RNA–Protein interactions for RNA: ENST00000299138.11

VPS35-201, Transcript of VPS35, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS35, Length 6,790 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-201ENST00000299138 LPPQ93052 612 aa5.91□□□□□ -1.46
VPS35-201ENST00000299138 PGAM5Q96HS1 289 aa5.91□□□□□ -1.46
VPS35-201ENST00000299138 DMRTA2Q96SC8 542 aa5.91□□□□□ -1.46
VPS35-201ENST00000299138 TEX101Q9BY14 249 aa5.91□□□□□ -1.46
VPS35-201ENST00000299138 OR2J1Q9GZK6 312 aa5.91□□□□□ -1.46
VPS35-201ENST00000299138 FAM234AQ9H0X4 552 aa5.91□□□□□ -1.46
VPS35-201ENST00000299138 SRA1Q9HD15 236 aaKnown RBP5.91□□□□□ -1.46
VPS35-201ENST00000299138 NRIP3Q9NQ35 241 aa5.91□□□□□ -1.46
VPS35-201ENST00000299138 A0A087X0M5 115 aa5.91□□□□□ -1.46
VPS35-201ENST00000299138 A0A1B0GX30 115 aa5.91□□□□□ -1.46
VPS35-201ENST00000299138 PDGFBP01127 241 aaPredicted RBP5.91□□□□□ -1.46
VPS35-201ENST00000299138 GBAP04062 536 aa5.91□□□□□ -1.46
VPS35-201ENST00000299138 MELTFP08582 738 aa5.91□□□□□ -1.46
VPS35-201ENST00000299138 BCKDHBP21953 392 aa5.91□□□□□ -1.46
VPS35-201ENST00000299138 GCH1P30793 250 aa5.91□□□□□ -1.46
VPS35-201ENST00000299138 GCGRP47871 477 aa5.91□□□□□ -1.46
VPS35-201ENST00000299138 PREPP48147 710 aa5.91□□□□□ -1.46
VPS35-201ENST00000299138 CLDN6P56747 220 aa5.91□□□□□ -1.46
VPS35-201ENST00000299138 LCN6P62502 163 aa5.91□□□□□ -1.46
VPS35-201ENST00000299138 H3F3AP84243 136 aa5.91□□□□□ -1.46
VPS35-201ENST00000299138 PLGLB1Q02325 96 aa5.91□□□□□ -1.46
VPS35-201ENST00000299138 FABP9Q0Z7S8 132 aa5.91□□□□□ -1.46
VPS35-201ENST00000299138 MLF2Q15773 248 aaPredicted RBP5.91□□□□□ -1.46
VPS35-201ENST00000299138 PLBD1Q6P4A8 553 aa5.91□□□□□ -1.46
VPS35-201ENST00000299138 OR9Q2Q8NGE9 314 aa5.91□□□□□ -1.46
VPS35-201ENST00000299138 HOXB13Q92826 284 aaPredicted RBP5.91□□□□□ -1.46
VPS35-201ENST00000299138 HLA-CQ95604 372 aa5.91□□□□□ -1.46
VPS35-201ENST00000299138 PNPLA2Q96AD5 504 aa5.91□□□□□ -1.46
VPS35-201ENST00000299138 MIXL1Q9H2W2 232 aa5.91□□□□□ -1.46
VPS35-201ENST00000299138 SDHAF3Q9NRP4 125 aa5.91□□□□□ -1.46
VPS35-201ENST00000299138 NEUROG3Q9Y4Z2 214 aa5.91□□□□□ -1.46
VPS35-201ENST00000299138 A0A1W2PNV4 684 aa5.91□□□□□ -1.46
VPS35-201ENST00000299138 TRABD2BA6NFA1 517 aa5.91□□□□□ -1.46
VPS35-201ENST00000299138 GNRH1P01148 92 aa5.91□□□□□ -1.46
VPS35-201ENST00000299138 OR5H8P0DN80 308 aa5.91□□□□□ -1.46
VPS35-201ENST00000299138 RPA2P15927 270 aa5.91□□□□□ -1.46
VPS35-201ENST00000299138 NAGAP17050 411 aa5.91□□□□□ -1.46
VPS35-201ENST00000299138 F2RP25116 425 aa5.91□□□□□ -1.46
VPS35-201ENST00000299138 OTX2P32243 289 aa5.91□□□□□ -1.46
VPS35-201ENST00000299138 PSMB3P49720 205 aa5.91□□□□□ -1.46
VPS35-201ENST00000299138 GAB1Q13480 694 aa5.91□□□□□ -1.46
VPS35-201ENST00000299138 SMAD4Q13485 552 aaKnown RBP5.91□□□□□ -1.46
VPS35-201ENST00000299138 C9orf152Q5JTZ5 239 aa5.91□□□□□ -1.46
VPS35-201ENST00000299138 ABLIM2Q6H8Q1 611 aa5.91□□□□□ -1.46
VPS35-201ENST00000299138 NADSYN1Q6IA69 706 aa5.91□□□□□ -1.46
VPS35-201ENST00000299138 OR2D2Q9H210 308 aa5.91□□□□□ -1.46
VPS35-201ENST00000299138 SIDT1Q9NXL6 827 aaKnown RBP5.91□□□□□ -1.46
VPS35-201ENST00000299138 COL4A4P53420 1690 aaPredicted RBP5.91□□□□□ -1.46
VPS35-201ENST00000299138 SLC22A20A6NK97 555 aa5.91□□□□□ -1.46
VPS35-201ENST00000299138 H7BY64 318 aa5.91□□□□□ -1.46
VPS35-201ENST00000299138 M0R143 59 aa5.91□□□□□ -1.46
VPS35-201ENST00000299138 SLC16A7O60669 478 aa5.91□□□□□ -1.46
VPS35-201ENST00000299138 HBE1P02100 147 aa5.91□□□□□ -1.46
VPS35-201ENST00000299138 SPNP16150 400 aa5.91□□□□□ -1.46
VPS35-201ENST00000299138 RAB5AP20339 215 aa5.91□□□□□ -1.46
VPS35-201ENST00000299138 S100A4P26447 101 aaKnown RBP5.91□□□□□ -1.46
VPS35-201ENST00000299138 GPR143P51810 404 aa5.91□□□□□ -1.46
VPS35-201ENST00000299138 MVDP53602 400 aa5.91□□□□□ -1.46
VPS35-201ENST00000299138 TPPP2P59282 170 aa5.91□□□□□ -1.46
VPS35-201ENST00000299138 GPLD1P80108 840 aa5.91□□□□□ -1.46
VPS35-201ENST00000299138 UBXN2BQ14CS0 331 aa5.91□□□□□ -1.46
VPS35-201ENST00000299138 PODNL1Q6PEZ8 512 aa5.91□□□□□ -1.46
VPS35-201ENST00000299138 Q6ZN92 141 aa5.91□□□□□ -1.46
VPS35-201ENST00000299138 CLDN19Q8N6F1 224 aa5.91□□□□□ -1.46
VPS35-201ENST00000299138 MCHR1Q99705 422 aa5.91□□□□□ -1.46
VPS35-201ENST00000299138 SLC23A2Q9UGH3 650 aa5.91□□□□□ -1.46
VPS35-201ENST00000299138 A0A1B0GTL3 188 aa5.91□□□□□ -1.46
VPS35-201ENST00000299138 ACOD1A6NK06 481 aa5.91□□□□□ -1.46
VPS35-201ENST00000299138 ARPC3O15145 178 aa5.91□□□□□ -1.46
VPS35-201ENST00000299138 CLDN7O95471 211 aa5.91□□□□□ -1.46
VPS35-201ENST00000299138 CST2P09228 141 aa5.91□□□□□ -1.46
VPS35-201ENST00000299138 SLC35G6P0C7Q6 338 aa5.91□□□□□ -1.46
VPS35-201ENST00000299138 TMEM225BP0DP42 221 aa5.91□□□□□ -1.46
VPS35-201ENST00000299138 MGMTP16455 207 aa5.91□□□□□ -1.46
VPS35-201ENST00000299138 ZNF8P17098 575 aaPredicted RBP5.91□□□□□ -1.46
VPS35-201ENST00000299138 ANXA7P20073 488 aaKnown RBP5.91□□□□□ -1.46
VPS35-201ENST00000299138 FOXK2Q01167 660 aa5.91□□□□□ -1.46
VPS35-201ENST00000299138 PTPRCAPQ14761 206 aa5.91□□□□□ -1.46
VPS35-201ENST00000299138 APOOLQ6UXV4 268 aa5.91□□□□□ -1.46
VPS35-201ENST00000299138 ZNF620Q6ZNG0 422 aa5.91□□□□□ -1.46
VPS35-201ENST00000299138 SLC38A5Q8WUX1 472 aa5.91□□□□□ -1.46
VPS35-201ENST00000299138 TP53RKQ96S44 253 aa5.91□□□□□ -1.46
VPS35-201ENST00000299138 CNN2Q99439 309 aaKnown RBP5.91□□□□□ -1.46
VPS35-201ENST00000299138 MAP3K3Q99759 626 aa5.91□□□□□ -1.46
VPS35-201ENST00000299138 ALG8Q9BVK2 526 aa5.91□□□□□ -1.46
VPS35-201ENST00000299138 ZDHHC5Q9C0B5 715 aa5.91□□□□□ -1.46
VPS35-201ENST00000299138 LYRM2Q9NU23 88 aaPredicted RBP5.91□□□□□ -1.46
VPS35-201ENST00000299138 ZNF646O15015 1829 aaPredicted RBP5.9□□□□□ -1.46
VPS35-201ENST00000299138 TEX50A0A1B0GTY4 177 aa5.9□□□□□ -1.46
VPS35-201ENST00000299138 ANTXRLA6NF34 631 aa5.9□□□□□ -1.46
VPS35-201ENST00000299138 IGLON5A6NGN9 336 aa5.9□□□□□ -1.46
VPS35-201ENST00000299138 ERVH48-1M5A8F1 160 aa5.9□□□□□ -1.46
VPS35-201ENST00000299138 EPHX1P07099 455 aa5.9□□□□□ -1.46
VPS35-201ENST00000299138 F7P08709 466 aaPredicted RBP5.9□□□□□ -1.46
VPS35-201ENST00000299138 FGF7P21781 194 aa5.9□□□□□ -1.46
VPS35-201ENST00000299138 RAD52P43351 418 aa5.9□□□□□ -1.46
VPS35-201ENST00000299138 PPOXP50336 477 aa5.9□□□□□ -1.46
VPS35-201ENST00000299138 CAMK2DQ13557 499 aa5.9□□□□□ -1.46
VPS35-201ENST00000299138 EXOSC2Q13868 293 aaKnown RBP5.9□□□□□ -1.46
VPS35-201ENST00000299138 IQCJQ1A5X6 159 aa5.9□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms