RNA–Protein interactions for RNA: ENST00000637551.2

CLN3-259, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,083 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-259ENST00000637551 OR52N5Q8NH56 324 aa15.98■□□□□ 0.15
CLN3-259ENST00000637551 MOSPD2Q8NHP6 518 aa15.98■□□□□ 0.15
CLN3-259ENST00000637551 ZNF519Q8TB69 540 aa15.98■□□□□ 0.15
CLN3-259ENST00000637551 PIGTQ969N2 578 aa15.98■□□□□ 0.15
CLN3-259ENST00000637551 NMD3Q96D46 503 aaKnown RBP15.98■□□□□ 0.15
CLN3-259ENST00000637551 FAM46AQ96IP4 442 aaKnown RBP15.98■□□□□ 0.15
CLN3-259ENST00000637551 RSRC1Q96IZ7 334 aaKnown RBP15.98■□□□□ 0.15
CLN3-259ENST00000637551 SNX18Q96RF0 628 aa15.98■□□□□ 0.15
CLN3-259ENST00000637551 WACQ9BTA9 647 aa15.98■□□□□ 0.15
CLN3-259ENST00000637551 KATNB1Q9BVA0 655 aa15.98■□□□□ 0.15
CLN3-259ENST00000637551 REEP1Q9H902 201 aa15.98■□□□□ 0.15
CLN3-259ENST00000637551 NRIP3Q9NQ35 241 aa15.98■□□□□ 0.15
CLN3-259ENST00000637551 NPAP1Q9NZP6 1156 aa15.98■□□□□ 0.15
CLN3-259ENST00000637551 SLC7A8Q9UHI5 535 aa15.98■□□□□ 0.15
CLN3-259ENST00000637551 POFUT2Q9Y2G5 429 aa15.98■□□□□ 0.15
CLN3-259ENST00000637551 TRAV27A0A087WT01 109 aa15.97■□□□□ 0.15
CLN3-259ENST00000637551 A0A1W2PPR1 153 aa15.97■□□□□ 0.15
CLN3-259ENST00000637551 IMPA2O14732 288 aa15.97■□□□□ 0.15
CLN3-259ENST00000637551 DHHO43323 396 aa15.97■□□□□ 0.15
CLN3-259ENST00000637551 IDH3BO43837 385 aa15.97■□□□□ 0.15
CLN3-259ENST00000637551 OR10H3O60404 316 aa15.97■□□□□ 0.15
CLN3-259ENST00000637551 SERPINI2O75830 405 aa15.97■□□□□ 0.15
CLN3-259ENST00000637551 DIRAS1O95057 198 aa15.97■□□□□ 0.15
CLN3-259ENST00000637551 FARS2O95363 451 aaKnown RBP15.97■□□□□ 0.15
CLN3-259ENST00000637551 TXNDC12O95881 172 aa15.97■□□□□ 0.15
CLN3-259ENST00000637551 CD40P25942 277 aa15.97■□□□□ 0.15
CLN3-259ENST00000637551 GSSP48637 474 aa15.97■□□□□ 0.15
CLN3-259ENST00000637551 ZNF84P51523 738 aa15.97■□□□□ 0.15
CLN3-259ENST00000637551 CTXN1P60606 82 aa15.97■□□□□ 0.15
CLN3-259ENST00000637551 TSPAN31Q12999 210 aa15.97■□□□□ 0.15
CLN3-259ENST00000637551 LAPTM4AQ15012 233 aa15.97■□□□□ 0.15
CLN3-259ENST00000637551 SMARCD3Q6STE5 483 aa15.97■□□□□ 0.15
CLN3-259ENST00000637551 FAM122BQ7Z309 247 aa15.97■□□□□ 0.15
CLN3-259ENST00000637551 ZER1Q7Z7L7 766 aa15.97■□□□□ 0.15
CLN3-259ENST00000637551 DEPDC4Q8N2C3 294 aa15.97■□□□□ 0.15
CLN3-259ENST00000637551 CLDN22Q8N7P3 220 aa15.97■□□□□ 0.15
CLN3-259ENST00000637551 OR4C15Q8NGM1 316 aa15.97■□□□□ 0.15
CLN3-259ENST00000637551 OR51A7Q8NH64 312 aa15.97■□□□□ 0.15
CLN3-259ENST00000637551 HS3ST6Q96QI5 342 aa15.97■□□□□ 0.15
CLN3-259ENST00000637551 TNFRSF13CQ96RJ3 184 aa15.97■□□□□ 0.15
CLN3-259ENST00000637551 FAIMQ9NVQ4 179 aa15.97■□□□□ 0.15
CLN3-259ENST00000637551 BEX4Q9NWD9 120 aaPredicted RBP15.97■□□□□ 0.15
CLN3-259ENST00000637551 ARID1AO14497 2285 aa15.96■□□□□ 0.15
CLN3-259ENST00000637551 DPRXA6NFQ7 191 aa15.96■□□□□ 0.15
CLN3-259ENST00000637551 UNC119BA6NIH7 251 aa15.96■□□□□ 0.15
CLN3-259ENST00000637551 TNFRSF11BO00300 401 aa15.96■□□□□ 0.15
CLN3-259ENST00000637551 ARPC3O15145 178 aa15.96■□□□□ 0.15
CLN3-259ENST00000637551 TRMUO75648 421 aaKnown RBP15.96■□□□□ 0.15
CLN3-259ENST00000637551 UBL3O95164 117 aa15.96■□□□□ 0.15
CLN3-259ENST00000637551 ATE1O95260 518 aa15.96■□□□□ 0.15
CLN3-259ENST00000637551 OR8G3PP0DMU2 310 aa15.96■□□□□ 0.15
CLN3-259ENST00000637551 CBR1P16152 277 aa15.96■□□□□ 0.15
CLN3-259ENST00000637551 NPR2P20594 1047 aa15.96■□□□□ 0.15
CLN3-259ENST00000637551 SDHAP31040 664 aa15.96■□□□□ 0.15
CLN3-259ENST00000637551 MRPS34P82930 218 aaKnown RBP15.96■□□□□ 0.15
CLN3-259ENST00000637551 LGALS3BPQ08380 585 aa15.96■□□□□ 0.15
CLN3-259ENST00000637551 HIKESHIQ53FT3 197 aa15.96■□□□□ 0.15
CLN3-259ENST00000637551 PHYHD1Q5SRE7 291 aa15.96■□□□□ 0.15
CLN3-259ENST00000637551 C9orf135Q5VTT2 229 aa15.96■□□□□ 0.15
CLN3-259ENST00000637551 ZNF770Q6IQ21 691 aaPredicted RBP15.96■□□□□ 0.15
CLN3-259ENST00000637551 LRFN4Q6PJG9 635 aa15.96■□□□□ 0.15
CLN3-259ENST00000637551 ZNF813Q6ZN06 617 aa15.96■□□□□ 0.15
CLN3-259ENST00000637551 LSRQ86X29 649 aaPredicted RBP15.96■□□□□ 0.15
CLN3-259ENST00000637551 OR52J3Q8NH60 311 aa15.96■□□□□ 0.15
CLN3-259ENST00000637551 GNPDA2Q8TDQ7 276 aa15.96■□□□□ 0.15
CLN3-259ENST00000637551 FBXW5Q969U6 566 aa15.96■□□□□ 0.15
CLN3-259ENST00000637551 SLC38A2Q96QD8 506 aa15.96■□□□□ 0.15
CLN3-259ENST00000637551 RBP7Q96R05 134 aa15.96■□□□□ 0.15
CLN3-259ENST00000637551 FOXC2Q99958 501 aa15.96■□□□□ 0.15
CLN3-259ENST00000637551 DGCR6LQ9BY27 220 aa15.96■□□□□ 0.15
CLN3-259ENST00000637551 CXXC4Q9H2H0 198 aa15.96■□□□□ 0.15
CLN3-259ENST00000637551 TMEM38BQ9NVV0 291 aa15.96■□□□□ 0.15
CLN3-259ENST00000637551 GRHPRQ9UBQ7 328 aa15.96■□□□□ 0.15
CLN3-259ENST00000637551 PRRC2AP48634 2157 aaKnown RBP15.96■□□□□ 0.14
CLN3-259ENST00000637551 XKRYO14609 159 aa15.95■□□□□ 0.14
CLN3-259ENST00000637551 QDPRP09417 244 aa15.95■□□□□ 0.14
CLN3-259ENST00000637551 PAX1P15863 534 aa15.95■□□□□ 0.14
CLN3-259ENST00000637551 GSTM3P21266 225 aa15.95■□□□□ 0.14
CLN3-259ENST00000637551 RPL4P36578 427 aaKnown RBP15.95■□□□□ 0.14
CLN3-259ENST00000637551 RPS6KA3P51812 740 aa15.95■□□□□ 0.14
CLN3-259ENST00000637551 MELKQ14680 651 aa15.95■□□□□ 0.14
CLN3-259ENST00000637551 ZNF672Q499Z4 452 aaPredicted RBP15.95■□□□□ 0.14
CLN3-259ENST00000637551 CARD17Q5XLA6 110 aa15.95■□□□□ 0.14
CLN3-259ENST00000637551 CD300LDQ6UXZ3 194 aa15.95■□□□□ 0.14
CLN3-259ENST00000637551 ASRGL1Q7L266 308 aa15.95■□□□□ 0.14
CLN3-259ENST00000637551 LRRC75A-AS1Q8N1F1 130 aa15.95■□□□□ 0.14
CLN3-259ENST00000637551 CANT1Q8WVQ1 401 aa15.95■□□□□ 0.14
CLN3-259ENST00000637551 IGFBPL1Q8WX77 278 aa15.95■□□□□ 0.14
CLN3-259ENST00000637551 MCHR2Q969V1 340 aa15.95■□□□□ 0.14
CLN3-259ENST00000637551 CHID1Q9BWS9 393 aa15.95■□□□□ 0.14
CLN3-259ENST00000637551 C1orf198Q9H425 327 aa15.95■□□□□ 0.14
CLN3-259ENST00000637551 CCM2LQ9NUG4 571 aaPredicted RBP15.95■□□□□ 0.14
CLN3-259ENST00000637551 B3GNT2Q9NY97 397 aa15.95■□□□□ 0.14
CLN3-259ENST00000637551 FBXO9Q9UK97 447 aaPredicted RBP15.95■□□□□ 0.14
CLN3-259ENST00000637551 SAMHD1Q9Y3Z3 626 aaKnown RBP15.95■□□□□ 0.14
CLN3-259ENST00000637551 SHISA9B4DS77 424 aa15.94■□□□□ 0.14
CLN3-259ENST00000637551 EBAG9O00559 213 aa15.94■□□□□ 0.14
CLN3-259ENST00000637551 ABCD4O14678 606 aa15.94■□□□□ 0.14
CLN3-259ENST00000637551 CCNB2O95067 398 aa15.94■□□□□ 0.14
CLN3-259ENST00000637551 HOXB4P17483 251 aaPredicted RBP15.94■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms