RNA–Protein interactions for RNA: ENST00000339997.8

RTN3-202, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 4,886 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-202ENST00000339997 CD3DP04234 171 aa8□□□□□ -1.13
RTN3-202ENST00000339997 HNF1AP20823 631 aa8□□□□□ -1.13
RTN3-202ENST00000339997 OPRM1P35372 400 aa8□□□□□ -1.13
RTN3-202ENST00000339997 EPHA5P54756 1037 aa8□□□□□ -1.13
RTN3-202ENST00000339997 ELLP55199 621 aaPredicted RBP8□□□□□ -1.13
RTN3-202ENST00000339997 RAB11AP62491 216 aa8□□□□□ -1.13
RTN3-202ENST00000339997 SNRPNP63162 240 aaKnown RBP8□□□□□ -1.13
RTN3-202ENST00000339997 CDKN3Q16667 212 aa8□□□□□ -1.13
RTN3-202ENST00000339997 XAF1Q6GPH4 301 aa8□□□□□ -1.13
RTN3-202ENST00000339997 MED25Q71SY5 747 aa8□□□□□ -1.13
RTN3-202ENST00000339997 TP53I13Q8NBR0 393 aaPredicted RBP8□□□□□ -1.13
RTN3-202ENST00000339997 OR5L1Q8NGL2 311 aa8□□□□□ -1.13
RTN3-202ENST00000339997 OR11A1Q9GZK7 315 aa8□□□□□ -1.13
RTN3-202ENST00000339997 NARFLQ9H6Q4 476 aa8□□□□□ -1.13
RTN3-202ENST00000339997 WDR76Q9H967 626 aa8□□□□□ -1.13
RTN3-202ENST00000339997 KLHL13Q9P2N7 655 aa8□□□□□ -1.13
RTN3-202ENST00000339997 FOCADQ5VW36 1801 aa8□□□□□ -1.13
RTN3-202ENST00000339997 DOCK10Q96BY6 2186 aa8□□□□□ -1.13
RTN3-202ENST00000339997 PPP1R2P9O14990 202 aa8□□□□□ -1.13
RTN3-202ENST00000339997 RPL13AP40429 203 aaKnown RBP8□□□□□ -1.13
RTN3-202ENST00000339997 GUCA2AQ02747 115 aa8□□□□□ -1.13
RTN3-202ENST00000339997 RSPO2Q6UXX9 243 aaPredicted RBP8□□□□□ -1.13
RTN3-202ENST00000339997 FAM219AQ8IW50 185 aa8□□□□□ -1.13
RTN3-202ENST00000339997 ZNF440Q8IYI8 595 aa8□□□□□ -1.13
RTN3-202ENST00000339997 CCDC71LQ8N9Z2 235 aa8□□□□□ -1.13
RTN3-202ENST00000339997 DDIT4LQ96D03 193 aa8□□□□□ -1.13
RTN3-202ENST00000339997 NEURL3Q96EH8 262 aa8□□□□□ -1.13
RTN3-202ENST00000339997 TXN2Q99757 166 aa8□□□□□ -1.13
RTN3-202ENST00000339997 SPACA1Q9HBV2 294 aa8□□□□□ -1.13
RTN3-202ENST00000339997 CPNE7Q9UBL6 633 aa8□□□□□ -1.13
RTN3-202ENST00000339997 SLC22A13Q9Y226 551 aa8□□□□□ -1.13
RTN3-202ENST00000339997 ROS1P08922 2347 aa7.99□□□□□ -1.13
RTN3-202ENST00000339997 SCN7AQ01118 1682 aa7.99□□□□□ -1.13
RTN3-202ENST00000339997 TMEM221A6NGB7 291 aa7.99□□□□□ -1.13
RTN3-202ENST00000339997 MSTNO14793 375 aa7.99□□□□□ -1.13
RTN3-202ENST00000339997 DUX1O43812 170 aa7.99□□□□□ -1.13
RTN3-202ENST00000339997 OR2T1O43869 369 aa7.99□□□□□ -1.13
RTN3-202ENST00000339997 HIST1H1CP16403 213 aaKnown RBP7.99□□□□□ -1.13
RTN3-202ENST00000339997 IRS1P35568 1242 aa7.99□□□□□ -1.13
RTN3-202ENST00000339997 ASCL1P50553 236 aa7.99□□□□□ -1.13
RTN3-202ENST00000339997 ACKR1Q16570 336 aa7.99□□□□□ -1.13
RTN3-202ENST00000339997 PLAC9Q5JTB6 97 aa7.99□□□□□ -1.13
RTN3-202ENST00000339997 OR8G2PQ6IF36 304 aa7.99□□□□□ -1.13
RTN3-202ENST00000339997 BPHLQ86WA6 291 aaPredicted RBP7.99□□□□□ -1.13
RTN3-202ENST00000339997 CMTM4Q8IZR5 234 aa7.99□□□□□ -1.13
RTN3-202ENST00000339997 OR51H1Q8NH63 302 aa7.99□□□□□ -1.13
RTN3-202ENST00000339997 YIPF5Q969M3 257 aa7.99□□□□□ -1.13
RTN3-202ENST00000339997 MS4A8Q9BY19 250 aa7.99□□□□□ -1.13
RTN3-202ENST00000339997 UBQLN4Q9NRR5 601 aa7.99□□□□□ -1.13
RTN3-202ENST00000339997 FAM212BQ9NTI7 297 aaPredicted RBP7.99□□□□□ -1.13
RTN3-202ENST00000339997 ACSS1Q9NUB1 689 aaPredicted RBP7.99□□□□□ -1.13
RTN3-202ENST00000339997 FBXO4Q9UKT5 387 aa7.99□□□□□ -1.13
RTN3-202ENST00000339997 MRPS28Q9Y2Q9 187 aaKnown RBP7.99□□□□□ -1.13
RTN3-202ENST00000339997 ARGFXA6NJG6 315 aa7.99□□□□□ -1.13
RTN3-202ENST00000339997 ZNF264O43296 627 aa7.99□□□□□ -1.13
RTN3-202ENST00000339997 ALOX5APP20292 161 aa7.99□□□□□ -1.13
RTN3-202ENST00000339997 PTAFRP25105 342 aa7.99□□□□□ -1.13
RTN3-202ENST00000339997 ZNF93P35789 620 aaPredicted RBP7.99□□□□□ -1.13
RTN3-202ENST00000339997 BCL6P41182 706 aa7.99□□□□□ -1.13
RTN3-202ENST00000339997 CSNK1A1P48729 337 aa7.99□□□□□ -1.13
RTN3-202ENST00000339997 TAS2R31P59538 309 aa7.99□□□□□ -1.13
RTN3-202ENST00000339997 ASAH1Q13510 395 aa7.99□□□□□ -1.13
RTN3-202ENST00000339997 ALKAL1Q6UXT8 129 aa7.99□□□□□ -1.13
RTN3-202ENST00000339997 PTOV1Q86YD1 416 aa7.99□□□□□ -1.13
RTN3-202ENST00000339997 SKA3Q8IX90 412 aa7.99□□□□□ -1.13
RTN3-202ENST00000339997 ISL2Q96A47 359 aa7.99□□□□□ -1.13
RTN3-202ENST00000339997 SGK3Q96BR1 496 aa7.99□□□□□ -1.13
RTN3-202ENST00000339997 ZNF385DQ9H6B1 395 aa7.99□□□□□ -1.13
RTN3-202ENST00000339997 CSAG2Q9Y5P2 127 aa7.99□□□□□ -1.13
RTN3-202ENST00000339997 TAF1LQ8IZX4 1826 aa7.99□□□□□ -1.13
RTN3-202ENST00000339997 COL14A1Q05707 1796 aaKnown RBP7.99□□□□□ -1.13
RTN3-202ENST00000339997 TEX51A0A1B0GUA7 166 aa7.99□□□□□ -1.13
RTN3-202ENST00000339997 HMGN4O00479 90 aa7.99□□□□□ -1.13
RTN3-202ENST00000339997 CNR1P21554 472 aa7.99□□□□□ -1.13
RTN3-202ENST00000339997 HNRNPA2B1P22626 353 aaKnown RBP7.99□□□□□ -1.13
RTN3-202ENST00000339997 PKLRP30613 574 aa7.99□□□□□ -1.13
RTN3-202ENST00000339997 EVX1P49640 407 aa7.99□□□□□ -1.13
RTN3-202ENST00000339997 BIDP55957 195 aa7.99□□□□□ -1.13
RTN3-202ENST00000339997 DCXRQ7Z4W1 244 aa7.99□□□□□ -1.13
RTN3-202ENST00000339997 RIMKLAQ8IXN7 391 aa7.99□□□□□ -1.13
RTN3-202ENST00000339997 FAM160A2Q8N612 972 aaPredicted RBP7.99□□□□□ -1.13
RTN3-202ENST00000339997 OR5K2Q8NHB8 316 aa7.99□□□□□ -1.13
RTN3-202ENST00000339997 SCARB1Q8WTV0 552 aa7.99□□□□□ -1.13
RTN3-202ENST00000339997 CHTF18Q8WVB6 975 aa7.99□□□□□ -1.13
RTN3-202ENST00000339997 SPTSSAQ969W0 71 aa7.99□□□□□ -1.13
RTN3-202ENST00000339997 ARRDC3Q96B67 414 aa7.99□□□□□ -1.13
RTN3-202ENST00000339997 KCTD12Q96CX2 325 aaKnown RBP7.99□□□□□ -1.13
RTN3-202ENST00000339997 UQCC2Q9BRT2 126 aa7.99□□□□□ -1.13
RTN3-202ENST00000339997 TPPP3Q9BW30 176 aa7.99□□□□□ -1.13
RTN3-202ENST00000339997 PLA2G12AQ9BZM1 189 aa7.99□□□□□ -1.13
RTN3-202ENST00000339997 EMC7Q9NPA0 242 aa7.99□□□□□ -1.13
RTN3-202ENST00000339997 M0R082 166 aa7.98□□□□□ -1.13
RTN3-202ENST00000339997 P2RX6O15547 441 aa7.98□□□□□ -1.13
RTN3-202ENST00000339997 XRCC2O43543 280 aa7.98□□□□□ -1.13
RTN3-202ENST00000339997 GPRIN2O60269 458 aa7.98□□□□□ -1.13
RTN3-202ENST00000339997 P04436 131 aa7.98□□□□□ -1.13
RTN3-202ENST00000339997 LPLP06858 475 aa7.98□□□□□ -1.13
RTN3-202ENST00000339997 AVPR2P30518 371 aa7.98□□□□□ -1.13
RTN3-202ENST00000339997 RPL23AP62750 156 aaKnown RBP7.98□□□□□ -1.13
RTN3-202ENST00000339997 PMPCAQ10713 525 aa7.98□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms