RNA–Protein interactions for RNA: ENST00000374116.3

HMGA1-203, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,848 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-203ENST00000374116 KLHL26Q53HC5 615 aa12.89□□□□□ -0.35
HMGA1-203ENST00000374116 GLCCI1Q86VQ1 547 aa12.89□□□□□ -0.35
HMGA1-203ENST00000374116 ZNF440Q8IYI8 595 aa12.89□□□□□ -0.35
HMGA1-203ENST00000374116 TMEM99Q8N816 258 aa12.89□□□□□ -0.35
HMGA1-203ENST00000374116 OR4C3Q8NH37 302 aa12.89□□□□□ -0.35
HMGA1-203ENST00000374116 MARC2Q969Z3 335 aa12.89□□□□□ -0.35
HMGA1-203ENST00000374116 ARSGQ96EG1 525 aa12.89□□□□□ -0.35
HMGA1-203ENST00000374116 GSX2Q9BZM3 304 aa12.89□□□□□ -0.35
HMGA1-203ENST00000374116 SEMA4CQ9C0C4 833 aa12.89□□□□□ -0.35
HMGA1-203ENST00000374116 SLC6A15Q9H2J7 730 aa12.89□□□□□ -0.35
HMGA1-203ENST00000374116 LDAHQ9H6V9 325 aa12.89□□□□□ -0.35
HMGA1-203ENST00000374116 IFT22Q9H7X7 185 aa12.89□□□□□ -0.35
HMGA1-203ENST00000374116 ISG20L2Q9H9L3 353 aaKnown RBP12.89□□□□□ -0.35
HMGA1-203ENST00000374116 MCCC2Q9HCC0 563 aa12.89□□□□□ -0.35
HMGA1-203ENST00000374116 B3GAT2Q9NPZ5 323 aa12.89□□□□□ -0.35
HMGA1-203ENST00000374116 TRIM36Q9NQ86 728 aa12.89□□□□□ -0.35
HMGA1-203ENST00000374116 COQ3Q9NZJ6 369 aa12.89□□□□□ -0.35
HMGA1-203ENST00000374116 PPIEQ9UNP9 301 aaKnown RBP12.89□□□□□ -0.35
HMGA1-203ENST00000374116 CSAG2Q9Y5P2 127 aa12.89□□□□□ -0.35
HMGA1-203ENST00000374116 ATRXP46100 2492 aa12.89□□□□□ -0.35
HMGA1-203ENST00000374116 hCG_1807616A0A1W2PRN6 198 aa12.88□□□□□ -0.35
HMGA1-203ENST00000374116 ZC3H12DA2A288 527 aaKnown RBP12.88□□□□□ -0.35
HMGA1-203ENST00000374116 RNF13O43567 381 aa12.88□□□□□ -0.35
HMGA1-203ENST00000374116 RGS9O75916 674 aaPredicted RBP12.88□□□□□ -0.35
HMGA1-203ENST00000374116 NOS3P29474 1203 aa12.88□□□□□ -0.35
HMGA1-203ENST00000374116 ADH7P40394 386 aa12.88□□□□□ -0.35
HMGA1-203ENST00000374116 PPICP45877 212 aa12.88□□□□□ -0.35
HMGA1-203ENST00000374116 EVX1P49640 407 aa12.88□□□□□ -0.35
HMGA1-203ENST00000374116 POU4F2Q12837 409 aa12.88□□□□□ -0.35
HMGA1-203ENST00000374116 FHL1Q13642 323 aa12.88□□□□□ -0.35
HMGA1-203ENST00000374116 STK11Q15831 433 aa12.88□□□□□ -0.35
HMGA1-203ENST00000374116 PLA1AQ53H76 456 aa12.88□□□□□ -0.35
HMGA1-203ENST00000374116 FNDC7Q5VTL7 733 aa12.88□□□□□ -0.35
HMGA1-203ENST00000374116 VASNQ6EMK4 673 aa12.88□□□□□ -0.35
HMGA1-203ENST00000374116 CNIH2Q6PI25 160 aa12.88□□□□□ -0.35
HMGA1-203ENST00000374116 B3GLCTQ6Y288 498 aa12.88□□□□□ -0.35
HMGA1-203ENST00000374116 LSRQ86X29 649 aaPredicted RBP12.88□□□□□ -0.35
HMGA1-203ENST00000374116 FAM71CQ8NEG0 241 aa12.88□□□□□ -0.35
HMGA1-203ENST00000374116 C7orf57Q8NEG2 295 aa12.88□□□□□ -0.35
HMGA1-203ENST00000374116 NEIL3Q8TAT5 605 aa12.88□□□□□ -0.35
HMGA1-203ENST00000374116 FBXW5Q969U6 566 aa12.88□□□□□ -0.35
HMGA1-203ENST00000374116 SGTBQ96EQ0 304 aa12.88□□□□□ -0.35
HMGA1-203ENST00000374116 RBP7Q96R05 134 aa12.88□□□□□ -0.35
HMGA1-203ENST00000374116 LMF1Q96S06 567 aa12.88□□□□□ -0.35
HMGA1-203ENST00000374116 TIMP4Q99727 224 aa12.88□□□□□ -0.35
HMGA1-203ENST00000374116 MED28Q9H204 178 aa12.88□□□□□ -0.35
HMGA1-203ENST00000374116 OR51V1Q9H2C8 321 aa12.88□□□□□ -0.35
HMGA1-203ENST00000374116 GHITMQ9H3K2 345 aa12.88□□□□□ -0.35
HMGA1-203ENST00000374116 ICAM5Q9UMF0 924 aa12.88□□□□□ -0.35
HMGA1-203ENST00000374116 A0A087WUJ7 227 aa12.88□□□□□ -0.35
HMGA1-203ENST00000374116 SYNDIG1LA6NDD5 238 aa12.88□□□□□ -0.35
HMGA1-203ENST00000374116 H3BUI4 141 aa12.88□□□□□ -0.35
HMGA1-203ENST00000374116 REM1O75628 298 aa12.88□□□□□ -0.35
HMGA1-203ENST00000374116 OR2J2O76002 312 aa12.88□□□□□ -0.35
HMGA1-203ENST00000374116 NDUFB2O95178 105 aa12.88□□□□□ -0.35
HMGA1-203ENST00000374116 MT-ND5P03915 603 aa12.88□□□□□ -0.35
HMGA1-203ENST00000374116 SBK2P0C263 348 aa12.88□□□□□ -0.35
HMGA1-203ENST00000374116 STOMP27105 288 aa12.88□□□□□ -0.35
HMGA1-203ENST00000374116 MAP2K6P52564 334 aa12.88□□□□□ -0.35
HMGA1-203ENST00000374116 ACTC1P68032 377 aa12.88□□□□□ -0.35
HMGA1-203ENST00000374116 ACTA1P68133 377 aa12.88□□□□□ -0.35
HMGA1-203ENST00000374116 CRMP1Q14194 572 aa12.88□□□□□ -0.35
HMGA1-203ENST00000374116 TRAM1Q15629 374 aa12.88□□□□□ -0.35
HMGA1-203ENST00000374116 ZNF468Q5VIY5 522 aaPredicted RBP12.88□□□□□ -0.35
HMGA1-203ENST00000374116 HACD4Q5VWC8 232 aa12.88□□□□□ -0.35
HMGA1-203ENST00000374116 RPS19BP1Q86WX3 136 aaKnown RBP12.88□□□□□ -0.35
HMGA1-203ENST00000374116 PM20D2Q8IYS1 436 aa12.88□□□□□ -0.35
HMGA1-203ENST00000374116 PRR22Q8IZ63 422 aa12.88□□□□□ -0.35
HMGA1-203ENST00000374116 BEST3Q8N1M1 668 aa12.88□□□□□ -0.35
HMGA1-203ENST00000374116 EXD3Q8N9H8 876 aa12.88□□□□□ -0.35
HMGA1-203ENST00000374116 OR10H4Q8NGA5 316 aa12.88□□□□□ -0.35
HMGA1-203ENST00000374116 ADIPOR1Q96A54 375 aa12.88□□□□□ -0.35
HMGA1-203ENST00000374116 OR2M2Q96R28 347 aa12.88□□□□□ -0.35
HMGA1-203ENST00000374116 REG4Q9BYZ8 158 aa12.88□□□□□ -0.35
HMGA1-203ENST00000374116 ADGRL4Q9HBW9 690 aa12.88□□□□□ -0.35
HMGA1-203ENST00000374116 SLCO1C1Q9NYB5 712 aa12.88□□□□□ -0.35
HMGA1-203ENST00000374116 ADAM30Q9UKF2 790 aa12.88□□□□□ -0.35
HMGA1-203ENST00000374116 MAB21L2Q9Y586 359 aa12.88□□□□□ -0.35
HMGA1-203ENST00000374116 A0A0A6YYJ9 748 aa12.87□□□□□ -0.35
HMGA1-203ENST00000374116 MFSD2BA6NFX1 497 aa12.87□□□□□ -0.35
HMGA1-203ENST00000374116 KRBOX1C9JBD0 128 aa12.87□□□□□ -0.35
HMGA1-203ENST00000374116 GTPBP1O00178 669 aaKnown RBP12.87□□□□□ -0.35
HMGA1-203ENST00000374116 SNAPC5O75971 98 aa12.87□□□□□ -0.35
HMGA1-203ENST00000374116 ZFAND5O76080 213 aa12.87□□□□□ -0.35
HMGA1-203ENST00000374116 IL33O95760 270 aa12.87□□□□□ -0.35
HMGA1-203ENST00000374116 ITGB2P05107 769 aa12.87□□□□□ -0.35
HMGA1-203ENST00000374116 NR0B1P51843 470 aaKnown RBP12.87□□□□□ -0.35
HMGA1-203ENST00000374116 SLC16A1P53985 500 aa12.87□□□□□ -0.35
HMGA1-203ENST00000374116 TAS2R43P59537 309 aa12.87□□□□□ -0.35
HMGA1-203ENST00000374116 EBPQ15125 230 aaKnown RBP12.87□□□□□ -0.35
HMGA1-203ENST00000374116 ACER2Q5QJU3 275 aa12.87□□□□□ -0.35
HMGA1-203ENST00000374116 MZT2AQ6P582 158 aa12.87□□□□□ -0.35
HMGA1-203ENST00000374116 TMEM91Q6ZNR0 172 aa12.87□□□□□ -0.35
HMGA1-203ENST00000374116 LUZP2Q86TE4 346 aa12.87□□□□□ -0.35
HMGA1-203ENST00000374116 OR5W2Q8NH69 310 aa12.87□□□□□ -0.35
HMGA1-203ENST00000374116 ART5Q96L15 291 aa12.87□□□□□ -0.35
HMGA1-203ENST00000374116 ERMAPQ96PL5 475 aaPredicted RBP12.87□□□□□ -0.35
HMGA1-203ENST00000374116 UBL7Q96S82 380 aaPredicted RBP12.87□□□□□ -0.35
HMGA1-203ENST00000374116 TBX5Q99593 518 aa12.87□□□□□ -0.35
HMGA1-203ENST00000374116 SLC19A3Q9BZV2 496 aa12.87□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 53 ms