RNA–Protein interactions for RNA: ENST00000254950.12

VPS4A-201, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4A, Length 4,100 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-201ENST00000254950 GFRA3O60609 400 aa10.44□□□□□ -0.74
VPS4A-201ENST00000254950 ECDO95905 644 aaPredicted RBP10.44□□□□□ -0.74
VPS4A-201ENST00000254950 LIFP15018 202 aa10.44□□□□□ -0.74
VPS4A-201ENST00000254950 MSR1P21757 451 aa10.44□□□□□ -0.74
VPS4A-201ENST00000254950 APLNRP35414 380 aa10.44□□□□□ -0.74
VPS4A-201ENST00000254950 HTR5AP47898 357 aa10.44□□□□□ -0.74
VPS4A-201ENST00000254950 HCCSP53701 268 aa10.44□□□□□ -0.74
VPS4A-201ENST00000254950 RAB11BQ15907 218 aa10.44□□□□□ -0.74
VPS4A-201ENST00000254950 C11orf88Q6PI97 169 aa10.44□□□□□ -0.74
VPS4A-201ENST00000254950 COMTD1Q86VU5 262 aa10.44□□□□□ -0.74
VPS4A-201ENST00000254950 PHYHIPQ92561 330 aa10.44□□□□□ -0.74
VPS4A-201ENST00000254950 INTS12Q96CB8 462 aaKnown RBP10.44□□□□□ -0.74
VPS4A-201ENST00000254950 SLC25A18Q9H1K4 315 aa10.44□□□□□ -0.74
VPS4A-201ENST00000254950 CPNE5Q9HCH3 593 aa10.44□□□□□ -0.74
VPS4A-201ENST00000254950 MRPS18BQ9Y676 258 aaKnown RBP10.44□□□□□ -0.74
VPS4A-201ENST00000254950 SCN8AQ9UQD0 1980 aa10.44□□□□□ -0.74
VPS4A-201ENST00000254950 LRRK1Q38SD2 2015 aa10.44□□□□□ -0.74
VPS4A-201ENST00000254950 OR6C68A6NDL8 312 aa10.43□□□□□ -0.74
VPS4A-201ENST00000254950 SELENOVP59797 346 aa10.43□□□□□ -0.74
VPS4A-201ENST00000254950 GPR50Q13585 617 aa10.43□□□□□ -0.74
VPS4A-201ENST00000254950 TPBGQ13641 420 aa10.43□□□□□ -0.74
VPS4A-201ENST00000254950 KANSL1Q7Z3B3 1105 aa10.43□□□□□ -0.74
VPS4A-201ENST00000254950 UXS1Q8NBZ7 420 aa10.43□□□□□ -0.74
VPS4A-201ENST00000254950 TMEM41AQ96HV5 264 aa10.43□□□□□ -0.74
VPS4A-201ENST00000254950 SVILO95425 2214 aa10.43□□□□□ -0.74
VPS4A-201ENST00000254950 ACOD1A6NK06 481 aa10.43□□□□□ -0.74
VPS4A-201ENST00000254950 OPRL1P41146 370 aa10.43□□□□□ -0.74
VPS4A-201ENST00000254950 BDH1Q02338 343 aa10.43□□□□□ -0.74
VPS4A-201ENST00000254950 SLC36A2Q495M3 483 aa10.43□□□□□ -0.74
VPS4A-201ENST00000254950 LCN10Q6JVE6 187 aa10.43□□□□□ -0.74
VPS4A-201ENST00000254950 ELP5Q8TE02 316 aa10.43□□□□□ -0.74
VPS4A-201ENST00000254950 ROBO4Q8WZ75 1007 aa10.43□□□□□ -0.74
VPS4A-201ENST00000254950 LRRC46Q96FV0 321 aa10.43□□□□□ -0.74
VPS4A-201ENST00000254950 MFRPQ9BY79 579 aa10.43□□□□□ -0.74
VPS4A-201ENST00000254950 IFT46Q9NQC8 304 aa10.43□□□□□ -0.74
VPS4A-201ENST00000254950 ENAMQ9NRM1 1142 aa10.43□□□□□ -0.74
VPS4A-201ENST00000254950 ACOXLQ9NUZ1 547 aa10.43□□□□□ -0.74
VPS4A-201ENST00000254950 ZNF223Q9UK11 482 aaPredicted RBP10.43□□□□□ -0.74
VPS4A-201ENST00000254950 TRAPPC4Q9Y296 219 aa10.43□□□□□ -0.74
VPS4A-201ENST00000254950 DCDC2BA2VCK2 349 aa10.43□□□□□ -0.74
VPS4A-201ENST00000254950 TRABD2BA6NFA1 517 aa10.43□□□□□ -0.74
VPS4A-201ENST00000254950 GGT3PA6NGU5 568 aa10.43□□□□□ -0.74
VPS4A-201ENST00000254950 ITGB2P05107 769 aa10.43□□□□□ -0.74
VPS4A-201ENST00000254950 UGT2B10P36537 528 aa10.43□□□□□ -0.74
VPS4A-201ENST00000254950 RPS27P42677 84 aaKnown RBP10.43□□□□□ -0.74
VPS4A-201ENST00000254950 Q499Y3 187 aa10.43□□□□□ -0.74
VPS4A-201ENST00000254950 CCDC58Q4VC31 144 aa10.43□□□□□ -0.74
VPS4A-201ENST00000254950 HES5Q5TA89 166 aa10.43□□□□□ -0.74
VPS4A-201ENST00000254950 TIGD4Q8IY51 512 aa10.43□□□□□ -0.74
VPS4A-201ENST00000254950 CPT1CQ8TCG5 803 aa10.43□□□□□ -0.74
VPS4A-201ENST00000254950 OPALINQ96PE5 141 aa10.43□□□□□ -0.74
VPS4A-201ENST00000254950 MRI1Q9BV20 369 aa10.43□□□□□ -0.74
VPS4A-201ENST00000254950 PALMDQ9NP74 551 aa10.43□□□□□ -0.74
VPS4A-201ENST00000254950 EMC7Q9NPA0 242 aa10.43□□□□□ -0.74
VPS4A-201ENST00000254950 LIPT2A6NK58 231 aa10.43□□□□□ -0.74
VPS4A-201ENST00000254950 DHHO43323 396 aa10.43□□□□□ -0.74
VPS4A-201ENST00000254950 ZNF254O75437 659 aa10.43□□□□□ -0.74
VPS4A-201ENST00000254950 CDKN2AP42771 156 aaKnown RBP10.43□□□□□ -0.74
VPS4A-201ENST00000254950 XKRXQ6PP77 449 aa10.43□□□□□ -0.74
VPS4A-201ENST00000254950 ASB18Q6ZVZ8 466 aa10.43□□□□□ -0.74
VPS4A-201ENST00000254950 NFAM1Q8NET5 270 aaPredicted RBP10.43□□□□□ -0.74
VPS4A-201ENST00000254950 FGF11Q92914 225 aa10.43□□□□□ -0.74
VPS4A-201ENST00000254950 TSPAN32Q96QS1 320 aa10.43□□□□□ -0.74
VPS4A-201ENST00000254950 LRFN3Q9BTN0 628 aa10.43□□□□□ -0.74
VPS4A-201ENST00000254950 ANGPTL4Q9BY76 406 aa10.43□□□□□ -0.74
VPS4A-201ENST00000254950 ADAM19Q9H013 955 aa10.43□□□□□ -0.74
VPS4A-201ENST00000254950 ASH2LQ9UBL3 628 aa10.43□□□□□ -0.74
VPS4A-201ENST00000254950 V9GY05 133 aa10.43□□□□□ -0.74
VPS4A-201ENST00000254950 ALPK2Q86TB3 2170 aa10.42□□□□□ -0.74
VPS4A-201ENST00000254950 IGHV3-9P01782 118 aa10.42□□□□□ -0.74
VPS4A-201ENST00000254950 CPEP16870 476 aa10.42□□□□□ -0.74
VPS4A-201ENST00000254950 CD96P40200 585 aa10.42□□□□□ -0.74
VPS4A-201ENST00000254950 PPP5CP53041 499 aa10.42□□□□□ -0.74
VPS4A-201ENST00000254950 PLPPR5Q32ZL2 321 aa10.42□□□□□ -0.74
VPS4A-201ENST00000254950 YIF1BQ5BJH7 314 aa10.42□□□□□ -0.74
VPS4A-201ENST00000254950 FAM57BQ71RH2 274 aa10.42□□□□□ -0.74
VPS4A-201ENST00000254950 PEG10Q86TG7 708 aaKnown RBP10.42□□□□□ -0.74
VPS4A-201ENST00000254950 TOMM5Q8N4H5 51 aa10.42□□□□□ -0.74
VPS4A-201ENST00000254950 TRMT10AQ8TBZ6 339 aaKnown RBP10.42□□□□□ -0.74
VPS4A-201ENST00000254950 APOBEC4Q8WW27 367 aaKnown RBP10.42□□□□□ -0.74
VPS4A-201ENST00000254950 TMEM106AQ96A25 262 aa10.42□□□□□ -0.74
VPS4A-201ENST00000254950 SLC22A4Q9H015 551 aa10.42□□□□□ -0.74
VPS4A-201ENST00000254950 SIAEQ9HAT2 523 aa10.42□□□□□ -0.74
VPS4A-201ENST00000254950 NDUFB11Q9NX14 153 aa10.42□□□□□ -0.74
VPS4A-201ENST00000254950 KCNG2Q9UJ96 466 aa10.42□□□□□ -0.74
VPS4A-201ENST00000254950 ZNF814B7Z6K7 855 aa10.42□□□□□ -0.74
VPS4A-201ENST00000254950 C9orf172C9J069 976 aa10.42□□□□□ -0.74
VPS4A-201ENST00000254950 ZNF878C9JN71 531 aa10.42□□□□□ -0.74
VPS4A-201ENST00000254950 SULT1C4O75897 302 aa10.42□□□□□ -0.74
VPS4A-201ENST00000254950 EPPINO95925 133 aa10.42□□□□□ -0.74
VPS4A-201ENST00000254950 BGLAPP02818 100 aa10.42□□□□□ -0.74
VPS4A-201ENST00000254950 CD53P19397 219 aa10.42□□□□□ -0.74
VPS4A-201ENST00000254950 RAC3P60763 192 aa10.42□□□□□ -0.74
VPS4A-201ENST00000254950 STK11Q15831 433 aa10.42□□□□□ -0.74
VPS4A-201ENST00000254950 SLC25A30Q5SVS4 291 aa10.42□□□□□ -0.74
VPS4A-201ENST00000254950 ZNF585AQ6P3V2 769 aa10.42□□□□□ -0.74
VPS4A-201ENST00000254950 BAIAP2L2Q6UXY1 529 aa10.42□□□□□ -0.74
VPS4A-201ENST00000254950 MRPL21Q7Z2W9 205 aaKnown RBP10.42□□□□□ -0.74
VPS4A-201ENST00000254950 CCDC71Q8IV32 467 aaPredicted RBP10.42□□□□□ -0.74
VPS4A-201ENST00000254950 ZNF679Q8IYX0 411 aa10.42□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms