RNA–Protein interactions for RNA: ENST00000297261.6

SHH-201, Transcript of sonic hedgehog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHH, Length 4,454 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-201ENST00000297261 PLA2G7Q13093 441 aa14.08□□□□□ -0.16
SHH-201ENST00000297261 SOHLH1Q5JUK2 328 aa14.08□□□□□ -0.16
SHH-201ENST00000297261 MFSD12Q6NUT3 480 aa14.08□□□□□ -0.16
SHH-201ENST00000297261 OVCH1Q7RTY7 1134 aa14.08□□□□□ -0.16
SHH-201ENST00000297261 OR4K15Q8NH41 348 aa14.08□□□□□ -0.16
SHH-201ENST00000297261 TBC1D29Q9UFV1 150 aa14.08□□□□□ -0.16
SHH-201ENST00000297261 PURGQ9UJV8 347 aaKnown RBP14.08□□□□□ -0.16
SHH-201ENST00000297261 VWA8A3KMH1 1905 aa14.08□□□□□ -0.16
SHH-201ENST00000297261 TRBV5-3A0A0A0MS03 114 aa14.08□□□□□ -0.16
SHH-201ENST00000297261 EFCAB7A8K855 629 aa14.08□□□□□ -0.16
SHH-201ENST00000297261 PYCARD-AS1I3L0S3 204 aa14.08□□□□□ -0.16
SHH-201ENST00000297261 CD3DP04234 171 aa14.08□□□□□ -0.16
SHH-201ENST00000297261 REEP5Q00765 189 aa14.08□□□□□ -0.16
SHH-201ENST00000297261 OR13H1Q8NG92 308 aa14.08□□□□□ -0.16
SHH-201ENST00000297261 OR4Q3Q8NH05 313 aa14.08□□□□□ -0.16
SHH-201ENST00000297261 PHYHIPQ92561 330 aa14.08□□□□□ -0.16
SHH-201ENST00000297261 SLC41A2Q96JW4 573 aa14.08□□□□□ -0.16
SHH-201ENST00000297261 ADOQ96SZ5 270 aa14.08□□□□□ -0.16
SHH-201ENST00000297261 SLC25A32Q9H2D1 315 aa14.08□□□□□ -0.16
SHH-201ENST00000297261 ZNF442Q9H7R0 627 aa14.08□□□□□ -0.16
SHH-201ENST00000297261 SLC25A19Q9HC21 320 aa14.08□□□□□ -0.16
SHH-201ENST00000297261 EHFQ9NZC4 300 aa14.08□□□□□ -0.16
SHH-201ENST00000297261 ETV7Q9Y603 341 aa14.08□□□□□ -0.16
SHH-201ENST00000297261 RNF215Q9Y6U7 377 aa14.08□□□□□ -0.16
SHH-201ENST00000297261 PATJQ8NI35 1801 aa14.08□□□□□ -0.16
SHH-201ENST00000297261 A0A0A6YYC8 382 aaPredicted RBP14.07□□□□□ -0.16
SHH-201ENST00000297261 TMEM212A6NML5 194 aa14.07□□□□□ -0.16
SHH-201ENST00000297261 C2CD4DB7Z1M9 353 aa14.07□□□□□ -0.16
SHH-201ENST00000297261 I3L1I5 382 aaPredicted RBP14.07□□□□□ -0.16
SHH-201ENST00000297261 PPM1DO15297 605 aa14.07□□□□□ -0.16
SHH-201ENST00000297261 STK17BO94768 372 aa14.07□□□□□ -0.16
SHH-201ENST00000297261 GPR75O95800 540 aa14.07□□□□□ -0.16
SHH-201ENST00000297261 PNMTP11086 282 aa14.07□□□□□ -0.16
SHH-201ENST00000297261 DLX2Q07687 328 aaPredicted RBP14.07□□□□□ -0.16
SHH-201ENST00000297261 KIAA0895LQ68EN5 471 aa14.07□□□□□ -0.16
SHH-201ENST00000297261 GPR32P1Q8NGA4 272 aa14.07□□□□□ -0.16
SHH-201ENST00000297261 HOXB13Q92826 284 aaPredicted RBP14.07□□□□□ -0.16
SHH-201ENST00000297261 STEAP1Q9UHE8 339 aa14.07□□□□□ -0.16
SHH-201ENST00000297261 A4GNTQ9UNA3 340 aa14.07□□□□□ -0.16
SHH-201ENST00000297261 PEX12O00623 359 aa14.07□□□□□ -0.16
SHH-201ENST00000297261 PLRG1O43660 514 aaKnown RBP14.07□□□□□ -0.16
SHH-201ENST00000297261 IFNA10P01566 189 aa14.07□□□□□ -0.16
SHH-201ENST00000297261 IFNA4P05014 189 aa14.07□□□□□ -0.16
SHH-201ENST00000297261 YPEL5P62699 121 aa14.07□□□□□ -0.16
SHH-201ENST00000297261 DUSP5Q16690 384 aa14.07□□□□□ -0.16
SHH-201ENST00000297261 MEP1BQ16820 701 aa14.07□□□□□ -0.16
SHH-201ENST00000297261 TMEM244Q5VVB8 128 aa14.07□□□□□ -0.16
SHH-201ENST00000297261 SULF2Q8IWU5 870 aa14.07□□□□□ -0.16
SHH-201ENST00000297261 FBXL6Q8N531 539 aa14.07□□□□□ -0.16
SHH-201ENST00000297261 HSD17B11Q8NBQ5 300 aa14.07□□□□□ -0.16
SHH-201ENST00000297261 LURAP1Q96LR2 239 aa14.07□□□□□ -0.16
SHH-201ENST00000297261 METTL7AQ9H8H3 244 aa14.07□□□□□ -0.16
SHH-201ENST00000297261 TPRP12270 2363 aaKnown RBP14.07□□□□□ -0.16
SHH-201ENST00000297261 AKR1C3P42330 323 aa14.07□□□□□ -0.16
SHH-201ENST00000297261 SLC48A1Q6P1K1 146 aa14.07□□□□□ -0.16
SHH-201ENST00000297261 LRRTM1Q86UE6 522 aa14.07□□□□□ -0.16
SHH-201ENST00000297261 CCDC54Q8NEL0 328 aa14.07□□□□□ -0.16
SHH-201ENST00000297261 C6orf106Q9H6K1 298 aaPredicted RBP14.07□□□□□ -0.16
SHH-201ENST00000297261 VSX1Q9NZR4 365 aaPredicted RBP14.07□□□□□ -0.16
SHH-201ENST00000297261 ZNF705FA8MVS1 300 aaPredicted RBP14.07□□□□□ -0.16
SHH-201ENST00000297261 AIPO00170 330 aa14.07□□□□□ -0.16
SHH-201ENST00000297261 ZNF705DP0CH99 300 aaPredicted RBP14.07□□□□□ -0.16
SHH-201ENST00000297261 ZNF705BP0CI00 300 aaPredicted RBP14.07□□□□□ -0.16
SHH-201ENST00000297261 MMP15P51511 669 aa14.07□□□□□ -0.16
SHH-201ENST00000297261 UBE2KP61086 200 aa14.07□□□□□ -0.16
SHH-201ENST00000297261 KIAA0141Q14154 515 aaPredicted RBP14.07□□□□□ -0.16
SHH-201ENST00000297261 IGSF11Q5DX21 431 aa14.07□□□□□ -0.16
SHH-201ENST00000297261 PDZD11Q5EBL8 140 aa14.07□□□□□ -0.16
SHH-201ENST00000297261 ABHD17CQ6PCB6 329 aa14.07□□□□□ -0.16
SHH-201ENST00000297261 ZNF836Q6ZNA1 936 aa14.07□□□□□ -0.16
SHH-201ENST00000297261 ABHD12BQ7Z5M8 362 aaPredicted RBP14.07□□□□□ -0.16
SHH-201ENST00000297261 ZNF547Q8IVP9 402 aa14.07□□□□□ -0.16
SHH-201ENST00000297261 LAS2Q8IYD9 372 aa14.07□□□□□ -0.16
SHH-201ENST00000297261 CCL4L1Q8NHW4 92 aa14.07□□□□□ -0.16
SHH-201ENST00000297261 SYT3Q9BQG1 590 aa14.07□□□□□ -0.16
SHH-201ENST00000297261 GAREM1Q9H706 876 aa14.07□□□□□ -0.16
SHH-201ENST00000297261 MMP17Q9ULZ9 603 aa14.07□□□□□ -0.16
SHH-201ENST00000297261 DNAJC13O75165 2243 aa14.07□□□□□ -0.16
SHH-201ENST00000297261 A0A1W2PR48 441 aa14.06□□□□□ -0.16
SHH-201ENST00000297261 HYAL3O43820 417 aaPredicted RBP14.06□□□□□ -0.16
SHH-201ENST00000297261 CEACAM5P06731 702 aa14.06□□□□□ -0.16
SHH-201ENST00000297261 PRPH2P23942 346 aa14.06□□□□□ -0.16
SHH-201ENST00000297261 CHATP28329 748 aa14.06□□□□□ -0.16
SHH-201ENST00000297261 GSG1Q2KHT4 349 aa14.06□□□□□ -0.16
SHH-201ENST00000297261 GPR139Q6DWJ6 353 aa14.06□□□□□ -0.16
SHH-201ENST00000297261 LAIR2Q6ISS4 152 aa14.06□□□□□ -0.16
SHH-201ENST00000297261 USP53Q70EK8 1073 aa14.06□□□□□ -0.16
SHH-201ENST00000297261 FAM213BQ8TBF2 198 aa14.06□□□□□ -0.16
SHH-201ENST00000297261 TEX101Q9BY14 249 aa14.06□□□□□ -0.16
SHH-201ENST00000297261 ENTPD2Q9Y5L3 495 aa14.06□□□□□ -0.16
SHH-201ENST00000297261 TUBAL3A6NHL2 446 aa14.06□□□□□ -0.16
SHH-201ENST00000297261 H3BML4 177 aa14.06□□□□□ -0.16
SHH-201ENST00000297261 OR2F2O95006 317 aa14.06□□□□□ -0.16
SHH-201ENST00000297261 AFF3P51826 1226 aaKnown RBP14.06□□□□□ -0.16
SHH-201ENST00000297261 HMGA2P52926 109 aa14.06□□□□□ -0.16
SHH-201ENST00000297261 HNRNPKP61978 463 aaKnown RBP eCLIP14.06□□□□□ -0.16
SHH-201ENST00000297261 OR2F1Q13607 317 aa14.06□□□□□ -0.16
SHH-201ENST00000297261 HLXQ14774 488 aaPredicted RBP14.06□□□□□ -0.16
SHH-201ENST00000297261 CDK5R1Q15078 307 aa14.06□□□□□ -0.16
SHH-201ENST00000297261 ACOT7LQ6ZUV0 252 aa14.06□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms