RNA–Protein interactions for RNA: ENST00000637578.1

CLN3-260, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,577 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-260ENST00000637578 ATP23Q9Y6H3 246 aa16.74■□□□□ 0.27
CLN3-260ENST00000637578 NIPBLQ6KC79 2804 aaeCLIP16.73■□□□□ 0.27
CLN3-260ENST00000637578 ZNF503-AS2A6NEH8 195 aa16.73■□□□□ 0.27
CLN3-260ENST00000637578 C11orf98E9PRG8 122 aa16.73■□□□□ 0.27
CLN3-260ENST00000637578 PIP5K1CO60331 668 aa16.73■□□□□ 0.27
CLN3-260ENST00000637578 NDUFS7O75251 213 aa16.73■□□□□ 0.27
CLN3-260ENST00000637578 OR6A2O95222 327 aa16.73■□□□□ 0.27
CLN3-260ENST00000637578 TSPAN19P0C672 248 aa16.73■□□□□ 0.27
CLN3-260ENST00000637578 APOBEC3AP31941 199 aaPredicted RBP16.73■□□□□ 0.27
CLN3-260ENST00000637578 TUBA1BP68363 451 aa16.73■□□□□ 0.27
CLN3-260ENST00000637578 TUBA4AP68366 448 aa16.73■□□□□ 0.27
CLN3-260ENST00000637578 FGD3Q5JSP0 725 aa16.73■□□□□ 0.27
CLN3-260ENST00000637578 TUBA1AQ71U36 451 aa16.73■□□□□ 0.27
CLN3-260ENST00000637578 SLC35D2Q76EJ3 337 aa16.73■□□□□ 0.27
CLN3-260ENST00000637578 OR52J3Q8NH60 311 aa16.73■□□□□ 0.27
CLN3-260ENST00000637578 SLC7A13Q8TCU3 470 aa16.73■□□□□ 0.27
CLN3-260ENST00000637578 TMEM54Q969K7 222 aa16.73■□□□□ 0.27
CLN3-260ENST00000637578 ANKRD19PQ9H560 264 aa16.73■□□□□ 0.27
CLN3-260ENST00000637578 B3GAT2Q9NPZ5 323 aa16.73■□□□□ 0.27
CLN3-260ENST00000637578 B3GNT2Q9NY97 397 aa16.73■□□□□ 0.27
CLN3-260ENST00000637578 GDF2Q9UK05 429 aaPredicted RBP16.73■□□□□ 0.27
CLN3-260ENST00000637578 A0A087WUU8 490 aa16.72■□□□□ 0.27
CLN3-260ENST00000637578 TRBV4-1A0A0J9YWV2 114 aa16.72■□□□□ 0.27
CLN3-260ENST00000637578 HIST1H2ABP04908 130 aa16.72■□□□□ 0.27
CLN3-260ENST00000637578 CECR9P0C854 216 aa16.72■□□□□ 0.27
CLN3-260ENST00000637578 RRM2P31350 389 aa16.72■□□□□ 0.27
CLN3-260ENST00000637578 BIDP55957 195 aa16.72■□□□□ 0.27
CLN3-260ENST00000637578 NAAAQ02083 359 aa16.72■□□□□ 0.27
CLN3-260ENST00000637578 TNK1Q13470 666 aa16.72■□□□□ 0.27
CLN3-260ENST00000637578 CLEC12BQ2HXU8 276 aa16.72■□□□□ 0.27
CLN3-260ENST00000637578 TBPL2Q6SJ96 375 aa16.72■□□□□ 0.27
CLN3-260ENST00000637578 CLEC9AQ6UXN8 241 aa16.72■□□□□ 0.27
CLN3-260ENST00000637578 HIST3H2AQ7L7L0 130 aa16.72■□□□□ 0.27
CLN3-260ENST00000637578 ACOT11Q8WXI4 607 aaPredicted RBP16.72■□□□□ 0.27
CLN3-260ENST00000637578 HIST1H2ACQ93077 130 aa16.72■□□□□ 0.27
CLN3-260ENST00000637578 SLCO4A1Q96BD0 722 aa16.72■□□□□ 0.27
CLN3-260ENST00000637578 RAB3IPQ96QF0 476 aaPredicted RBP16.72■□□□□ 0.27
CLN3-260ENST00000637578 BARX1Q9HBU1 254 aaPredicted RBP16.72■□□□□ 0.27
CLN3-260ENST00000637578 C20orf141Q9NUB4 165 aa16.72■□□□□ 0.27
CLN3-260ENST00000637578 MED31Q9Y3C7 131 aa16.72■□□□□ 0.27
CLN3-260ENST00000637578 ERICH4A6NGS2 130 aa16.72■□□□□ 0.27
CLN3-260ENST00000637578 H7C417 338 aa16.72■□□□□ 0.27
CLN3-260ENST00000637578 RNF13O43567 381 aa16.72■□□□□ 0.27
CLN3-260ENST00000637578 SERPINI2O75830 405 aa16.72■□□□□ 0.27
CLN3-260ENST00000637578 OR7A10O76100 309 aa16.72■□□□□ 0.27
CLN3-260ENST00000637578 LY6G6DO95868 133 aa16.72■□□□□ 0.27
CLN3-260ENST00000637578 CRYAAP02489 173 aa16.72■□□□□ 0.27
CLN3-260ENST00000637578 HEXAP06865 529 aa16.72■□□□□ 0.27
CLN3-260ENST00000637578 ARR3P36575 388 aa16.72■□□□□ 0.27
CLN3-260ENST00000637578 KPNB1Q14974 876 aaKnown RBP16.72■□□□□ 0.27
CLN3-260ENST00000637578 SWI5Q1ZZU3 235 aa16.72■□□□□ 0.27
CLN3-260ENST00000637578 MST1LQ2TV78 715 aa16.72■□□□□ 0.27
CLN3-260ENST00000637578 PODNL1Q6PEZ8 512 aa16.72■□□□□ 0.27
CLN3-260ENST00000637578 ZNF730Q6ZMV8 503 aa16.72■□□□□ 0.27
CLN3-260ENST00000637578 NRMQ8IXM6 262 aa16.72■□□□□ 0.27
CLN3-260ENST00000637578 OR6N1Q8NGY5 312 aa16.72■□□□□ 0.27
CLN3-260ENST00000637578 SLC25A44Q96H78 314 aaPredicted RBP16.72■□□□□ 0.27
CLN3-260ENST00000637578 FUZQ9BT04 418 aa16.72■□□□□ 0.27
CLN3-260ENST00000637578 CACNG6Q9BXT2 260 aa16.72■□□□□ 0.27
CLN3-260ENST00000637578 ULBP2Q9BZM5 246 aa16.72■□□□□ 0.27
CLN3-260ENST00000637578 SEC61A2Q9H9S3 476 aa16.72■□□□□ 0.27
CLN3-260ENST00000637578 HTR3EA5X5Y0 456 aa16.71■□□□□ 0.27
CLN3-260ENST00000637578 FKBP6O75344 327 aa16.71■□□□□ 0.27
CLN3-260ENST00000637578 GADD45GO95257 159 aa16.71■□□□□ 0.27
CLN3-260ENST00000637578 HOXB4P17483 251 aaPredicted RBP16.71■□□□□ 0.27
CLN3-260ENST00000637578 HOXB6P17509 224 aaKnown RBP16.71■□□□□ 0.27
CLN3-260ENST00000637578 FUT1P19526 365 aa16.71■□□□□ 0.27
CLN3-260ENST00000637578 ACVR1BP36896 505 aa16.71■□□□□ 0.27
CLN3-260ENST00000637578 CSNK1A1P48729 337 aa16.71■□□□□ 0.27
CLN3-260ENST00000637578 SMIM11AP58511 58 aa16.71■□□□□ 0.27
CLN3-260ENST00000637578 SEC23BQ15437 767 aa16.71■□□□□ 0.27
CLN3-260ENST00000637578 OR2T5Q6IEZ7 315 aa16.71■□□□□ 0.27
CLN3-260ENST00000637578 MYPOPQ86VE0 399 aaPredicted RBP16.71■□□□□ 0.27
CLN3-260ENST00000637578 PAPD5Q8NDF8 572 aaKnown RBP16.71■□□□□ 0.27
CLN3-260ENST00000637578 OR2T29Q8NH02 315 aa16.71■□□□□ 0.27
CLN3-260ENST00000637578 SGTBQ96EQ0 304 aa16.71■□□□□ 0.27
CLN3-260ENST00000637578 POM121Q96HA1 1249 aa16.71■□□□□ 0.27
CLN3-260ENST00000637578 ZNF75AQ96N20 296 aa16.71■□□□□ 0.27
CLN3-260ENST00000637578 GLTPQ9NZD2 209 aa16.71■□□□□ 0.27
CLN3-260ENST00000637578 ZANQ9Y493 2812 aa16.7■□□□□ 0.26
CLN3-260ENST00000637578 BLOC1S5-TXNDC5H3BN57 136 aa16.7■□□□□ 0.26
CLN3-260ENST00000637578 SMAD7O15105 426 aaKnown RBP16.7■□□□□ 0.26
CLN3-260ENST00000637578 SEC14L2O76054 403 aa16.7■□□□□ 0.26
CLN3-260ENST00000637578 CELA3BP08861 270 aa16.7■□□□□ 0.26
CLN3-260ENST00000637578 CALCRP30988 508 aa16.7■□□□□ 0.26
CLN3-260ENST00000637578 ACTR3P61158 418 aa16.7■□□□□ 0.26
CLN3-260ENST00000637578 RPL18Q07020 188 aaKnown RBP16.7■□□□□ 0.26
CLN3-260ENST00000637578 HIST3H3Q16695 136 aa16.7■□□□□ 0.26
CLN3-260ENST00000637578 LRFN4Q6PJG9 635 aa16.7■□□□□ 0.26
CLN3-260ENST00000637578 MBOAT2Q6ZWT7 520 aa16.7■□□□□ 0.26
CLN3-260ENST00000637578 NANOGNBQ7Z5D8 188 aa16.7■□□□□ 0.26
CLN3-260ENST00000637578 MDP1Q86V88 176 aa16.7■□□□□ 0.26
CLN3-260ENST00000637578 ZNF566Q969W8 418 aa16.7■□□□□ 0.26
CLN3-260ENST00000637578 FOXB1Q99853 325 aa16.7■□□□□ 0.26
CLN3-260ENST00000637578 KCNS3Q9BQ31 491 aa16.7■□□□□ 0.26
CLN3-260ENST00000637578 VNN3Q9NY84 501 aa16.7■□□□□ 0.26
CLN3-260ENST00000637578 ZNF224Q9NZL3 707 aa16.7■□□□□ 0.26
CLN3-260ENST00000637578 POFUT2Q9Y2G5 429 aa16.7■□□□□ 0.26
CLN3-260ENST00000637578 LYVE1Q9Y5Y7 322 aa16.7■□□□□ 0.26
CLN3-260ENST00000637578 ANKRD65E5RJM6 399 aa16.69■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 48.3 ms