RNA–Protein interactions for RNA: ENST00000336798.11

SDC3-201, Transcript of syndecan 3, humanhuman

TSL 1 (best) BASIC

Gene SDC3, Length 6,392 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-201ENST00000336798 OR10X1Q8NGY0 326 aa11.63□□□□□ -0.55
SDC3-201ENST00000336798 SEMA6CQ9H3T2 930 aa11.63□□□□□ -0.55
SDC3-201ENST00000336798 EMC7Q9NPA0 242 aa11.63□□□□□ -0.55
SDC3-201ENST00000336798 PHRF1Q9P1Y6 1649 aaKnown RBP11.62□□□□□ -0.55
SDC3-201ENST00000336798 RAB40ALP0C0E4 278 aa11.62□□□□□ -0.55
SDC3-201ENST00000336798 ATXN1LP0C7T5 689 aaKnown RBP11.62□□□□□ -0.55
SDC3-201ENST00000336798 POLR2IP36954 125 aaKnown RBP11.62□□□□□ -0.55
SDC3-201ENST00000336798 MMP12P39900 470 aa11.62□□□□□ -0.55
SDC3-201ENST00000336798 CATSPERDQ86XM0 798 aa11.62□□□□□ -0.55
SDC3-201ENST00000336798 SKA3Q8IX90 412 aa11.62□□□□□ -0.55
SDC3-201ENST00000336798 GCNT2Q8N0V5 402 aa11.62□□□□□ -0.55
SDC3-201ENST00000336798 OR1N1Q8NGS0 311 aa11.62□□□□□ -0.55
SDC3-201ENST00000336798 RAB40AQ8WXH6 277 aa11.62□□□□□ -0.55
SDC3-201ENST00000336798 PDXPQ96GD0 296 aa11.62□□□□□ -0.55
SDC3-201ENST00000336798 POFUT1Q9H488 388 aa11.62□□□□□ -0.55
SDC3-201ENST00000336798 COL14A1Q05707 1796 aaKnown RBP11.62□□□□□ -0.55
SDC3-201ENST00000336798 SRP9P49458 86 aaKnown RBP11.62□□□□□ -0.55
SDC3-201ENST00000336798 PARM1Q6UWI2 310 aa11.62□□□□□ -0.55
SDC3-201ENST00000336798 GAREM2Q75VX8 874 aa11.62□□□□□ -0.55
SDC3-201ENST00000336798 UCN3Q969E3 161 aa11.62□□□□□ -0.55
SDC3-201ENST00000336798 C8orf44Q96CB5 159 aa11.62□□□□□ -0.55
SDC3-201ENST00000336798 BOD1Q96IK1 185 aa11.62□□□□□ -0.55
SDC3-201ENST00000336798 PRAMEF25A6NGN4 478 aa11.62□□□□□ -0.55
SDC3-201ENST00000336798 AQP7P3A6NL99 342 aa11.62□□□□□ -0.55
SDC3-201ENST00000336798 SIRPB1O00241 398 aa11.62□□□□□ -0.55
SDC3-201ENST00000336798 MAGEB4O15481 346 aaPredicted RBP11.62□□□□□ -0.55
SDC3-201ENST00000336798 FAM157BP0CG42 384 aa11.62□□□□□ -0.55
SDC3-201ENST00000336798 FOXK2Q01167 660 aa11.62□□□□□ -0.55
SDC3-201ENST00000336798 PMPCAQ10713 525 aa11.62□□□□□ -0.55
SDC3-201ENST00000336798 EXOSC2Q13868 293 aaKnown RBP11.62□□□□□ -0.55
SDC3-201ENST00000336798 OPCMLQ14982 345 aa11.62□□□□□ -0.55
SDC3-201ENST00000336798 RBMS3Q6XE24 437 aaKnown RBP11.62□□□□□ -0.55
SDC3-201ENST00000336798 DBX2Q6ZNG2 339 aa11.62□□□□□ -0.55
SDC3-201ENST00000336798 ARRDC2Q8TBH0 407 aa11.62□□□□□ -0.55
SDC3-201ENST00000336798 APH1AQ96BI3 265 aa11.62□□□□□ -0.55
SDC3-201ENST00000336798 RNF170Q96K19 258 aa11.62□□□□□ -0.55
SDC3-201ENST00000336798 RNF150Q9ULK6 438 aa11.62□□□□□ -0.55
SDC3-201ENST00000336798 A0A1W2PPH5 198 aa11.62□□□□□ -0.55
SDC3-201ENST00000336798 ALOX12BO75342 701 aa11.62□□□□□ -0.55
SDC3-201ENST00000336798 GIPRP48546 466 aa11.62□□□□□ -0.55
SDC3-201ENST00000336798 SOWAHCQ53LP3 525 aaPredicted RBP11.62□□□□□ -0.55
SDC3-201ENST00000336798 GDF7Q7Z4P5 450 aa11.62□□□□□ -0.55
SDC3-201ENST00000336798 NECAP1Q8NC96 275 aa11.62□□□□□ -0.55
SDC3-201ENST00000336798 TRMT61AQ96FX7 289 aaKnown RBP11.62□□□□□ -0.55
SDC3-201ENST00000336798 ATOH8Q96SQ7 321 aa11.62□□□□□ -0.55
SDC3-201ENST00000336798 GLIPR2Q9H4G4 154 aa11.62□□□□□ -0.55
SDC3-201ENST00000336798 SEMA4GQ9NTN9 838 aa11.62□□□□□ -0.55
SDC3-201ENST00000336798 OR52A1Q9UKL2 312 aa11.62□□□□□ -0.55
SDC3-201ENST00000336798 C20orf202A1L168 122 aa11.62□□□□□ -0.55
