RNA–Protein interactions for RNA: ENST00000348544.4

VPS39-202, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS39, Length 2,661 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-202ENST00000348544 ST6GAL1P15907 406 aa6.16□□□□□ -1.42
VPS39-202ENST00000348544 AVPR2P30518 371 aa6.16□□□□□ -1.42
VPS39-202ENST00000348544 EMDP50402 254 aa6.16□□□□□ -1.42
VPS39-202ENST00000348544 PRKXP51817 358 aa6.16□□□□□ -1.42
VPS39-202ENST00000348544 PSMD4P55036 377 aaKnown RBP6.16□□□□□ -1.42
VPS39-202ENST00000348544 SCAND1P57086 179 aa6.16□□□□□ -1.42
VPS39-202ENST00000348544 TAS2R19P59542 299 aa6.16□□□□□ -1.42
VPS39-202ENST00000348544 BTN3A2P78410 334 aa6.16□□□□□ -1.42
VPS39-202ENST00000348544 PPP1R1AQ13522 171 aa6.16□□□□□ -1.42
VPS39-202ENST00000348544 TGIF1Q15583 401 aa6.16□□□□□ -1.42
VPS39-202ENST00000348544 ELAVL1Q15717 326 aaKnown RBP6.16□□□□□ -1.42
VPS39-202ENST00000348544 C2orf76Q3KRA6 126 aa6.16□□□□□ -1.42
VPS39-202ENST00000348544 EXOSC6Q5RKV6 272 aaKnown RBP6.16□□□□□ -1.42
VPS39-202ENST00000348544 ARHGAP40Q5TG30 622 aa6.16□□□□□ -1.42
VPS39-202ENST00000348544 PRAMEF17Q5VTA0 474 aa6.16□□□□□ -1.42
VPS39-202ENST00000348544 C9orf131Q5VYM1 1079 aa6.16□□□□□ -1.42
VPS39-202ENST00000348544 ASPHD2Q6ICH7 369 aa6.16□□□□□ -1.42
VPS39-202ENST00000348544 TMPPEQ6ZT21 453 aa6.16□□□□□ -1.42
VPS39-202ENST00000348544 RHOUQ7L0Q8 258 aa6.16□□□□□ -1.42
VPS39-202ENST00000348544 JAZF1Q86VZ6 243 aa6.16□□□□□ -1.42
VPS39-202ENST00000348544 BAP18Q8IXM2 172 aa6.16□□□□□ -1.42
VPS39-202ENST00000348544 ZNF595Q8IYB9 648 aa6.16□□□□□ -1.42
VPS39-202ENST00000348544 TMEM229BQ8NBD8 167 aa6.16□□□□□ -1.42
VPS39-202ENST00000348544 NUBPLQ8TB37 319 aa6.16□□□□□ -1.42
VPS39-202ENST00000348544 IRF7Q92985 503 aa6.16□□□□□ -1.42
VPS39-202ENST00000348544 ARRDC3Q96B67 414 aa6.16□□□□□ -1.42
VPS39-202ENST00000348544 MRPL38Q96DV4 380 aaKnown RBP6.16□□□□□ -1.42
VPS39-202ENST00000348544 ARL5BQ96KC2 179 aa6.16□□□□□ -1.42
VPS39-202ENST00000348544 LRFN5Q96NI6 719 aa6.16□□□□□ -1.42
VPS39-202ENST00000348544 GAL3ST1Q99999 423 aa6.16□□□□□ -1.42
VPS39-202ENST00000348544 CST11Q9H112 138 aa6.16□□□□□ -1.42
VPS39-202ENST00000348544 ADAP2Q9NPF8 381 aa6.16□□□□□ -1.42
VPS39-202ENST00000348544 RPH3AQ9Y2J0 694 aaPredicted RBP6.16□□□□□ -1.42
VPS39-202ENST00000348544 A0A0B4J2A0 478 aa6.15□□□□□ -1.42
VPS39-202ENST00000348544 TEX13DA0A0J9YY54 714 aaPredicted RBP6.15□□□□□ -1.42
VPS39-202ENST00000348544 C1orf196B1AJZ1 125 aa6.15□□□□□ -1.42
VPS39-202ENST00000348544 ZNF208O43345 1280 aa6.15□□□□□ -1.42
VPS39-202ENST00000348544 LATO43561 262 aa6.15□□□□□ -1.42
VPS39-202ENST00000348544 IGHV2-5P01817 119 aa6.15□□□□□ -1.42
VPS39-202ENST00000348544 CSN2P05814 226 aa6.15□□□□□ -1.42
VPS39-202ENST00000348544 FBP1P09467 338 aa6.15□□□□□ -1.42
VPS39-202ENST00000348544 SFTA3P0C7M3 94 aa6.15□□□□□ -1.42
VPS39-202ENST00000348544 OR8U8P0C7N1 319 aa6.15□□□□□ -1.42
VPS39-202ENST00000348544 RD3LP0DJH9 198 aa6.15□□□□□ -1.42
VPS39-202ENST00000348544 TPT1P13693 172 aaKnown RBP6.15□□□□□ -1.42
VPS39-202ENST00000348544 HLA-GP17693 338 aa6.15□□□□□ -1.42
VPS39-202ENST00000348544 RCC1P18754 421 aaPredicted RBP6.15□□□□□ -1.42
VPS39-202ENST00000348544 AGAP20933 346 aa6.15□□□□□ -1.42
VPS39-202ENST00000348544 DDX6P26196 483 aaKnown RBP eCLIP6.15□□□□□ -1.42
VPS39-202ENST00000348544 PAX6P26367 422 aa6.15□□□□□ -1.42
VPS39-202ENST00000348544 AQP2P41181 271 aa6.15□□□□□ -1.42
VPS39-202ENST00000348544 CCR2P41597 374 aa6.15□□□□□ -1.42
VPS39-202ENST00000348544 ACAA2P42765 397 aaKnown RBP6.15□□□□□ -1.42
VPS39-202ENST00000348544 FLT3LGP49771 235 aa6.15□□□□□ -1.42
VPS39-202ENST00000348544 ACTBP60709 375 aa6.15□□□□□ -1.42
VPS39-202ENST00000348544 ACTR1AP61163 376 aa6.15□□□□□ -1.42
VPS39-202ENST00000348544 ACTG1P63261 375 aa6.15□□□□□ -1.42
VPS39-202ENST00000348544 ID2Q02363 134 aa6.15□□□□□ -1.42
VPS39-202ENST00000348544 SSBP1Q04837 148 aaKnown RBP6.15□□□□□ -1.42
VPS39-202ENST00000348544 PRKCZQ05513 592 aa6.15□□□□□ -1.42
VPS39-202ENST00000348544 DPTQ07507 201 aa6.15□□□□□ -1.42
VPS39-202ENST00000348544 SCGB2B2Q4G0G5 96 aa6.15□□□□□ -1.42
VPS39-202ENST00000348544 ALG10BQ5I7T1 473 aa6.15□□□□□ -1.42
VPS39-202ENST00000348544 LY6G5CQ5SRR4 150 aa6.15□□□□□ -1.42
VPS39-202ENST00000348544 FHL5Q5TD97 284 aa6.15□□□□□ -1.42
VPS39-202ENST00000348544 IL34Q6ZMJ4 242 aa6.15□□□□□ -1.42
VPS39-202ENST00000348544 DBX2Q6ZNG2 339 aa6.15□□□□□ -1.42
VPS39-202ENST00000348544 ZNF765Q7L2R6 523 aa6.15□□□□□ -1.42
VPS39-202ENST00000348544 ANKRD33Q7Z3H0 272 aa6.15□□□□□ -1.42
VPS39-202ENST00000348544 LYG2Q86SG7 212 aa6.15□□□□□ -1.42
VPS39-202ENST00000348544 TMEM200AQ86VY9 491 aa6.15□□□□□ -1.42
VPS39-202ENST00000348544 PRSS35Q8N3Z0 413 aa6.15□□□□□ -1.42
VPS39-202ENST00000348544 INO80EQ8NBZ0 244 aaPredicted RBP6.15□□□□□ -1.42
VPS39-202ENST00000348544 RNF141Q8WVD5 230 aa6.15□□□□□ -1.42
VPS39-202ENST00000348544 FAM3DQ96BQ1 224 aa6.15□□□□□ -1.42
VPS39-202ENST00000348544 INSM2Q96T92 566 aaPredicted RBP6.15□□□□□ -1.42
VPS39-202ENST00000348544 ALG12Q9BV10 488 aa6.15□□□□□ -1.42
VPS39-202ENST00000348544 ATG5Q9H1Y0 275 aa6.15□□□□□ -1.42
VPS39-202ENST00000348544 RHOFQ9HBH0 211 aa6.15□□□□□ -1.42
VPS39-202ENST00000348544 PRMT8Q9NR22 394 aaPredicted RBP6.15□□□□□ -1.42
VPS39-202ENST00000348544 RXFP3Q9NSD7 469 aa6.15□□□□□ -1.42
VPS39-202ENST00000348544 METTL1Q9UBP6 276 aaKnown RBP6.15□□□□□ -1.42
VPS39-202ENST00000348544 SHPKQ9UHJ6 478 aa6.15□□□□□ -1.42
VPS39-202ENST00000348544 KLK13Q9UKR3 277 aa6.15□□□□□ -1.42
VPS39-202ENST00000348544 SCN2AQ99250 2005 aa6.15□□□□□ -1.42
VPS39-202ENST00000348544 MSGN1A6NI15 193 aa6.15□□□□□ -1.43
VPS39-202ENST00000348544 NUDT19A8MXV4 375 aa6.15□□□□□ -1.43
VPS39-202ENST00000348544 EEF1E1-BLOC1S5C9J1V9 151 aa6.15□□□□□ -1.43
VPS39-202ENST00000348544 FAM157AC9JC47 383 aa6.15□□□□□ -1.43
VPS39-202ENST00000348544 PRAMEF26H0Y7S4 382 aa6.15□□□□□ -1.43
VPS39-202ENST00000348544 GLCEO94923 617 aa6.15□□□□□ -1.43
VPS39-202ENST00000348544 IL2RAP01589 272 aa6.15□□□□□ -1.43
VPS39-202ENST00000348544 DCNP07585 359 aaKnown RBP6.15□□□□□ -1.43
VPS39-202ENST00000348544 SELPP16109 830 aa6.15□□□□□ -1.43
VPS39-202ENST00000348544 CFPP27918 469 aa6.15□□□□□ -1.43
VPS39-202ENST00000348544 PEBP1P30086 187 aaKnown RBP6.15□□□□□ -1.43
VPS39-202ENST00000348544 RPL4P36578 427 aaKnown RBP6.15□□□□□ -1.43
VPS39-202ENST00000348544 RPS27P42677 84 aaKnown RBP6.15□□□□□ -1.43
VPS39-202ENST00000348544 CDKN2AP42771 156 aaKnown RBP6.15□□□□□ -1.43
VPS39-202ENST00000348544 NKPD1Q17RQ9 610 aa6.15□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms