RNA–Protein interactions for RNA: ENST00000238112.7

CPSF3-201, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF3, Length 2,345 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-201ENST00000238112 GABRA4P48169 554 aa16.93■□□□□ 0.3
CPSF3-201ENST00000238112 EFNB2P52799 333 aa16.93■□□□□ 0.3
CPSF3-201ENST00000238112 RAB11BQ15907 218 aa16.93■□□□□ 0.3
CPSF3-201ENST00000238112 MEP1BQ16820 701 aa16.93■□□□□ 0.3
CPSF3-201ENST00000238112 TGM7Q96PF1 710 aa16.93■□□□□ 0.3
CPSF3-201ENST00000238112 PDE7BQ9NP56 450 aa16.93■□□□□ 0.3
CPSF3-201ENST00000238112 TRAV18A0A075B6X5 111 aa16.92■□□□□ 0.3
CPSF3-201ENST00000238112 SLC25A12O75746 678 aa16.92■□□□□ 0.3
CPSF3-201ENST00000238112 GTF2F2P13984 249 aa16.92■□□□□ 0.3
CPSF3-201ENST00000238112 IL12BP29460 328 aa16.92■□□□□ 0.3
CPSF3-201ENST00000238112 SLC35D2Q76EJ3 337 aa16.92■□□□□ 0.3
CPSF3-201ENST00000238112 ZSCAN2Q7Z7L9 614 aaPredicted RBP16.92■□□□□ 0.3
CPSF3-201ENST00000238112 ASB17Q8WXJ9 295 aa16.92■□□□□ 0.3
CPSF3-201ENST00000238112 OR8B4Q96RC9 309 aa16.92■□□□□ 0.3
CPSF3-201ENST00000238112 SLCO1B1Q9Y6L6 691 aa16.92■□□□□ 0.3
CPSF3-201ENST00000238112 TDRD6O60522 2096 aaKnown RBP16.92■□□□□ 0.3
CPSF3-201ENST00000238112 TRAV36DV7A0A075B6V5 113 aa16.92■□□□□ 0.3
CPSF3-201ENST00000238112 MCRIP1C9JLW8 97 aa16.92■□□□□ 0.3
CPSF3-201ENST00000238112 PLGP00747 810 aaPredicted RBP16.92■□□□□ 0.3
CPSF3-201ENST00000238112 BGLAPP02818 100 aa16.92■□□□□ 0.3
CPSF3-201ENST00000238112 AKAIN1P0CW23 69 aa16.92■□□□□ 0.3
CPSF3-201ENST00000238112 FASLGP48023 281 aa16.92■□□□□ 0.3
CPSF3-201ENST00000238112 KCNAB1Q14722 419 aa16.92■□□□□ 0.3
CPSF3-201ENST00000238112 NHLRC3Q5JS37 347 aa16.92■□□□□ 0.3
CPSF3-201ENST00000238112 YOD1Q5VVQ6 348 aaPredicted RBP16.92■□□□□ 0.3
CPSF3-201ENST00000238112 SLC36A1Q7Z2H8 476 aa16.92■□□□□ 0.3
CPSF3-201ENST00000238112 SLC38A6Q8IZM9 456 aa16.92■□□□□ 0.3
CPSF3-201ENST00000238112 ATOH1Q92858 354 aaPredicted RBP16.92■□□□□ 0.3
CPSF3-201ENST00000238112 SLC25A36Q96CQ1 311 aa16.92■□□□□ 0.3
CPSF3-201ENST00000238112 FOXN4Q96NZ1 517 aa16.92■□□□□ 0.3
CPSF3-201ENST00000238112 LANCL2Q9NS86 450 aa16.92■□□□□ 0.3
CPSF3-201ENST00000238112 KNL1Q8NG31 2342 aa16.91■□□□□ 0.3
CPSF3-201ENST00000238112 OR6A2O95222 327 aa16.91■□□□□ 0.3
CPSF3-201ENST00000238112 ITGA5P08648 1049 aa16.91■□□□□ 0.3
CPSF3-201ENST00000238112 FBXO45P0C2W1 286 aa16.91■□□□□ 0.3
CPSF3-201ENST00000238112 CFPP27918 469 aa16.91■□□□□ 0.3
CPSF3-201ENST00000238112 GFERP55789 205 aa16.91■□□□□ 0.3
CPSF3-201ENST00000238112 GUCA2AQ02747 115 aa16.91■□□□□ 0.3
CPSF3-201ENST00000238112 SLC17A1Q14916 467 aa16.91■□□□□ 0.3
CPSF3-201ENST00000238112 OTPQ5XKR4 325 aa16.91■□□□□ 0.3
CPSF3-201ENST00000238112 FDX2Q6P4F2 183 aa16.91■□□□□ 0.3
CPSF3-201ENST00000238112 MAMDC2Q7Z304 686 aaPredicted RBP16.91■□□□□ 0.3
CPSF3-201ENST00000238112 ADGRG3Q86Y34 549 aa16.91■□□□□ 0.3
CPSF3-201ENST00000238112 OR4D10Q8NGI6 311 aa16.91■□□□□ 0.3
CPSF3-201ENST00000238112 OR6N1Q8NGY5 312 aa16.91■□□□□ 0.3
CPSF3-201ENST00000238112 RBPMSQ93062 196 aaKnown RBP16.91■□□□□ 0.3
CPSF3-201ENST00000238112 TSLPQ969D9 159 aa16.91■□□□□ 0.3
CPSF3-201ENST00000238112 FAM3DQ96BQ1 224 aa16.91■□□□□ 0.3
CPSF3-201ENST00000238112 WDR89Q96FK6 387 aaPredicted RBP16.91■□□□□ 0.3
CPSF3-201ENST00000238112 OR1F2PQ96R84 312 aa16.91■□□□□ 0.3
CPSF3-201ENST00000238112 RTN4RQ9BZR6 473 aa16.91■□□□□ 0.3
CPSF3-201ENST00000238112 SZT2Q5T011 3432 aa16.91■□□□□ 0.3
CPSF3-201ENST00000238112 TMEM131Q92545 1883 aa16.91■□□□□ 0.3
CPSF3-201ENST00000238112 IGHV5-51A0A0C4DH38 117 aa16.91■□□□□ 0.3
CPSF3-201ENST00000238112 LOC100289279A0A1B0GTE1 492 aa16.91■□□□□ 0.3
CPSF3-201ENST00000238112 A0A1W2PPC4 97 aa16.91■□□□□ 0.3
CPSF3-201ENST00000238112 MEIS3P1A6NDR6 274 aa16.91■□□□□ 0.3
CPSF3-201ENST00000238112 PRSS3P35030 304 aa16.91■□□□□ 0.3
CPSF3-201ENST00000238112 TOMM34Q15785 309 aaPredicted RBP16.91■□□□□ 0.3
CPSF3-201ENST00000238112 C2orf76Q3KRA6 126 aa16.91■□□□□ 0.3
CPSF3-201ENST00000238112 C1QL3Q5VWW1 255 aa16.91■□□□□ 0.3
CPSF3-201ENST00000238112 SLC18B1Q6NT16 456 aa16.91■□□□□ 0.3
CPSF3-201ENST00000238112 OR5M1Q8NGP8 315 aa16.91■□□□□ 0.3
CPSF3-201ENST00000238112 PNPLA2Q96AD5 504 aa16.91■□□□□ 0.3
CPSF3-201ENST00000238112 LDHAL6BQ9BYZ2 381 aaPredicted RBP16.91■□□□□ 0.3
CPSF3-201ENST00000238112 OPN4Q9UHM6 478 aa16.91■□□□□ 0.3
CPSF3-201ENST00000238112 B9D1Q9UPM9 204 aa16.91■□□□□ 0.3
CPSF3-201ENST00000238112 MMACHCQ9Y4U1 282 aa16.91■□□□□ 0.3
CPSF3-201ENST00000238112 SLC17A2O00624 439 aa16.9■□□□□ 0.3
CPSF3-201ENST00000238112 ARPC5O15511 151 aa16.9■□□□□ 0.3
CPSF3-201ENST00000238112 SUSD5O60279 629 aa16.9■□□□□ 0.3
CPSF3-201ENST00000238112 RAD1O60671 282 aa16.9■□□□□ 0.3
CPSF3-201ENST00000238112 RGS11O94810 467 aa16.9■□□□□ 0.3
CPSF3-201ENST00000238112 KDM4BO94953 1096 aa16.9■□□□□ 0.3
CPSF3-201ENST00000238112 SPARCP09486 303 aa16.9■□□□□ 0.3
CPSF3-201ENST00000238112 SEC61A1P61619 476 aaKnown RBP16.9■□□□□ 0.3
CPSF3-201ENST00000238112 ELOCQ15369 112 aa16.9■□□□□ 0.3
CPSF3-201ENST00000238112 CSRP2Q16527 193 aa16.9■□□□□ 0.3
CPSF3-201ENST00000238112 MARCH3Q86UD3 253 aa16.9■□□□□ 0.3
CPSF3-201ENST00000238112 ZNF679Q8IYX0 411 aa16.9■□□□□ 0.3
CPSF3-201ENST00000238112 FAM160A2Q8N612 972 aaPredicted RBP16.9■□□□□ 0.3
CPSF3-201ENST00000238112 SREK1IP1Q8N9Q2 155 aaPredicted RBP16.9■□□□□ 0.3
CPSF3-201ENST00000238112 OR51S1Q8NGJ8 323 aa16.9■□□□□ 0.3
CPSF3-201ENST00000238112 ADIPOR1Q96A54 375 aa16.9■□□□□ 0.3
CPSF3-201ENST00000238112 NRSN2Q9GZP1 204 aa16.9■□□□□ 0.3
CPSF3-201ENST00000238112 MSRAQ9UJ68 235 aa16.9■□□□□ 0.3
CPSF3-201ENST00000238112 SLC22A13Q9Y226 551 aa16.9■□□□□ 0.3
CPSF3-201ENST00000238112 PRSS37A4D1T9 235 aa16.9■□□□□ 0.3
CPSF3-201ENST00000238112 CDC14CA4D256 554 aa16.9■□□□□ 0.3
CPSF3-201ENST00000238112 LILRA5A6NI73 299 aa16.9■□□□□ 0.3
CPSF3-201ENST00000238112 SIX6O95475 246 aa16.9■□□□□ 0.3
CPSF3-201ENST00000238112 CSF2RBP32927 897 aa16.9■□□□□ 0.3
CPSF3-201ENST00000238112 MFSD13AQ14CX5 517 aa16.9■□□□□ 0.3
CPSF3-201ENST00000238112 NKAIN2Q5VXU1 208 aa16.9■□□□□ 0.3
CPSF3-201ENST00000238112 HLA-DQA1Q5Y7H0 255 aa16.9■□□□□ 0.3
CPSF3-201ENST00000238112 TMEM65Q6PI78 240 aa16.9■□□□□ 0.3
CPSF3-201ENST00000238112 TTLL10Q6ZVT0 673 aa16.9■□□□□ 0.3
CPSF3-201ENST00000238112 KRT77Q7Z794 578 aa16.9■□□□□ 0.3
CPSF3-201ENST00000238112 TNFAIP8L1Q8WVP5 186 aa16.9■□□□□ 0.3
CPSF3-201ENST00000238112 ATG5Q9H1Y0 275 aa16.9■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms