RNA–Protein interactions for RNA: ENST00000298260.8

SKA3-201, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 2,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-201ENST00000298260 SNRNP70P08621 437 aaKnown RBP12.24□□□□□ -0.45
SKA3-201ENST00000298260 CALCBP10092 127 aa12.24□□□□□ -0.45
SKA3-201ENST00000298260 NME2P22392 152 aa12.24□□□□□ -0.45
SKA3-201ENST00000298260 SLC48A1Q6P1K1 146 aa12.24□□□□□ -0.45
SKA3-201ENST00000298260 PAQR4Q8N4S7 273 aaPredicted RBP12.24□□□□□ -0.45
SKA3-201ENST00000298260 OR5AK2Q8NH90 309 aa12.24□□□□□ -0.45
SKA3-201ENST00000298260 NKD1Q969G9 470 aa12.24□□□□□ -0.45
SKA3-201ENST00000298260 HAO2Q9NYQ3 351 aa12.24□□□□□ -0.45
SKA3-201ENST00000298260 GXYLT2A0PJZ3 443 aa12.24□□□□□ -0.45
SKA3-201ENST00000298260 C5orf51A6NDU8 294 aa12.24□□□□□ -0.45
SKA3-201ENST00000298260 GRM6O15303 877 aa12.24□□□□□ -0.45
SKA3-201ENST00000298260 ATXN8OSP0DMR3 200 aa12.24□□□□□ -0.45
SKA3-201ENST00000298260 CD79AP11912 226 aa12.24□□□□□ -0.45
SKA3-201ENST00000298260 NME1P15531 152 aaKnown RBP12.24□□□□□ -0.45
SKA3-201ENST00000298260 SPI1P17947 270 aa12.24□□□□□ -0.45
SKA3-201ENST00000298260 C2orf76Q3KRA6 126 aa12.24□□□□□ -0.45
SKA3-201ENST00000298260 Q499Y3 187 aa12.24□□□□□ -0.45
SKA3-201ENST00000298260 LIN28BQ6ZN17 250 aaKnown RBP eCLIP12.24□□□□□ -0.45
SKA3-201ENST00000298260 TMPRSS11FQ6ZWK6 438 aa12.24□□□□□ -0.45
SKA3-201ENST00000298260 ABHD13Q7L211 337 aa12.24□□□□□ -0.45
SKA3-201ENST00000298260 ADIPOR2Q86V24 386 aa12.24□□□□□ -0.45
SKA3-201ENST00000298260 ZNF681Q96N22 645 aa12.24□□□□□ -0.45
SKA3-201ENST00000298260 CALML5Q9NZT1 146 aa12.24□□□□□ -0.45
SKA3-201ENST00000298260 IKZF2Q9UKS7 526 aa12.24□□□□□ -0.45
SKA3-201ENST00000298260 CDV3Q9UKY7 258 aaKnown RBP12.24□□□□□ -0.45
SKA3-201ENST00000298260 ICAM5Q9UMF0 924 aa12.24□□□□□ -0.45
SKA3-201ENST00000298260 GTF2A1LQ9UNN4 478 aa12.24□□□□□ -0.45
SKA3-201ENST00000298260 FAM157CP0CG43 387 aa12.24□□□□□ -0.45
SKA3-201ENST00000298260 ACRP10323 421 aa12.24□□□□□ -0.45
SKA3-201ENST00000298260 EPCAMP16422 314 aa12.24□□□□□ -0.45
SKA3-201ENST00000298260 AKR1C4P17516 323 aa12.24□□□□□ -0.45
SKA3-201ENST00000298260 PSMD4P55036 377 aaKnown RBP12.24□□□□□ -0.45
SKA3-201ENST00000298260 HGFACQ04756 655 aa12.24□□□□□ -0.45
SKA3-201ENST00000298260 ZNF345Q14585 488 aa12.24□□□□□ -0.45
SKA3-201ENST00000298260 MOGAT2Q3SYC2 334 aa12.24□□□□□ -0.45
SKA3-201ENST00000298260 UNQ6494/PRO21346Q6UXR6 183 aa12.24□□□□□ -0.45
SKA3-201ENST00000298260 DNM1P46Q6ZS02 220 aa12.24□□□□□ -0.45
SKA3-201ENST00000298260 ZC3HAV1Q7Z2W4 902 aaKnown RBP12.24□□□□□ -0.45
SKA3-201ENST00000298260 OR13C8Q8NGS7 320 aa12.24□□□□□ -0.45
SKA3-201ENST00000298260 SUSD6Q92537 303 aa12.24□□□□□ -0.45
SKA3-201ENST00000298260 CFHR5Q9BXR6 569 aa12.24□□□□□ -0.45
SKA3-201ENST00000298260 LEFTY2O00292 366 aa12.23□□□□□ -0.45
SKA3-201ENST00000298260 IFNGP01579 166 aa12.23□□□□□ -0.45
SKA3-201ENST00000298260 CD74P04233 296 aa12.23□□□□□ -0.45
SKA3-201ENST00000298260 CD96P40200 585 aa12.23□□□□□ -0.45
SKA3-201ENST00000298260 BTN3A2P78410 334 aa12.23□□□□□ -0.45
SKA3-201ENST00000298260 SQSTM1Q13501 440 aa12.23□□□□□ -0.45
SKA3-201ENST00000298260 ANKRD16Q6P6B7 361 aa12.23□□□□□ -0.45
SKA3-201ENST00000298260 ABHD17CQ6PCB6 329 aa12.23□□□□□ -0.45
SKA3-201ENST00000298260 RTN4RL2Q86UN3 420 aa12.23□□□□□ -0.45
SKA3-201ENST00000298260 BAP18Q8IXM2 172 aa12.23□□□□□ -0.45
SKA3-201ENST00000298260 BPIFB2Q8N4F0 458 aa12.23□□□□□ -0.45
SKA3-201ENST00000298260 WDSUB1Q8N9V3 476 aa12.23□□□□□ -0.45
SKA3-201ENST00000298260 ADAD2Q8NCV1 583 aaKnown RBP12.23□□□□□ -0.45
SKA3-201ENST00000298260 SFXN5Q8TD22 340 aa12.23□□□□□ -0.45
SKA3-201ENST00000298260 SECTM1Q8WVN6 248 aa12.23□□□□□ -0.45
SKA3-201ENST00000298260 SEH1LQ96EE3 360 aa12.23□□□□□ -0.45
SKA3-201ENST00000298260 PHYHIPLQ96FC7 376 aa12.23□□□□□ -0.45
SKA3-201ENST00000298260 LGR4Q9BXB1 951 aa12.23□□□□□ -0.45
SKA3-201ENST00000298260 ZNF350Q9GZX5 532 aa12.23□□□□□ -0.45
SKA3-201ENST00000298260 C1orf198Q9H425 327 aa12.23□□□□□ -0.45
SKA3-201ENST00000298260 SLC27A6Q9Y2P4 619 aa12.23□□□□□ -0.45
SKA3-201ENST00000298260 LRRK1Q38SD2 2015 aa12.23□□□□□ -0.45
SKA3-201ENST00000298260 DCTN6O00399 190 aa12.23□□□□□ -0.45
SKA3-201ENST00000298260 SOX1O00570 391 aaPredicted RBP12.23□□□□□ -0.45
SKA3-201ENST00000298260 FBP1P09467 338 aa12.23□□□□□ -0.45
SKA3-201ENST00000298260 RCC1P18754 421 aaPredicted RBP12.23□□□□□ -0.45
SKA3-201ENST00000298260 PBX2P40425 430 aa12.23□□□□□ -0.45
SKA3-201ENST00000298260 LPAR6P43657 344 aa12.23□□□□□ -0.45
SKA3-201ENST00000298260 NTHL1P78549 312 aa12.23□□□□□ -0.45
SKA3-201ENST00000298260 PJVKQ0ZLH3 352 aa12.23□□□□□ -0.45
SKA3-201ENST00000298260 DHRS11Q6UWP2 260 aa12.23□□□□□ -0.45
SKA3-201ENST00000298260 LRRC69Q6ZNQ3 347 aa12.23□□□□□ -0.45
SKA3-201ENST00000298260 GVQW1Q8N7I0 195 aa12.23□□□□□ -0.45
SKA3-201ENST00000298260 INSM2Q96T92 566 aaPredicted RBP12.23□□□□□ -0.45
SKA3-201ENST00000298260 GGACTQ9BVM4 153 aa12.23□□□□□ -0.45
SKA3-201ENST00000298260 MFRPQ9BY79 579 aa12.23□□□□□ -0.45
SKA3-201ENST00000298260 SRA1Q9HD15 236 aaKnown RBP12.23□□□□□ -0.45
SKA3-201ENST00000298260 CHRNA9Q9UGM1 479 aa12.23□□□□□ -0.45
SKA3-201ENST00000298260 APOBEC3BQ9UH17 382 aaKnown RBP12.23□□□□□ -0.45
SKA3-201ENST00000298260 MRM2Q9UI43 246 aaKnown RBP12.23□□□□□ -0.45
SKA3-201ENST00000298260 MSRAQ9UJ68 235 aa12.23□□□□□ -0.45
SKA3-201ENST00000298260 ZNF780BQ9Y6R6 833 aa12.23□□□□□ -0.45
SKA3-201ENST00000298260 TRIOO75962 3097 aa12.23□□□□□ -0.45
SKA3-201ENST00000298260 A0A1B0GWA3 101 aa12.22□□□□□ -0.45
SKA3-201ENST00000298260 TMEM235A6NFC5 223 aa12.22□□□□□ -0.45
SKA3-201ENST00000298260 ZNF860A6NHJ4 632 aa12.22□□□□□ -0.45
SKA3-201ENST00000298260 RNASEK-C17orf49H0YIS7 233 aa12.22□□□□□ -0.45
SKA3-201ENST00000298260 SPINT1O43278 529 aa12.22□□□□□ -0.45
SKA3-201ENST00000298260 GATCO43716 136 aaKnown RBP12.22□□□□□ -0.45
SKA3-201ENST00000298260 SELPP16109 830 aa12.22□□□□□ -0.45
SKA3-201ENST00000298260 CSRP1P21291 193 aaKnown RBP12.22□□□□□ -0.45
SKA3-201ENST00000298260 SLC6A6P31641 620 aa12.22□□□□□ -0.45
SKA3-201ENST00000298260 DIO1P49895 249 aa12.22□□□□□ -0.45
SKA3-201ENST00000298260 MESP2Q0VG99 397 aa12.22□□□□□ -0.45
SKA3-201ENST00000298260 POU4F2Q12837 409 aa12.22□□□□□ -0.45
SKA3-201ENST00000298260 ILF3Q12906 894 aaKnown RBP eCLIP12.22□□□□□ -0.451e-7■■■■□ 26.5
SKA3-201ENST00000298260 EXOSC7Q15024 291 aaKnown RBP12.22□□□□□ -0.45
SKA3-201ENST00000298260 PGAP1Q75T13 922 aa12.22□□□□□ -0.45
SKA3-201ENST00000298260 ZNF227Q86WZ6 799 aa12.22□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms