RNA–Protein interactions for RNA: ENST00000641996.1

SCN1A-221, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 12,903 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-221ENST00000641996 YDJCA8MPS7 323 aa3.28□□□□□ -1.88
SCN1A-221ENST00000641996 H3BML4 177 aa3.28□□□□□ -1.88
SCN1A-221ENST00000641996 BMP3P12645 472 aa3.28□□□□□ -1.88
SCN1A-221ENST00000641996 PSMA1P25786 263 aaKnown RBP3.28□□□□□ -1.88
SCN1A-221ENST00000641996 SSTR5P35346 364 aa3.28□□□□□ -1.88
SCN1A-221ENST00000641996 HTR5AP47898 357 aa3.28□□□□□ -1.88
SCN1A-221ENST00000641996 GLRBP48167 497 aa3.28□□□□□ -1.88
SCN1A-221ENST00000641996 ECH1Q13011 328 aa3.28□□□□□ -1.88
SCN1A-221ENST00000641996 VN1R5Q7Z5H4 357 aa3.28□□□□□ -1.88
SCN1A-221ENST00000641996 TMEM156Q8N614 296 aa3.28□□□□□ -1.88
SCN1A-221ENST00000641996 ZNF502Q8TBZ5 544 aa3.28□□□□□ -1.88
SCN1A-221ENST00000641996 SLC45A3Q96JT2 553 aa3.28□□□□□ -1.88
SCN1A-221ENST00000641996 CIB3Q96Q77 187 aaPredicted RBP3.28□□□□□ -1.88
SCN1A-221ENST00000641996 UBQLN3Q9H347 655 aa3.28□□□□□ -1.88
SCN1A-221ENST00000641996 PATZ1Q9HBE1 687 aaKnown RBP3.28□□□□□ -1.88
SCN1A-221ENST00000641996 FZD4Q9ULV1 537 aa3.28□□□□□ -1.88
SCN1A-221ENST00000641996 USP22Q9UPT9 525 aa3.28□□□□□ -1.88
SCN1A-221ENST00000641996 A0A0G2JLL6 359 aaPredicted RBP3.28□□□□□ -1.88
SCN1A-221ENST00000641996 ZNF205O95201 554 aa3.28□□□□□ -1.88
SCN1A-221ENST00000641996 ISG15P05161 165 aa3.28□□□□□ -1.88
SCN1A-221ENST00000641996 ACSM2AQ08AH3 577 aa3.28□□□□□ -1.88
SCN1A-221ENST00000641996 ACSM2BQ68CK6 577 aa3.28□□□□□ -1.88
SCN1A-221ENST00000641996 OTOP2Q7RTS6 562 aa3.28□□□□□ -1.88
SCN1A-221ENST00000641996 PRRT2Q7Z6L0 340 aaPredicted RBP3.28□□□□□ -1.88
SCN1A-221ENST00000641996 OR9A4Q8NGU2 314 aa3.28□□□□□ -1.88
SCN1A-221ENST00000641996 OR2G3Q8NGZ4 309 aa3.28□□□□□ -1.88
SCN1A-221ENST00000641996 ZNF512Q96ME7 567 aaPredicted RBP3.28□□□□□ -1.88
SCN1A-221ENST00000641996 SPACA5Q96QH8 159 aa3.28□□□□□ -1.88
SCN1A-221ENST00000641996 CDCP1Q9H5V8 836 aa3.28□□□□□ -1.88
SCN1A-221ENST00000641996 RNF6Q9Y252 685 aa3.28□□□□□ -1.88
SCN1A-221ENST00000641996 CSDC2Q9Y534 153 aaKnown RBP3.28□□□□□ -1.88
SCN1A-221ENST00000641996 ANKRD36A6QL64 1941 aa3.28□□□□□ -1.88
SCN1A-221ENST00000641996 NUP160Q12769 1436 aa3.28□□□□□ -1.88
SCN1A-221ENST00000641996 HACD1B0YJ81 288 aa3.28□□□□□ -1.88
SCN1A-221ENST00000641996 STK16O75716 305 aa3.28□□□□□ -1.88
SCN1A-221ENST00000641996 CD14P08571 375 aa3.28□□□□□ -1.88
SCN1A-221ENST00000641996 PAEPP09466 180 aa3.28□□□□□ -1.88
SCN1A-221ENST00000641996 GOT1P17174 413 aa3.28□□□□□ -1.88
SCN1A-221ENST00000641996 EEF1AKMT2Q5JPI9 291 aaKnown RBP3.28□□□□□ -1.88
SCN1A-221ENST00000641996 BTNL3Q6UXE8 466 aa3.28□□□□□ -1.88
SCN1A-221ENST00000641996 SLC24A5Q71RS6 500 aa3.28□□□□□ -1.88
SCN1A-221ENST00000641996 SAMD12Q8N8I0 201 aa3.28□□□□□ -1.88
SCN1A-221ENST00000641996 NPEPL1Q8NDH3 523 aa3.28□□□□□ -1.88
SCN1A-221ENST00000641996 ARRDC2Q8TBH0 407 aa3.28□□□□□ -1.88
SCN1A-221ENST00000641996 SLC7A6Q92536 515 aa3.28□□□□□ -1.88
SCN1A-221ENST00000641996 OR7D2Q96RA2 312 aa3.28□□□□□ -1.88
SCN1A-221ENST00000641996 PITX2Q99697 317 aa3.28□□□□□ -1.88
SCN1A-221ENST00000641996 INPP5KQ9BT40 448 aa3.28□□□□□ -1.88
SCN1A-221ENST00000641996 SYT4Q9H2B2 425 aa3.28□□□□□ -1.88
SCN1A-221ENST00000641996 ASB6Q9NWX5 421 aa3.28□□□□□ -1.88
SCN1A-221ENST00000641996 MRPS17Q9Y2R5 130 aaKnown RBP3.28□□□□□ -1.88
SCN1A-221ENST00000641996 FER1L6Q2WGJ9 1857 aa3.28□□□□□ -1.89
SCN1A-221ENST00000641996 HIDE1A8MVS5 230 aa3.28□□□□□ -1.89
SCN1A-221ENST00000641996 CFHP08603 1231 aa3.28□□□□□ -1.89
SCN1A-221ENST00000641996 OR4Q2P0C623 313 aa3.28□□□□□ -1.89
SCN1A-221ENST00000641996 ESDP10768 282 aa3.28□□□□□ -1.89
SCN1A-221ENST00000641996 RPL10P27635 214 aaKnown RBP3.28□□□□□ -1.89
SCN1A-221ENST00000641996 SDHAP31040 664 aa3.28□□□□□ -1.89
SCN1A-221ENST00000641996 UCP3P55916 312 aa3.28□□□□□ -1.89
SCN1A-221ENST00000641996 USP17L6PQ6QN14 398 aa3.28□□□□□ -1.89
SCN1A-221ENST00000641996 OR51A4Q8NGJ6 313 aa3.28□□□□□ -1.89
SCN1A-221ENST00000641996 IGDCC4Q8TDY8 1250 aa3.28□□□□□ -1.89
SCN1A-221ENST00000641996 ADTRPQ96IZ2 230 aa3.28□□□□□ -1.89
SCN1A-221ENST00000641996 MEPEQ9NQ76 525 aaPredicted RBP3.28□□□□□ -1.89
SCN1A-221ENST00000641996 C2orf42Q9NWW7 574 aa3.28□□□□□ -1.89
SCN1A-221ENST00000641996 TRAPPC4Q9Y296 219 aa3.28□□□□□ -1.89
SCN1A-221ENST00000641996 ZNF780BQ9Y6R6 833 aa3.28□□□□□ -1.89
SCN1A-221ENST00000641996 KIAA0232Q92628 1395 aa3.27□□□□□ -1.89
SCN1A-221ENST00000641996 INMT-MINDY4F8WBC2 141 aa3.27□□□□□ -1.89
SCN1A-221ENST00000641996 F3P13726 295 aa3.27□□□□□ -1.89
SCN1A-221ENST00000641996 TMEM128Q5BJH2 165 aa3.27□□□□□ -1.89
SCN1A-221ENST00000641996 DNLZQ5SXM8 178 aa3.27□□□□□ -1.89
SCN1A-221ENST00000641996 OR10V1Q8NGI7 309 aa3.27□□□□□ -1.89
SCN1A-221ENST00000641996 LCORQ96JN0 433 aaPredicted RBP3.27□□□□□ -1.89
SCN1A-221ENST00000641996 GPR78Q96P69 363 aa3.27□□□□□ -1.89
SCN1A-221ENST00000641996 HDAC8Q9BY41 377 aa3.27□□□□□ -1.89
SCN1A-221ENST00000641996 ACKR4Q9NPB9 350 aa3.27□□□□□ -1.89
SCN1A-221ENST00000641996 GPATCH2LQ9NWQ4 482 aa3.27□□□□□ -1.89
SCN1A-221ENST00000641996 INSL6Q9Y581 213 aa3.27□□□□□ -1.89
SCN1A-221ENST00000641996 GPR31O00270 319 aa3.27□□□□□ -1.89
SCN1A-221ENST00000641996 SYT5O00445 386 aa3.27□□□□□ -1.89
SCN1A-221ENST00000641996 F13BP05160 661 aa3.27□□□□□ -1.89
SCN1A-221ENST00000641996 SDC2P34741 201 aa3.27□□□□□ -1.89
SCN1A-221ENST00000641996 MTCP1P56278 107 aa3.27□□□□□ -1.89
SCN1A-221ENST00000641996 TAS2R30P59541 319 aa3.27□□□□□ -1.89
SCN1A-221ENST00000641996 SNRPNP63162 240 aaKnown RBP3.27□□□□□ -1.89
SCN1A-221ENST00000641996 IL10RBQ08334 325 aa3.27□□□□□ -1.89
SCN1A-221ENST00000641996 ADPRMQ3LIE5 342 aa3.27□□□□□ -1.89
SCN1A-221ENST00000641996 BCL2L15Q5TBC7 163 aa3.27□□□□□ -1.89
SCN1A-221ENST00000641996 SLC16A14Q7RTX9 510 aa3.27□□□□□ -1.89
SCN1A-221ENST00000641996 PHYKPLQ8IUZ5 450 aa3.27□□□□□ -1.89
SCN1A-221ENST00000641996 OR56B4Q8NH76 319 aa3.27□□□□□ -1.89
SCN1A-221ENST00000641996 SMAP2Q8WU79 429 aaPredicted RBP3.27□□□□□ -1.89
SCN1A-221ENST00000641996 SLC35E1Q96K37 410 aa3.27□□□□□ -1.89
SCN1A-221ENST00000641996 SPAG8Q99932 426 aaPredicted RBP3.27□□□□□ -1.89
SCN1A-221ENST00000641996 LYRM4Q9HD34 91 aa3.27□□□□□ -1.89
SCN1A-221ENST00000641996 SLC2A6Q9UGQ3 507 aa3.27□□□□□ -1.89
SCN1A-221ENST00000641996 A0A0J9YW62 118 aa3.27□□□□□ -1.89
SCN1A-221ENST00000641996 F5H768 121 aa3.27□□□□□ -1.89
SCN1A-221ENST00000641996 PYCARD-AS1I3L0S3 204 aa3.27□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms