aa12.76□□□□□ -0.37
LIMS1-206ENST00000414829 IDH3GP51553 393 aaPredicted RBP12.76□□□□□ -0.37
LIMS1-206ENST00000414829 KRTAP10-9P60411 292 aa12.76□□□□□ -0.37
LIMS1-206ENST00000414829 GLO1Q04760 184 aa12.76□□□□□ -0.37
LIMS1-206ENST00000414829 FMODQ06828 376 aa12.76□□□□□ -0.37
LIMS1-206ENST00000414829 NPRL3Q12980 569 aa12.76□□□□□ -0.37
LIMS1-206ENST00000414829 CLEC12AQ5QGZ9 265 aa12.76□□□□□ -0.37
LIMS1-206ENST00000414829 ZNF544Q6NX49 715 aa12.76□□□□□ -0.37
LIMS1-206ENST00000414829 FOXL2NBQ6ZUU3 175 aa12.76□□□□□ -0.37
LIMS1-206ENST00000414829 MDP1Q86V88 176 aa12.76□□□□□ -0.37
LIMS1-206ENST00000414829 GLB1L2Q8IW92 636 aa12.76□□□□□ -0.37
LIMS1-206ENST00000414829 WDFY1Q8IWB7 410 aa12.76□□□□□ -0.37
LIMS1-206ENST00000414829 LNX2Q8N448 690 aa12.76□□□□□ -0.37
LIMS1-206ENST00000414829 OR5K1Q8NHB7 308 aa12.76□□□□□ -0.37
LIMS1-206ENST00000414829 UTP4Q969X6 686 aaKnown RBP12.76□□□□□ -0.37
LIMS1-206ENST00000414829 CCL19Q99731 98 aa12.76□□□□□ -0.37
LIMS1-206ENST00000414829 PRRG3Q9BZD7 231 aa12.76□□□□□ -0.37
LIMS1-206ENST00000414829 SYT4Q9H2B2 425 aa12.76□□□□□ -0.37
LIMS1-206ENST00000414829 CXorf56Q9H5V9 222 aa12.76□□□□□ -0.37
LIMS1-206ENST00000414829 RNF121Q9H920 327 aa12.76□□□□□ -0.37
LIMS1-206ENST00000414829 BEX4Q9NWD9 120 aaPredicted RBP12.76□□□□□ -0.37
LIMS1-206ENST00000414829 B3GNT2Q9NY97 397 aa12.76□□□□□ -0.37
LIMS1-206ENST00000414829 KLHL21Q9UJP4 597 aa12.76□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms