RNA–Protein interactions for RNA: ENST00000389857.10

CCDC88C-204, Transcript of coiled-coil domain containing 88C, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CCDC88C, Length 7,474 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-204ENST00000389857 HOXD12P35452 270 aa11.79□□□□□ -0.52
CCDC88C-204ENST00000389857 MARCH8Q5T0T0 291 aa11.79□□□□□ -0.52
CCDC88C-204ENST00000389857 YOD1Q5VVQ6 348 aaPredicted RBP11.79□□□□□ -0.52
CCDC88C-204ENST00000389857 PDCD1LG2Q9BQ51 273 aa11.79□□□□□ -0.52
CCDC88C-204ENST00000389857 PADI1Q9ULC6 663 aa11.79□□□□□ -0.52
CCDC88C-204ENST00000389857 RAB27BO00194 218 aa11.79□□□□□ -0.52
CCDC88C-204ENST00000389857 CNMDO75829 334 aa11.79□□□□□ -0.52
CCDC88C-204ENST00000389857 ALDOCP09972 364 aaKnown RBP11.79□□□□□ -0.52
CCDC88C-204ENST00000389857 ELAVL4P26378 380 aaKnown RBP11.79□□□□□ -0.52
CCDC88C-204ENST00000389857 PMPCAQ10713 525 aa11.79□□□□□ -0.52
CCDC88C-204ENST00000389857 OR10X1Q8NGY0 326 aa11.79□□□□□ -0.52
CCDC88C-204ENST00000389857 STACQ99469 402 aa11.79□□□□□ -0.52
CCDC88C-204ENST00000389857 NDFIP1Q9BT67 221 aa11.79□□□□□ -0.52
CCDC88C-204ENST00000389857 GPR55Q9Y2T6 319 aaPredicted RBP11.79□□□□□ -0.52
CCDC88C-204ENST00000389857 NUMBLQ9Y6R0 609 aa11.79□□□□□ -0.52
CCDC88C-204ENST00000389857 ATXN1LP0C7T5 689 aaKnown RBP11.79□□□□□ -0.52
CCDC88C-204ENST00000389857 NDUFB7P17568 137 aa11.79□□□□□ -0.52
CCDC88C-204ENST00000389857 APOBEC1P41238 236 aaKnown RBP11.79□□□□□ -0.52
CCDC88C-204ENST00000389857 TGM4P49221 684 aa11.79□□□□□ -0.52
CCDC88C-204ENST00000389857 GLYATL3Q5SZD4 288 aa11.79□□□□□ -0.52
CCDC88C-204ENST00000389857 GDF7Q7Z4P5 450 aa11.79□□□□□ -0.52
CCDC88C-204ENST00000389857 OR2T11Q8NH01 316 aa11.79□□□□□ -0.52
CCDC88C-204ENST00000389857 SLC25A43Q8WUT9 341 aaPredicted RBP11.79□□□□□ -0.52
CCDC88C-204ENST00000389857 TAF9BQ9HBM6 251 aa11.79□□□□□ -0.52
CCDC88C-204ENST00000389857 WASH6PQ9NQA3 447 aa11.79□□□□□ -0.52
CCDC88C-204ENST00000389857 RBFOX1Q9NWB1 397 aaKnown RBP11.79□□□□□ -0.52
CCDC88C-204ENST00000389857 KIR2DS1A0A191URI9 304 aa11.79□□□□□ -0.52
CCDC88C-204ENST00000389857 A0A1B0GX78 115 aa11.79□□□□□ -0.52
CCDC88C-204ENST00000389857 CASP3P42574 277 aa11.79□□□□□ -0.52
CCDC88C-204ENST00000389857 KIR2DS4P43632 304 aa11.79□□□□□ -0.52
CCDC88C-204ENST00000389857 KIR2DS1Q14954 304 aa11.79□□□□□ -0.52