SDC3-201ENST00000336798 ELAVL4P26378 380 aaKnown RBP11.62□□□□□ -0.55
SDC3-201ENST00000336798 DEFB109BQ30KR1 87 aa11.62□□□□□ -0.55
SDC3-201ENST00000336798 THNSL2Q86YJ6 484 aa11.62□□□□□ -0.55
SDC3-201ENST00000336798 MISPQ8IVT2 679 aa11.62□□□□□ -0.55
SDC3-201ENST00000336798 OR8U1Q8NH10 309 aa11.62□□□□□ -0.55
SDC3-201ENST00000336798 BARHL1Q9BZE3 327 aa11.62□□□□□ -0.55
SDC3-201ENST00000336798 P2RY12Q9H244 342 aa11.62□□□□□ -0.55
SDC3-201ENST00000336798 CRLF2Q9HC73 371 aa11.62□□□□□ -0.55
SDC3-201ENST00000336798 NTNG1Q9Y2I2 539 aa11.62□□□□□ -0.55
SDC3-201ENST00000336798 ADAM10O14672 748 aa11.61□□□□□ -0.55
SDC3-201ENST00000336798 TO15178 435 aa11.61□□□□□ -0.55
SDC3-201ENST00000336798 CSO75390 466 aaKnown RBP11.61□□□□□ -0.55
SDC3-201ENST00000336798 RAB13P51153 203 aa11.61□□□□□ -0.55
SDC3-201ENST00000336798 H2BFWTQ7Z2G1 175 aa11.61□□□□□ -0.55
SDC3-201ENST00000336798 LACC1Q8IV20 430 aa11.61□□□□□ -0.55
SDC3-201ENST00000336798 AKR7LQ8NHP1 331 aa11.61□□□□□ -0.55
SDC3-201ENST00000336798 ST8SIA4Q92187 359 aa11.61□□□□□ -0.55
SDC3-201ENST00000336798 TAS2R5Q9NYW4 299 aa11.61□□□□□ -0.55
SDC3-201ENST00000336798 CNOT2Q9NZN8 540 aaKnown RBP11.61□□□□□ -0.55
SDC3-201ENST00000336798 A0A1B0GTW7 788 aa11.61□□□□□ -0.55
SDC3-201ENST00000336798 KRBOX1C9JBD0 128 aa11.61□□□□□ -0.55
SDC3-201ENST00000336798 YPEL5P62699 121 aa11.61□□□□□ -0.55
SDC3-201ENST00000336798 PDZD11Q5EBL8 140 aa11.61□□□□□ -0.55
SDC3-201ENST00000336798 TM4SF18Q96CE8 201 aa11.61□□□□□ -0.55
SDC3-201ENST00000336798 FAM103A1Q9BTL3 118 aaKnown RBP11.61□□□□□ -0.55
SDC3-201ENST00000336798 OR11A1Q9GZK7 315 aa11.61□□□□□ -0.55
SDC3-201ENST00000336798 FAM212BQ9NTI7 297 aaPredicted RBP11.61□□□□□ -0.55
SDC3-201ENST00000336798 NECAP2Q9NVZ3 263 aa11.61□□□□□ -0.55
SDC3-201ENST00000336798 B3GAT1Q9P2W7 334 aa11.61□□□□□ -0.55
SDC3-201ENST00000336798 KCND3Q9UK17 655 aa11.61□□□□□ -0.55
SDC3-201ENST00000336798 GAB2Q9UQC2 676 aa11.61□□□□□ -0.55
SDC3-201ENST00000336798 K7ESM1 405 aa11.61□□□□□ -0.55
SDC3-201ENST00000336798 CPT2P23786 658 aa11.61□□□□□ -0.55
SDC3-201ENST00000336798 SFXN4Q6P4A7 337 aa11.61□□□□□ -0.55
SDC3-201ENST00000336798 WDR5BQ86VZ2 330 aa11.61□□□□□ -0.55
SDC3-201ENST00000336798 FAM58AQ8N1B3 248 aa11.61□□□□□ -0.55
SDC3-201ENST00000336798 SLC39A13Q96H72 371 aa11.61□□□□□ -0.55
SDC3-201ENST00000336798 FAM117AQ9C073 453 aa11.61□□□□□ -0.55
SDC3-201ENST00000336798 CXCL16Q9H2A7 254 aa11.61□□□□□ -0.55
SDC3-201ENST00000336798 MBNL1Q9NR56 388 aaKnown RBP11.61□□□□□ -0.55
SDC3-201ENST00000336798 V9GYS6 101 aa11.61□□□□□ -0.55
SDC3-201ENST00000336798 SHPRHQ149N8 1683 aa11.61□□□□□ -0.55
SDC3-201ENST00000336798 ALKBH1Q13686 389 aaKnown RBP11.61□□□□□ -0.55
SDC3-201ENST00000336798 DMRTC1Q5HYR2 192 aa11.61□□□□□ -0.55
SDC3-201ENST00000336798 C6orf15Q6UXA7 325 aaPredicted RBP11.61□□□□□ -0.55
SDC3-201ENST00000336798 C15orf54Q8N8G6 183 aa11.61□□□□□ -0.55
SDC3-201ENST00000336798 ZFPM2Q8WW38 1151 aa11.61□□□□□ -0.55
SDC3-201ENST00000336798 NARFLQ9H6Q4 476 aa11.61□□□□□ -0.55
SDC3-201ENST00000336798 BARX1Q9HBU1 254 aaPredicted RBP11.61□□□□□ -0.55
SDC3-201ENST00000336798 NPFFR2Q9Y5X5 522 aa11.61□□□□□ -0.55
SDC3-201ENST00000336798 OLFM2O95897 454 aa11.61□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms