RNA–Protein interactions for RNA: ENST00000375820.8

COL4A1-201, Transcript of collagen type IV alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL4A1, Length 6,532 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-201ENST00000375820 RAP2BP61225 183 aa12.62□□□□□ -0.39
COL4A1-201ENST00000375820 DCAF7P61962 342 aa12.62□□□□□ -0.39
COL4A1-201ENST00000375820 Q499Y3 187 aa12.62□□□□□ -0.39
COL4A1-201ENST00000375820 CLVS2Q5SYC1 327 aa12.62□□□□□ -0.39
COL4A1-201ENST00000375820 PTCRAQ6ISU1 281 aaPredicted RBP12.62□□□□□ -0.39
COL4A1-201ENST00000375820 RHOUQ7L0Q8 258 aa12.62□□□□□ -0.39
COL4A1-201ENST00000375820 PBX4Q9BYU1 374 aa12.62□□□□□ -0.39
COL4A1-201ENST00000375820 NMES1Q9C002 83 aa12.62□□□□□ -0.39
COL4A1-201ENST00000375820 RNF150Q9ULK6 438 aa12.62□□□□□ -0.39
COL4A1-201ENST00000375820 RAD52P43351 418 aa12.62□□□□□ -0.39
COL4A1-201ENST00000375820 DPPA2Q7Z7J5 298 aa12.62□□□□□ -0.39
COL4A1-201ENST00000375820 PXT1Q8NFP0 134 aa12.62□□□□□ -0.39
COL4A1-201ENST00000375820 A3GALT2U3KPV4 340 aa12.62□□□□□ -0.39
COL4A1-201ENST00000375820 SIRPB1O00241 398 aa12.61□□□□□ -0.39
COL4A1-201ENST00000375820 OR2T7P0C7T2 308 aa12.61□□□□□ -0.39
COL4A1-201ENST00000375820 ICAM2P13598 275 aa12.61□□□□□ -0.39
COL4A1-201ENST00000375820 PSMB1P20618 241 aaKnown RBP12.61□□□□□ -0.39
COL4A1-201ENST00000375820 OR10K2Q6IF99 312 aa12.61□□□□□ -0.39
COL4A1-201ENST00000375820 DBX2Q6ZNG2 339 aa12.61□□□□□ -0.39
COL4A1-201ENST00000375820 LSMEM2Q8N112 164 aa12.61□□□□□ -0.39
COL4A1-201ENST00000375820 HAVCR2Q8TDQ0 301 aa12.61□□□□□ -0.39
COL4A1-201ENST00000375820 CHST8Q9H2A9 424 aa12.61□□□□□ -0.39
COL4A1-201ENST00000375820 NTN4Q9HB63 628 aa12.61□□□□□ -0.39
COL4A1-201ENST00000375820 MBNL1Q9NR56 388 aaKnown RBP12.61□□□□□ -0.39
COL4A1-201ENST00000375820 ACSS1Q9NUB1 689 aaPredicted RBP12.61□□□□□ -0.39
COL4A1-201ENST00000375820 NECAP2Q9NVZ3 263 aa12.61□□□□□ -0.39
COL4A1-201ENST00000375820 TAS2R4Q9NYW5 299 aa12.61□□□□□ -0.39
COL4A1-201ENST00000375820 CLCF1Q9UBD9 225 aa12.61□□□□□ -0.39
COL4A1-201ENST00000375820 TEX51A0A1B0GUA7 166 aa12.61□□□□□ -0.39
COL4A1-201ENST00000375820 KDM4DQ6B0I6 523 aa12.61□□□□□ -0.39
COL4A1-201ENST00000375820 FAAP20Q6NZ36 180 aa12.61□□□□□ -0.39
COL4A1-201ENST00000375820 THNSL2Q86YJ6 484 aa12.61□□□□□ -0.39
COL4A1-201ENST00000375820 MISPQ8IVT2 679 aa12.61□□□□□ -0.39
COL4A1-201ENST00000375820 FAM58AQ8N1B3 248 aa12.61□□□□□ -0.39
COL4A1-201ENST00000375820 SLC22A24Q8N4F4 322 aa12.61□□□□□ -0.39
COL4A1-201ENST00000375820 PATE1Q8WXA2 126 aa12.61□□□□□ -0.39
COL4A1-201ENST00000375820 EDAQ92838 391 aa12.61□□□□□ -0.39
COL4A1-201ENST00000375820 C8orf44Q96CB5 159 aa12.61□□□□□ -0.39
COL4A1-201ENST00000375820 TEX37Q96LM6 180 aa12.61□□□□□ -0.39
COL4A1-201ENST00000375820 HRH3Q9Y5N1 445 aa12.61□□□□□ -0.39
COL4A1-201ENST00000375820 NAV1Q8NEY1 1877 aa12.61□□□□□ -0.39
COL4A1-201ENST00000375820 MRPS14O60783 128 aaKnown RBP12.61□□□□□ -0.39
COL4A1-201ENST00000375820 SLC2A10O95528 541 aa12.61□□□□□ -0.39
COL4A1-201ENST00000375820 RD3LP0DJH9 198 aa12.61□□□□□ -0.39
COL4A1-201ENST00000375820 SRMP19623 302 aa12.61□□□□□ -0.39
COL4A1-201ENST00000375820 PIGAP37287 484 aa12.61□□□□□ -0.39
COL4A1-201ENST00000375820 SPNS2Q8IVW8 549 aa12.61□□□□□ -0.39
COL4A1-201ENST00000375820 GCNT2Q8N0V5 402 aa12.61□□□□□ -0.39
COL4A1-201ENST00000375820 SLC16A11Q8NCK7 471 aa12.61□□□□□ -0.39
