RNA–Protein interactions for RNA: ENST00000308271.13

USP48-201, Transcript of ubiquitin specific peptidase 48, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP48, Length 4,595 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-201ENST00000308271 CMTM1Q8IZ96 169 aa17.7■□□□□ 0.42
USP48-201ENST00000308271 BORCS8Q96FH0 119 aa17.7■□□□□ 0.42
USP48-201ENST00000308271 SENP5Q96HI0 755 aaPredicted RBP17.7■□□□□ 0.42
USP48-201ENST00000308271 HHIPL1Q96JK4 782 aa17.7■□□□□ 0.42
USP48-201ENST00000308271 C1orf198Q9H425 327 aa17.7■□□□□ 0.42
USP48-201ENST00000308271 MRPS28Q9Y2Q9 187 aaKnown RBP17.7■□□□□ 0.42
USP48-201ENST00000308271 URB1O60287 2271 aaKnown RBP17.7■□□□□ 0.42
USP48-201ENST00000308271 HSPB2A8KAH6 182 aa17.69■□□□□ 0.42
USP48-201ENST00000308271 BCL2L11O43521 198 aa17.69■□□□□ 0.42
USP48-201ENST00000308271 NUDT21O43809 227 aaKnown RBP17.69■□□□□ 0.42
USP48-201ENST00000308271 POU3F1Q03052 451 aaPredicted RBP17.69■□□□□ 0.42
USP48-201ENST00000308271 HSPB2Q16082 182 aa17.69■□□□□ 0.42
USP48-201ENST00000308271 LAIR2Q6ISS4 152 aa17.69■□□□□ 0.42
USP48-201ENST00000308271 OR10A5Q9H207 317 aa17.69■□□□□ 0.42
USP48-201ENST00000308271 WASF3Q9UPY6 502 aa17.69■□□□□ 0.42
USP48-201ENST00000308271 TCRBV21S2A2A0A5A6 115 aa17.69■□□□□ 0.42
USP48-201ENST00000308271 F5H5K5 113 aa17.69■□□□□ 0.42
USP48-201ENST00000308271 SHOXO15266 292 aa17.69■□□□□ 0.42
USP48-201ENST00000308271 YY2O15391 372 aa17.69■□□□□ 0.42
USP48-201ENST00000308271 MVDP53602 400 aa17.69■□□□□ 0.42
USP48-201ENST00000308271 TMEM88Q6PEY1 159 aa17.69■□□□□ 0.42
USP48-201ENST00000308271 BEND4Q6ZU67 534 aa17.69■□□□□ 0.42
USP48-201ENST00000308271 ADIPOR2Q86V24 386 aa17.69■□□□□ 0.42
USP48-201ENST00000308271 CHAC2Q8WUX2 184 aa17.69■□□□□ 0.42
USP48-201ENST00000308271 SLC22A11Q9NSA0 550 aa17.69■□□□□ 0.42
USP48-201ENST00000308271 PTPRZ1P23471 2315 aaPredicted RBP17.69■□□□□ 0.42
USP48-201ENST00000308271 TAAR5O14804 337 aa17.69■□□□□ 0.42
USP48-201ENST00000308271 ACHEP22303 614 aa17.69■□□□□ 0.42
USP48-201ENST00000308271 CPT2P23786 658 aa17.69■□□□□ 0.42
USP48-201ENST00000308271 THBS2P35442 1172 aa17.69■□□□□ 0.42
USP48-201ENST00000308271 LYPD8Q6UX82 237 aa17.69■□□□□ 0.42
USP48-201ENST00000308271 OR2L13Q8N349 312 aa17.69■□□□□ 0.42
USP48-201ENST00000308271 SLC30A7Q8NEW0 376 aa17.69■□□□□ 0.42
USP48-201ENST00000308271 TERB2Q8NHR7 220 aa17.69■□□□□ 0.42
USP48-201ENST00000308271 SLC22A8Q8TCC7 542 aa17.69■□□□□ 0.42
USP48-201ENST00000308271 TAF9BQ9HBM6 251 aa17.69■□□□□ 0.42
USP48-201ENST00000308271 ANKRD61A6NGH8 418 aa17.69■□□□□ 0.42
USP48-201ENST00000308271 MAP2K6P52564 334 aa17.69■□□□□ 0.42
USP48-201ENST00000308271 DLX2Q07687 328 aaPredicted RBP17.69■□□□□ 0.42
USP48-201ENST00000308271 ADAM5Q6NVV9 412 aa17.69■□□□□ 0.42
USP48-201ENST00000308271 CREBZFQ9NS37 354 aa17.69■□□□□ 0.42
USP48-201ENST00000308271 A0A0A6YYD5 115 aa17.68■□□□□ 0.42
USP48-201ENST00000308271 GABRR1P24046 479 aa17.68■□□□□ 0.42
USP48-201ENST00000308271 MANEAQ5SRI9 462 aa17.68■□□□□ 0.42
USP48-201ENST00000308271 HSD17B13Q7Z5P4 300 aaPredicted RBP17.68■□□□□ 0.42
USP48-201ENST00000308271 VN1R2Q8NFZ6 395 aa17.68■□□□□ 0.42
USP48-201ENST00000308271 RNF32Q9H0A6 362 aa17.68■□□□□ 0.42
USP48-201ENST00000308271 OR52A1Q9UKL2 312 aa17.68■□□□□ 0.42