CCDC88C-204ENST00000389857 IAH1Q2TAA2 248 aaPredicted RBP11.79□□□□□ -0.52
CCDC88C-204ENST00000389857 PHLDA2Q53GA4 152 aa11.79□□□□□ -0.52
CCDC88C-204ENST00000389857 OR8G2PQ6IF36 304 aa11.79□□□□□ -0.52
CCDC88C-204ENST00000389857 DCXRQ7Z4W1 244 aa11.79□□□□□ -0.52
CCDC88C-204ENST00000389857 SLC51BQ86UW2 128 aa11.79□□□□□ -0.52
CCDC88C-204ENST00000389857 C11orf40Q8WZ69 217 aa11.79□□□□□ -0.52
CCDC88C-204ENST00000389857 ZC3HAV1LQ96H79 300 aaKnown RBP11.79□□□□□ -0.52
CCDC88C-204ENST00000389857 HS3ST3A1Q9Y663 406 aa11.79□□□□□ -0.52
CCDC88C-204ENST00000389857 USP3Q9Y6I4 520 aa11.79□□□□□ -0.52
CCDC88C-204ENST00000389857 HTR4Q13639 388 aa11.78□□□□□ -0.52
CCDC88C-204ENST00000389857 MLF2Q15773 248 aaPredicted RBP11.78□□□□□ -0.52
CCDC88C-204ENST00000389857 LDLRAD1Q5T700 205 aa11.78□□□□□ -0.52
CCDC88C-204ENST00000389857 H1FNTQ75WM6 255 aaPredicted RBP11.78□□□□□ -0.52
CCDC88C-204ENST00000389857 SOX7Q9BT81 388 aa11.78□□□□□ -0.52
CCDC88C-204ENST00000389857 MS4A8Q9BY19 250 aa11.78□□□□□ -0.52
CCDC88C-204ENST00000389857 PRSS16Q9NQE7 514 aa11.78□□□□□ -0.52
CCDC88C-204ENST00000389857 HS3ST2Q9Y278 367 aa11.78□□□□□ -0.52
CCDC88C-204ENST00000389857 HS3ST1O14792 307 aa11.78□□□□□ -0.52
CCDC88C-204ENST00000389857 TACR1P25103 407 aa11.78□□□□□ -0.52
CCDC88C-204ENST00000389857 DOK3Q7L591 496 aa11.78□□□□□ -0.52
CCDC88C-204ENST00000389857 C1orf87Q8N0U7 546 aa11.78□□□□□ -0.52
CCDC88C-204ENST00000389857 OR2AE1Q8NHA4 323 aa11.78□□□□□ -0.52
CCDC88C-204ENST00000389857 GATA6Q92908 595 aa11.78□□□□□ -0.52
CCDC88C-204ENST00000389857 FIZ1Q96SL8 496 aa11.78□□□□□ -0.52
CCDC88C-204ENST00000389857 LAMB4A4D0S4 1761 aa11.78□□□□□ -0.52
CCDC88C-204ENST00000389857 DNAJC25-GNG10A0A024R161 153 aa11.78□□□□□ -0.52
CCDC88C-204ENST00000389857 MAGEB4O15481 346 aaPredicted RBP11.78□□□□□ -0.52
CCDC88C-204ENST00000389857 IGFBP1P08833 259 aaPredicted RBP11.78□□□□□ -0.52
CCDC88C-204ENST00000389857 FPR3P25089 353 aa11.78□□□□□ -0.52
CCDC88C-204ENST00000389857 SHC1P29353 583 aa11.78□□□□□ -0.52
CCDC88C-204ENST00000389857 CSNK1EP49674 416 aaKnown RBP11.78□□□□□ -0.52
CCDC88C-204ENST00000389857 TMEM255BQ8WV15 326 aa11.78□□□□□ -0.52
CCDC88C-204ENST00000389857 FBXL4Q9UKA2 621 aa11.78□□□□□ -0.52
CCDC88C-204ENST00000389857 A0A1B0GWA3 101 aa11.78□□□□□ -0.52
CCDC88C-204ENST00000389857 ZFP92A6NM28 416 aa11.78□□□□□ -0.52
CCDC88C-204ENST00000389857 ABCD4O14678 606 aa11.78□□□□□ -0.52
CCDC88C-204ENST00000389857 CTNSO60931 367 aa11.78□□□□□ -0.52
CCDC88C-204ENST00000389857 ALOX12BO75342 701 aa11.78□□□□□ -0.52
CCDC88C-204ENST00000389857 CD14P08571 375 aa11.78□□□□□ -0.52
CCDC88C-204ENST00000389857 GLIPR1L1Q6UWM5 242 aa11.78□□□□□ -0.52
CCDC88C-204ENST00000389857 LILRB4Q8NHJ6 448 aa11.78□□□□□ -0.52
CCDC88C-204ENST00000389857 LYRM4Q9HD34 91 aa11.78□□□□□ -0.52
CCDC88C-204ENST00000389857 BTNL8Q6UX41 500 aa11.78□□□□□ -0.52
CCDC88C-204ENST00000389857 TM4SF18Q96CE8 201 aa11.78□□□□□ -0.52
CCDC88C-204ENST00000389857 MBOAT4Q96T53 435 aa11.78□□□□□ -0.52
CCDC88C-204ENST00000389857 GAREM1Q9H706 876 aa11.78□□□□□ -0.52
CCDC88C-204ENST00000389857 MYO9BQ13459 2157 aa11.78□□□□□ -0.52
CCDC88C-204ENST00000389857 SH2D1BO14796 132 aa11.78□□□□□ -0.52
CCDC88C-204ENST00000389857 ACKR3P25106 362 aa11.78□□□□□ -0.52
CCDC88C-204ENST00000389857 RAD52P43351 418 aa11.78□□□□□ -0.52
CCDC88C-204ENST00000389857 FAM111BQ6SJ93 734 aa11.78□□□□□ -0.52
CCDC88C-204ENST00000389857 TFAP2EQ6VUC0 442 aa11.78□□□□□ -0.52
CCDC88C-204ENST00000389857 SIAH3Q8IW03 269 aa11.78□□□□□ -0.52
CCDC88C-204ENST00000389857 TMEM130Q8N3G9 435 aa11.78□□□□□ -0.52
CCDC88C-204ENST00000389857 ZNRF4Q8WWF5 429 aa11.78□□□□□ -0.52
CCDC88C-204ENST00000389857 PIGTQ969N2 578 aa11.78□□□□□ -0.52
CCDC88C-204ENST00000389857 NDRG4Q9ULP0 352 aaKnown RBP11.78□□□□□ -0.52
CCDC88C-204ENST00000389857 S100A11P31949 105 aa11.77□□□□□ -0.52
CCDC88C-204ENST00000389857 ZNF718Q3SXZ3 478 aa11.77□□□□□ -0.52
CCDC88C-204ENST00000389857 MARCH3Q86UD3 253 aa11.77□□□□□ -0.52
CCDC88C-204ENST00000389857 OR52H1Q8NGJ2 320 aa11.77□□□□□ -0.52
CCDC88C-204ENST00000389857 KIR3DX1Q9H7L2 352 aa11.77□□□□□ -0.52
CCDC88C-204ENST00000389857 ANKRD36CQ5JPF3 1778 aa11.77□□□□□ -0.52
CCDC88C-204ENST00000389857 OR6C76A6NM76 312 aa11.77□□□□□ -0.52
CCDC88C-204ENST00000389857 C1orf140Q5VVS0 124 aa11.77□□□□□ -0.52
CCDC88C-204ENST00000389857 KCTD11Q693B1 232 aa11.77□□□□□ -0.52
CCDC88C-204ENST00000389857 GRINAQ7Z429 371 aa11.77□□□□□ -0.52
CCDC88C-204ENST00000389857 ADGRF3Q8IZF5 1079 aa11.77□□□□□ -0.52
CCDC88C-204ENST00000389857 BCO1Q9HAY6 547 aa11.77□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 52.6 ms