COL4A1-201ENST00000375820 OR51S1Q8NGJ8 323 aa12.61□□□□□ -0.39
COL4A1-201ENST00000375820 PTDSS2Q9BVG9 487 aa12.61□□□□□ -0.39
COL4A1-201ENST00000375820 WASH6PQ9NQA3 447 aa12.61□□□□□ -0.39
COL4A1-201ENST00000375820 GPR55Q9Y2T6 319 aaPredicted RBP12.61□□□□□ -0.39
COL4A1-201ENST00000375820 LTBP3Q9NS15 1303 aa12.61□□□□□ -0.39
COL4A1-201ENST00000375820 ARID1BQ8NFD5 2236 aaPredicted RBP12.61□□□□□ -0.39
COL4A1-201ENST00000375820 SCG5P05408 212 aa12.61□□□□□ -0.39
COL4A1-201ENST00000375820 UBE2MP61081 183 aaKnown RBP12.61□□□□□ -0.39
COL4A1-201ENST00000375820 KCNG3Q8TAE7 436 aa12.61□□□□□ -0.39
COL4A1-201ENST00000375820 SLC35B4Q969S0 331 aa12.61□□□□□ -0.39
COL4A1-201ENST00000375820 MYO9BQ13459 2157 aa12.61□□□□□ -0.39
COL4A1-201ENST00000375820 TCRBP04435 133 aa12.61□□□□□ -0.39
COL4A1-201ENST00000375820 CATSPERDQ86XM0 798 aa12.61□□□□□ -0.39
COL4A1-201ENST00000375820 WFDC5Q8TCV5 224 aa12.61□□□□□ -0.39
COL4A1-201ENST00000375820 Q96M85 177 aa12.61□□□□□ -0.39
COL4A1-201ENST00000375820 TMEM231Q9H6L2 316 aa12.61□□□□□ -0.39
COL4A1-201ENST00000375820 ACOXLQ9NUZ1 547 aa12.61□□□□□ -0.39
COL4A1-201ENST00000375820 FAM157BP0CG42 384 aa12.6□□□□□ -0.39
COL4A1-201ENST00000375820 MMP12P39900 470 aa12.6□□□□□ -0.39
COL4A1-201ENST00000375820 CSNK1DP48730 415 aa12.6□□□□□ -0.39
COL4A1-201ENST00000375820 PCBP3P57721 371 aaKnown RBP12.6□□□□□ -0.39
COL4A1-201ENST00000375820 PSORS1C1Q9UIG5 152 aa12.6□□□□□ -0.39
COL4A1-201ENST00000375820 ARFGEF2Q9Y6D5 1785 aa12.6□□□□□ -0.39
COL4A1-201ENST00000375820 SPINT2O43291 252 aa12.6□□□□□ -0.39
COL4A1-201ENST00000375820 SLCO4C1Q6ZQN7 724 aa12.6□□□□□ -0.39
COL4A1-201ENST00000375820 H2BFWTQ7Z2G1 175 aa12.6□□□□□ -0.39
COL4A1-201ENST00000375820 C15orf54Q8N8G6 183 aa12.6□□□□□ -0.39
COL4A1-201ENST00000375820 SPHK1Q9NYA1 384 aa12.6□□□□□ -0.39
COL4A1-201ENST00000375820 MYH1P12882 1939 aa12.6□□□□□ -0.39
COL4A1-201ENST00000375820 SOX15O60248 233 aa12.6□□□□□ -0.39
COL4A1-201ENST00000375820 RIPPLY1Q0D2K3 151 aa12.6□□□□□ -0.39
COL4A1-201ENST00000375820 ACTBL2Q562R1 376 aa12.6□□□□□ -0.39
COL4A1-201ENST00000375820 RHOXF1Q8NHV9 184 aa12.6□□□□□ -0.39
COL4A1-201ENST00000375820 DHRS4Q9BTZ2 278 aa12.6□□□□□ -0.39
COL4A1-201ENST00000375820 SEMA6CQ9H3T2 930 aa12.6□□□□□ -0.39
COL4A1-201ENST00000375820 A0A1W2PNR3 127 aa12.6□□□□□ -0.39
COL4A1-201ENST00000375820 A0A1W2PRV1 198 aa12.6□□□□□ -0.39
COL4A1-201ENST00000375820 PAPLNO95428 1278 aa12.6□□□□□ -0.39
COL4A1-201ENST00000375820 GRB2P62993 217 aaKnown RBP12.6□□□□□ -0.39
COL4A1-201ENST00000375820 OR8G1Q15617 311 aa12.6□□□□□ -0.39
COL4A1-201ENST00000375820 HAGHQ16775 308 aa12.6□□□□□ -0.39
COL4A1-201ENST00000375820 TRMT12Q53H54 448 aaKnown RBP12.6□□□□□ -0.39
COL4A1-201ENST00000375820 FAM26DQ5JW98 314 aa12.6□□□□□ -0.39
COL4A1-201ENST00000375820 MDGA2Q7Z553 956 aa12.6□□□□□ -0.39
COL4A1-201ENST00000375820 S100A7AQ86SG5 101 aa12.6□□□□□ -0.39
COL4A1-201ENST00000375820 OR1J2Q8NGS2 313 aa12.6□□□□□ -0.39
COL4A1-201ENST00000375820 TRIB1Q96RU8 372 aa12.6□□□□□ -0.39
COL4A1-201ENST00000375820 TMEM235A6NFC5 223 aa12.6□□□□□ -0.39
COL4A1-201ENST00000375820 M0R1B8 84 aa12.6□□□□□ -0.39
COL4A1-201ENST00000375820 SOHLH1Q5JUK2 328 aa12.6□□□□□ -0.39
COL4A1-201ENST00000375820 PAQR9Q6ZVX9 377 aa12.6□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 56.6 ms