USP48-201ENST00000308271 ZNF175Q9Y473 711 aa17.68■□□□□ 0.42
USP48-201ENST00000308271 FFAR1O14842 300 aa17.68■□□□□ 0.42
USP48-201ENST00000308271 PMP2P02689 132 aa17.68■□□□□ 0.42
USP48-201ENST00000308271 FIP1L1Q6UN15 594 aaKnown RBP17.68■□□□□ 0.42
USP48-201ENST00000308271 CD300LGQ6UXG3 332 aa17.68■□□□□ 0.42
USP48-201ENST00000308271 USP53Q70EK8 1073 aa17.68■□□□□ 0.42
USP48-201ENST00000308271 LILRB2Q8N423 598 aa17.68■□□□□ 0.42
USP48-201ENST00000308271 KIR3DX1Q9H7L2 352 aa17.68■□□□□ 0.42
USP48-201ENST00000308271 MCCC2Q9HCC0 563 aa17.68■□□□□ 0.42
USP48-201ENST00000308271 TRIM77I1YAP6 450 aa17.68■□□□□ 0.42
USP48-201ENST00000308271 ZNF93P35789 620 aaPredicted RBP17.68■□□□□ 0.42
USP48-201ENST00000308271 EMC4Q5J8M3 183 aa17.68■□□□□ 0.42
USP48-201ENST00000308271 FBXW12Q6X9E4 464 aa17.68■□□□□ 0.42
USP48-201ENST00000308271 VDAC3Q9Y277 283 aa17.68■□□□□ 0.42
USP48-201ENST00000308271 THEGLP0DJG4 465 aa17.67■□□□□ 0.42
USP48-201ENST00000308271 SERPINA2P20848 420 aa17.67■□□□□ 0.42
USP48-201ENST00000308271 SDHAP31040 664 aa17.67■□□□□ 0.42
USP48-201ENST00000308271 PCBP4P57723 403 aaKnown RBP17.67■□□□□ 0.42
USP48-201ENST00000308271 C2orf76Q3KRA6 126 aa17.67■□□□□ 0.42
USP48-201ENST00000308271 COMTD1Q86VU5 262 aa17.67■□□□□ 0.42
USP48-201ENST00000308271 LHFPL5Q8TAF8 219 aa17.67■□□□□ 0.42
USP48-201ENST00000308271 PTDSS2Q9BVG9 487 aa17.67■□□□□ 0.42
USP48-201ENST00000308271 NMNAT2Q9BZQ4 307 aa17.67■□□□□ 0.42
USP48-201ENST00000308271 CPED1A4D0V7 1026 aa17.67■□□□□ 0.42
USP48-201ENST00000308271 P2RY10O00398 339 aa17.67■□□□□ 0.42
USP48-201ENST00000308271 SEMA4FO95754 770 aa17.67■□□□□ 0.42
USP48-201ENST00000308271 SULT1A3P0DMM9 295 aa17.67■□□□□ 0.42
USP48-201ENST00000308271 SULT1A4P0DMN0 295 aa17.67■□□□□ 0.42
USP48-201ENST00000308271 TMPRSS11FQ6ZWK6 438 aa17.67■□□□□ 0.42
USP48-201ENST00000308271 OR1J2Q8NGS2 313 aa17.67■□□□□ 0.42
USP48-201ENST00000308271 FAM213BQ8TBF2 198 aa17.67■□□□□ 0.42
USP48-201ENST00000308271 NELFAQ9H3P2 528 aa17.67■□□□□ 0.42
USP48-201ENST00000308271 GDE1Q9NZC3 331 aa17.67■□□□□ 0.42
USP48-201ENST00000308271 VSX1Q9NZR4 365 aaPredicted RBP17.67■□□□□ 0.42
USP48-201ENST00000308271 HMSDA8MTL9 139 aa17.67■□□□□ 0.42
USP48-201ENST00000308271 MCRIP1C9JLW8 97 aa17.67■□□□□ 0.42
USP48-201ENST00000308271 CD79BP40259 229 aa17.67■□□□□ 0.42
USP48-201ENST00000308271 POLR2HP52434 150 aaKnown RBP17.67■□□□□ 0.42
USP48-201ENST00000308271 EIF4EBP2Q13542 120 aaPredicted RBP17.67■□□□□ 0.42
USP48-201ENST00000308271 ERV3-1Q14264 604 aa17.67■□□□□ 0.42
USP48-201ENST00000308271 Q6ZSR6 202 aa17.67■□□□□ 0.42
USP48-201ENST00000308271 MED25Q71SY5 747 aa17.67■□□□□ 0.42
USP48-201ENST00000308271 OR52H1Q8NGJ2 320 aa17.67■□□□□ 0.42
USP48-201ENST00000308271 FGGYQ96C11 551 aa17.67■□□□□ 0.42
USP48-201ENST00000308271 LPAR4Q99677 370 aa17.67■□□□□ 0.42
USP48-201ENST00000308271 SSX3Q99909 188 aa17.67■□□□□ 0.42
USP48-201ENST00000308271 PPP1R3EQ9H7J1 279 aa17.67■□□□□ 0.42
USP48-201ENST00000308271 KCNS2Q9ULS6 477 aa17.67■□□□□ 0.42
USP48-201ENST00000308271 COL5A3P25940 1745 aaPredicted RBP17.67■□□□□ 0.42
USP48-201ENST00000308271 SHANK3Q9BYB0 1731 aa17.67■□□□□ 0.42
USP48-201ENST00000308271 SUSD5O60279 629 aa17.67■□□□□ 0.42
USP48-201ENST00000308271 CXCL3P19876 107 aa17.67■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms