RNA–Protein interactions for RNA: ENST00000376646.3

VPS13A-206, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 5 BASIC

Gene VPS13A, Length 2,262 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-206ENST00000376646 ZNF331Q9NQX6 463 aaPredicted RBP1.35□□□□□ -2.19
VPS13A-206ENST00000376646 RAB20Q9NX57 234 aa1.35□□□□□ -2.19
VPS13A-206ENST00000376646 ZNF226Q9NYT6 803 aa1.35□□□□□ -2.19
VPS13A-206ENST00000376646 PTTG3PQ9NZH4 202 aa1.35□□□□□ -2.19
VPS13A-206ENST00000376646 CDC42BPBQ9Y5S2 1711 aa1.34□□□□□ -2.19
VPS13A-206ENST00000376646 USP47Q96K76 1375 aa1.34□□□□□ -2.19
VPS13A-206ENST00000376646 NINLQ9Y2I6 1382 aa1.34□□□□□ -2.19
VPS13A-206ENST00000376646 A0A075B6Q4 140 aa1.34□□□□□ -2.2
VPS13A-206ENST00000376646 IGKV6-21A0A0C4DH24 114 aa1.34□□□□□ -2.2
VPS13A-206ENST00000376646 PRSS37A4D1T9 235 aa1.34□□□□□ -2.2
VPS13A-206ENST00000376646 HIDE1A8MVS5 230 aa1.34□□□□□ -2.2
VPS13A-206ENST00000376646 PEX7O00628 323 aa1.34□□□□□ -2.2
VPS13A-206ENST00000376646 AIM2O14862 343 aa1.34□□□□□ -2.2
VPS13A-206ENST00000376646 KMOO15229 486 aa1.34□□□□□ -2.2
VPS13A-206ENST00000376646 SUPT3HO75486 399 aa1.34□□□□□ -2.2
VPS13A-206ENST00000376646 EEDO75530 441 aaKnown RBP1.34□□□□□ -2.2
VPS13A-206ENST00000376646 H6PDO95479 791 aa1.34□□□□□ -2.2
VPS13A-206ENST00000376646 PCCAP05165 728 aaPredicted RBP1.34□□□□□ -2.2
VPS13A-206ENST00000376646 IGHV3-43DP0DP04 118 aa1.34□□□□□ -2.2
VPS13A-206ENST00000376646 ZNF30P17039 623 aa1.34□□□□□ -2.2
VPS13A-206ENST00000376646 AK4P27144 223 aaPredicted RBP1.34□□□□□ -2.2
VPS13A-206ENST00000376646 SERPINB5P36952 375 aa1.34□□□□□ -2.2
VPS13A-206ENST00000376646 NAA10P41227 235 aaPredicted RBP1.34□□□□□ -2.2
VPS13A-206ENST00000376646 SYKP43405 635 aa1.34□□□□□ -2.2
VPS13A-206ENST00000376646 NMUP48645 174 aa1.34□□□□□ -2.2
VPS13A-206ENST00000376646 CSNK1DP48730 415 aa1.34□□□□□ -2.2
VPS13A-206ENST00000376646 NCBP2P52298 156 aaKnown RBP eCLIP1.34□□□□□ -2.2
VPS13A-206ENST00000376646 KRTAP10-10P60014 251 aa1.34□□□□□ -2.2
VPS13A-206ENST00000376646 GBE1Q04446 702 aa1.34□□□□□ -2.2
VPS13A-206ENST00000376646 SMARCB1Q12824 385 aa1.34□□□□□ -2.2
VPS13A-206ENST00000376646 RSPO1Q2MKA7 263 aaPredicted RBP1.34□□□□□ -2.2
VPS13A-206ENST00000376646 CYB5R2Q6BCY4 276 aa1.34□□□□□ -2.2
VPS13A-206ENST00000376646 TMEM135Q86UB9 458 aa1.34□□□□□ -2.2
VPS13A-206ENST00000376646 ZNF429Q86V71 674 aa1.34□□□□□ -2.2
VPS13A-206ENST00000376646 PDIK1LQ8N165 341 aa1.34□□□□□ -2.2
VPS13A-206ENST00000376646 ARIH2OSQ8N7S6 290 aa1.34□□□□□ -2.2
VPS13A-206ENST00000376646 CCDC148Q8NFR7 591 aa1.34□□□□□ -2.2
VPS13A-206ENST00000376646 OR51G1Q8NGK1 321 aa1.34□□□□□ -2.2
VPS13A-206ENST00000376646 ZNF502Q8TBZ5 544 aa1.34□□□□□ -2.2
VPS13A-206ENST00000376646 BLOC1S5Q8TDH9 187 aa1.34□□□□□ -2.2
VPS13A-206ENST00000376646 SLC38A4Q969I6 547 aa1.34□□□□□ -2.2
VPS13A-206ENST00000376646 AURKBQ96GD4 344 aaPredicted RBP1.34□□□□□ -2.2
VPS13A-206ENST00000376646 PKNOX2Q96KN3 472 aa1.34□□□□□ -2.2
VPS13A-206ENST00000376646 ECSITQ9BQ95 431 aa1.34□□□□□ -2.2
VPS13A-206ENST00000376646 C20orf24Q9BUV8 137 aa1.34□□□□□ -2.2
VPS13A-206ENST00000376646 OSBPL10Q9BXB5 764 aa1.34□□□□□ -2.2
VPS13A-206ENST00000376646 RPF2Q9H7B2 306 aaKnown RBP1.34□□□□□ -2.2
VPS13A-206ENST00000376646 TMEM185BQ9H7F4 350 aa1.34□□□□□ -2.2
VPS13A-206ENST00000376646 ZNF160Q9HCG1 818 aa1.34□□□□□ -2.2
VPS13A-206ENST00000376646 CTPS2Q9NRF8 586 aa1.34□□□□□ -2.2
VPS13A-206ENST00000376646 GNPTGQ9UJJ9 305 aa1.34□□□□□ -2.2
VPS13A-206ENST00000376646 KLK12Q9UKR0 248 aa1.34□□□□□ -2.2
VPS13A-206ENST00000376646 VANGL2Q9ULK5 521 aa1.34□□□□□ -2.2
VPS13A-206ENST00000376646 ING4Q9UNL4 249 aa1.34□□□□□ -2.2
VPS13A-206ENST00000376646 NFASCO94856 1347 aa1.34□□□□□ -2.2
VPS13A-206ENST00000376646 MAP3K15Q6ZN16 1313 aa1.34□□□□□ -2.2
VPS13A-206ENST00000376646 TRBV6-6A0A0A6YYG2 114 aa1.33□□□□□ -2.2
VPS13A-206ENST00000376646 ZNF816-ZNF321PA0A0X1KG74 233 aa1.33□□□□□ -2.2
VPS13A-206ENST00000376646 C11orf94C9JXX5 98 aa1.33□□□□□ -2.2
VPS13A-206ENST00000376646 CDC7O00311 574 aa1.33□□□□□ -2.2
VPS13A-206ENST00000376646 XKRYO14609 159 aa1.33□□□□□ -2.2
VPS13A-206ENST00000376646 DNAJB6O75190 326 aa1.33□□□□□ -2.2
VPS13A-206ENST00000376646 CDH16O75309 829 aa1.33□□□□□ -2.2
VPS13A-206ENST00000376646 SLC25A27O95847 323 aa1.33□□□□□ -2.2
VPS13A-206ENST00000376646 KRT14P02533 472 aa1.33□□□□□ -2.2
VPS13A-206ENST00000376646 PNMA6AP0CW24 399 aaPredicted RBP1.33□□□□□ -2.2
VPS13A-206ENST00000376646 CALM1P0DP23 149 aa1.33□□□□□ -2.2
VPS13A-206ENST00000376646 CALM2P0DP24 149 aa1.33□□□□□ -2.2
VPS13A-206ENST00000376646 CALM3P0DP25 149 aa1.33□□□□□ -2.2
VPS13A-206ENST00000376646 PSG2P11465 335 aa1.33□□□□□ -2.2
VPS13A-206ENST00000376646 ZNF250P15622 560 aa1.33□□□□□ -2.2
VPS13A-206ENST00000376646 C21orf59P57076 290 aa1.33□□□□□ -2.2
VPS13A-206ENST00000376646 NUTF2P61970 127 aaKnown RBP1.33□□□□□ -2.2
VPS13A-206ENST00000376646 SELENBP1Q13228 472 aa1.33□□□□□ -2.2
VPS13A-206ENST00000376646 CHRNA6Q15825 494 aa1.33□□□□□ -2.2
VPS13A-206ENST00000376646 ZSCAN26Q16670 478 aa1.33□□□□□ -2.2
VPS13A-206ENST00000376646 TMEM183BQ1AE95 376 aa1.33□□□□□ -2.2
VPS13A-206ENST00000376646 COA6Q5JTJ3 125 aaKnown RBP1.33□□□□□ -2.2
VPS13A-206ENST00000376646 SPANXN2Q5MJ10 180 aa1.33□□□□□ -2.2
VPS13A-206ENST00000376646 PPM1LQ5SGD2 360 aa1.33□□□□□ -2.2
VPS13A-206ENST00000376646 VAX1Q5SQQ9 334 aa1.33□□□□□ -2.2
VPS13A-206ENST00000376646 C6orf120Q7Z4R8 191 aa1.33□□□□□ -2.2
VPS13A-206ENST00000376646 CAMK2N1Q7Z7J9 78 aa1.33□□□□□ -2.2
VPS13A-206ENST00000376646 LUZP2Q86TE4 346 aa1.33□□□□□ -2.2
VPS13A-206ENST00000376646 MMAAQ8IVH4 418 aaKnown RBP1.33□□□□□ -2.2
VPS13A-206ENST00000376646 TMEM183AQ8IXX5 376 aa1.33□□□□□ -2.2
VPS13A-206ENST00000376646 ASB9Q96DX5 294 aa1.33□□□□□ -2.2
VPS13A-206ENST00000376646 ZNF578Q96N58 590 aaPredicted RBP1.33□□□□□ -2.2
VPS13A-206ENST00000376646 CHP1Q99653 195 aa1.33□□□□□ -2.2
VPS13A-206ENST00000376646 RACGAP1Q9H0H5 632 aa1.33□□□□□ -2.2
VPS13A-206ENST00000376646 NEUROG2Q9H2A3 272 aa1.33□□□□□ -2.2
VPS13A-206ENST00000376646 CDC42EP4Q9H3Q1 356 aaKnown RBP1.33□□□□□ -2.2
VPS13A-206ENST00000376646 KCNJ16Q9NPI9 418 aa1.33□□□□□ -2.2
VPS13A-206ENST00000376646 SAMSN1Q9NSI8 373 aaKnown RBP1.33□□□□□ -2.2
VPS13A-206ENST00000376646 MRPS18BQ9Y676 258 aaKnown RBP1.33□□□□□ -2.2
VPS13A-206ENST00000376646 TRBV11-1A0A0K0K1C0 115 aa1.33□□□□□ -2.2
VPS13A-206ENST00000376646 NKX2-6A6NCS4 301 aa1.33□□□□□ -2.2
VPS13A-206ENST00000376646 SPECC1L-ADORA2AF8WAN1 911 aa1.33□□□□□ -2.2
VPS13A-206ENST00000376646 TEX46H3BTG2 121 aa1.33□□□□□ -2.2
VPS13A-206ENST00000376646 PES1O00541 588 aaKnown RBP1.33□□□□□ -2.2
Retrieved 100 of 20,778 RNA–protein pairs in 55.2 ms