RNA–Protein interactions for RNA: ENST00000357409.9

VPS13A-202, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 9,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-202ENST00000357409 CLCF1Q9UBD9 225 aa6.73□□□□□ -1.33
VPS13A-202ENST00000357409 SC5DO75845 299 aa6.73□□□□□ -1.33
VPS13A-202ENST00000357409 PTHP01270 115 aa6.73□□□□□ -1.33
VPS13A-202ENST00000357409 BCKDHBP21953 392 aa6.73□□□□□ -1.33
VPS13A-202ENST00000357409 RAB35Q15286 201 aa6.73□□□□□ -1.33
VPS13A-202ENST00000357409 PRAMEF5Q5TYX0 476 aa6.73□□□□□ -1.33
VPS13A-202ENST00000357409 PRAMEF6Q5VXH4 476 aa6.73□□□□□ -1.33
VPS13A-202ENST00000357409 C11orf40Q8WZ69 217 aa6.73□□□□□ -1.33
VPS13A-202ENST00000357409 BMFQ96LC9 184 aa6.73□□□□□ -1.33
VPS13A-202ENST00000357409 ZNF582Q96NG8 517 aaPredicted RBP6.73□□□□□ -1.33
VPS13A-202ENST00000357409 WASH6PQ9NQA3 447 aa6.73□□□□□ -1.33
VPS13A-202ENST00000357409 PROCRQ9UNN8 238 aa6.73□□□□□ -1.33
VPS13A-202ENST00000357409 TRAPPC4Q9Y296 219 aa6.73□□□□□ -1.33
VPS13A-202ENST00000357409 DNPH1O43598 174 aa6.73□□□□□ -1.33
VPS13A-202ENST00000357409 RPS25P62851 125 aaKnown RBP6.73□□□□□ -1.33
VPS13A-202ENST00000357409 KIAA0141Q14154 515 aaPredicted RBP6.73□□□□□ -1.33
VPS13A-202ENST00000357409 BTLAQ7Z6A9 289 aa6.73□□□□□ -1.33
VPS13A-202ENST00000357409 PAPD5Q8NDF8 572 aaKnown RBP6.73□□□□□ -1.33
VPS13A-202ENST00000357409 APH1AQ96BI3 265 aa6.73□□□□□ -1.33
VPS13A-202ENST00000357409 ALG12Q9BV10 488 aa6.73□□□□□ -1.33
VPS13A-202ENST00000357409 HOXD1Q9GZZ0 328 aa6.73□□□□□ -1.33
VPS13A-202ENST00000357409 RPS10-NUDT3A0A1W2PQS6 291 aa6.73□□□□□ -1.33
VPS13A-202ENST00000357409 A0A1W2PR48 441 aa6.73□□□□□ -1.33
VPS13A-202ENST00000357409 MSTNO14793 375 aa6.73□□□□□ -1.33
VPS13A-202ENST00000357409 DNAJB5O75953 348 aa6.73□□□□□ -1.33
VPS13A-202ENST00000357409 MPZL1O95297 269 aa6.73□□□□□ -1.33
VPS13A-202ENST00000357409 RPS10P46783 165 aaKnown RBP6.73□□□□□ -1.33
VPS13A-202ENST00000357409 GALEQ14376 348 aa6.73□□□□□ -1.33
VPS13A-202ENST00000357409 POTEKPQ9BYX7 375 aa6.73□□□□□ -1.33
VPS13A-202ENST00000357409 MAF1Q9H063 256 aa6.73□□□□□ -1.33
VPS13A-202ENST00000357409 VRTNQ9H8Y1 702 aa6.73□□□□□ -1.33
VPS13A-202ENST00000357409 ZNF587BE7ETH6 402 aa6.73□□□□□ -1.33
VPS13A-202ENST00000357409 FGF17O60258 216 aa6.73□□□□□ -1.33
VPS13A-202ENST00000357409 PRB4P10163 310 aaPredicted RBP6.73□□□□□ -1.33
VPS13A-202ENST00000357409 FECHP22830 423 aa6.73□□□□□ -1.33
VPS13A-202ENST00000357409 ZNF140P52738 457 aaPredicted RBP6.73□□□□□ -1.33
VPS13A-202ENST00000357409 NAAAQ02083 359 aa6.73□□□□□ -1.33
VPS13A-202ENST00000357409 OTUD1Q5VV17 481 aaPredicted RBP6.73□□□□□ -1.33
VPS13A-202ENST00000357409 WBP2NLQ6ICG8 309 aa6.73□□□□□ -1.33
VPS13A-202ENST00000357409 ATF6BQ99941 703 aa6.73□□□□□ -1.33
VPS13A-202ENST00000357409 EMC3Q9P0I2 261 aa6.73□□□□□ -1.33
VPS13A-202ENST00000357409 IL7P13232 177 aa6.72□□□□□ -1.33
VPS13A-202ENST00000357409 FOLR1P15328 257 aa6.72□□□□□ -1.33
VPS13A-202ENST00000357409 HAAOP46952 286 aa6.72□□□□□ -1.33
VPS13A-202ENST00000357409 CTC1Q2NKJ3 1217 aa6.72□□□□□ -1.33
VPS13A-202ENST00000357409 TMEM182Q6ZP80 229 aaPredicted RBP6.72□□□□□ -1.33
VPS13A-202ENST00000357409 OR7G1Q8NGA0 311 aa6.72□□□□□ -1.33
VPS13A-202ENST00000357409 MRPS24Q96EL2 167 aaKnown RBP6.72□□□□□ -1.33
VPS13A-202ENST00000357409 TAS2R4Q9NYW5 299 aa6.72□□□□□ -1.33
VPS13A-202ENST00000357409 PCYT1BQ9Y5K3 369 aaPredicted RBP6.72□□□□□ -1.33
VPS13A-202ENST00000357409 AUP1Q9Y679 476 aa6.72□□□□□ -1.33
VPS13A-202ENST00000357409 TRAV39A0A0B4J263 110 aa6.72□□□□□ -1.33
VPS13A-202ENST00000357409 A0A1B0GTH9 108 aa6.72□□□□□ -1.33
VPS13A-202ENST00000357409 SPINT2O43291 252 aa6.72□□□□□ -1.33
VPS13A-202ENST00000357409 RPS4XP62701 263 aaKnown RBP6.72□□□□□ -1.33
VPS13A-202ENST00000357409 ELP4Q96EB1 424 aa6.72□□□□□ -1.33
VPS13A-202ENST00000357409 CNTNAP3BQ96NU0 1288 aa6.72□□□□□ -1.33
VPS13A-202ENST00000357409 ALKBH3Q96Q83 286 aaPredicted RBP6.72□□□□□ -1.33
VPS13A-202ENST00000357409 BARHL1Q9BZE3 327 aa6.72□□□□□ -1.33
VPS13A-202ENST00000357409 ENPP5Q9UJA9 477 aa6.72□□□□□ -1.33
VPS13A-202ENST00000357409 EMCNQ9ULC0 261 aa6.72□□□□□ -1.33
VPS13A-202ENST00000357409 ASB1Q9Y576 335 aa6.72□□□□□ -1.33
VPS13A-202ENST00000357409 A0A1B0GX78 115 aa6.72□□□□□ -1.33
VPS13A-202ENST00000357409 ZNF785A8K8V0 405 aa6.72□□□□□ -1.33
VPS13A-202ENST00000357409 ADAM23O75077 832 aa6.72□□□□□ -1.33
VPS13A-202ENST00000357409 MT-CO2P00403 227 aa6.72□□□□□ -1.33
VPS13A-202ENST00000357409 LAX1Q8IWV1 398 aa6.72□□□□□ -1.33
VPS13A-202ENST00000357409 MFSD9Q8NBP5 474 aa6.72□□□□□ -1.33
VPS13A-202ENST00000357409 SPNS1Q9H2V7 528 aa6.72□□□□□ -1.33
VPS13A-202ENST00000357409 BARX1Q9HBU1 254 aaPredicted RBP6.72□□□□□ -1.33
VPS13A-202ENST00000357409 TXNL4BQ9NX01 149 aaKnown RBP6.72□□□□□ -1.33
VPS13A-202ENST00000357409 IGHV5-51A0A0C4DH38 117 aa6.72□□□□□ -1.33
VPS13A-202ENST00000357409 hCG_1809904A0A1W2PP81 198 aa6.72□□□□□ -1.33
VPS13A-202ENST00000357409 A0A1W2PPE2 198 aa6.72□□□□□ -1.33
VPS13A-202ENST00000357409 KRBOX1C9JBD0 128 aa6.72□□□□□ -1.33
VPS13A-202ENST00000357409 RBP4P02753 201 aa6.72□□□□□ -1.33
VPS13A-202ENST00000357409 YPEL5P62699 121 aa6.72□□□□□ -1.33
VPS13A-202ENST00000357409 MISP3Q96FF7 219 aa6.72□□□□□ -1.33
VPS13A-202ENST00000357409 FLVCR2Q9UPI3 526 aa6.72□□□□□ -1.33
VPS13A-202ENST00000357409 KCNE3Q9Y6H6 103 aa6.72□□□□□ -1.33
VPS13A-202ENST00000357409 V9GYS6 101 aa6.72□□□□□ -1.33
VPS13A-202ENST00000357409 MRC1P22897 1456 aa6.72□□□□□ -1.33
VPS13A-202ENST00000357409 LOC285095A0A1B0GVY8 99 aa6.72□□□□□ -1.33
VPS13A-202ENST00000357409 HEXAP06865 529 aa6.72□□□□□ -1.33
VPS13A-202ENST00000357409 DTYMKP23919 212 aa6.72□□□□□ -1.33
VPS13A-202ENST00000357409 TRIP6Q15654 476 aaKnown RBP6.72□□□□□ -1.33
VPS13A-202ENST00000357409 THAP10Q9P2Z0 257 aaPredicted RBP6.72□□□□□ -1.33
VPS13A-202ENST00000357409 OR52A1Q9UKL2 312 aa6.72□□□□□ -1.33
VPS13A-202ENST00000357409 COL3A1P02461 1466 aaPredicted RBP6.72□□□□□ -1.33
VPS13A-202ENST00000357409 GABARAPH6UMI1 98 aa6.72□□□□□ -1.33
VPS13A-202ENST00000357409 DLL1O00548 723 aa6.72□□□□□ -1.33
VPS13A-202ENST00000357409 LYRM1O43325 122 aa6.72□□□□□ -1.33
VPS13A-202ENST00000357409 GMDSO60547 372 aa6.72□□□□□ -1.33
VPS13A-202ENST00000357409 GABARAPO95166 117 aa6.72□□□□□ -1.33
VPS13A-202ENST00000357409 OXSR1O95747 527 aaPredicted RBP6.72□□□□□ -1.33
VPS13A-202ENST00000357409 HLA-AP01891 365 aaKnown RBP6.72□□□□□ -1.33
VPS13A-202ENST00000357409 HMGA1P17096 107 aaKnown RBP6.72□□□□□ -1.33
VPS13A-202ENST00000357409 LAP3P28838 519 aa6.72□□□□□ -1.33
VPS13A-202ENST00000357409 SOX8P57073 446 aa6.72□□□□□ -1.33
VPS13A-202ENST00000357409 SYT6Q5T7P8 510 aaPredicted RBP6.72□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms