RNA–Protein interactions for RNA: ENST00000631023.2

CLN3-240, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-240ENST00000631023 RSRC1Q96IZ7 334 aaKnown RBP18.08■□□□□ 0.49
CLN3-240ENST00000631023 RBP7Q96R05 134 aa18.08■□□□□ 0.49
CLN3-240ENST00000631023 KATNB1Q9BVA0 655 aa18.08■□□□□ 0.49
CLN3-240ENST00000631023 MMADHCQ9H3L0 296 aaPredicted RBP18.08■□□□□ 0.49
CLN3-240ENST00000631023 GRHPRQ9UBQ7 328 aa18.08■□□□□ 0.49
CLN3-240ENST00000631023 POMPQ9Y244 141 aa18.08■□□□□ 0.49
CLN3-240ENST00000631023 SIGLEC7Q9Y286 467 aa18.08■□□□□ 0.49
CLN3-240ENST00000631023 SEC14L2O76054 403 aa18.08■□□□□ 0.48
CLN3-240ENST00000631023 ZNF84P51523 738 aa18.08■□□□□ 0.48
CLN3-240ENST00000631023 CD47Q08722 323 aa18.08■□□□□ 0.48
CLN3-240ENST00000631023 C3orf36Q3SXR2 165 aa18.08■□□□□ 0.48
CLN3-240ENST00000631023 ZNF672Q499Z4 452 aaPredicted RBP18.08■□□□□ 0.48
CLN3-240ENST00000631023 OR2T5Q6IEZ7 315 aa18.08■□□□□ 0.48
CLN3-240ENST00000631023 ZER1Q7Z7L7 766 aa18.08■□□□□ 0.48
CLN3-240ENST00000631023 ZNF611Q8N823 705 aa18.08■□□□□ 0.48
CLN3-240ENST00000631023 KBTBD8Q8NFY9 601 aa18.08■□□□□ 0.48
CLN3-240ENST00000631023 OR2T29Q8NH02 315 aa18.08■□□□□ 0.48
CLN3-240ENST00000631023 NANOS1Q8WY41 292 aaKnown RBP18.08■□□□□ 0.48
CLN3-240ENST00000631023 FBXW5Q969U6 566 aa18.08■□□□□ 0.48
CLN3-240ENST00000631023 ALG12Q9BV10 488 aa18.08■□□□□ 0.48
CLN3-240ENST00000631023 POU2F3Q9UKI9 436 aa18.08■□□□□ 0.48
CLN3-240ENST00000631023 LYVE1Q9Y5Y7 322 aa18.08■□□□□ 0.48
CLN3-240ENST00000631023 PRRC2AP48634 2157 aaKnown RBP18.07■□□□□ 0.48
CLN3-240ENST00000631023 DHRS12A0PJE2 317 aa18.07■□□□□ 0.48
CLN3-240ENST00000631023 FARS2O95363 451 aaKnown RBP18.07■□□□□ 0.48
CLN3-240ENST00000631023 B4GALT1P15291 398 aa18.07■□□□□ 0.48
CLN3-240ENST00000631023 CD53P19397 219 aa18.07■□□□□ 0.48
CLN3-240ENST00000631023 ARR3P36575 388 aa18.07■□□□□ 0.48
CLN3-240ENST00000631023 ERVK-25P63136 954 aa18.07■□□□□ 0.48
CLN3-240ENST00000631023 TUBA1BP68363 451 aa18.07■□□□□ 0.48
CLN3-240ENST00000631023 TUBA4AP68366 448 aa18.07■□□□□ 0.48
CLN3-240ENST00000631023 THEM4Q5T1C6 240 aa18.07■□□□□ 0.48
CLN3-240ENST00000631023 TUBA1AQ71U36 451 aa18.07■□□□□ 0.48
CLN3-240ENST00000631023 SPATA24Q86W54 205 aa18.07■□□□□ 0.48
CLN3-240ENST00000631023 ARIH2OSQ8N7S6 290 aa18.07■□□□□ 0.48
CLN3-240ENST00000631023 GNPDA2Q8TDQ7 276 aa18.07■□□□□ 0.48
CLN3-240ENST00000631023 HDAC2Q92769 488 aaKnown RBP18.07■□□□□ 0.48
CLN3-240ENST00000631023 SLC38A2Q96QD8 506 aa18.07■□□□□ 0.48
CLN3-240ENST00000631023 TSPAN32Q96QS1 320 aa18.07■□□□□ 0.48
CLN3-240ENST00000631023 KCNK17Q96T54 332 aa18.07■□□□□ 0.48
CLN3-240ENST00000631023 CCL19Q99731 98 aa18.07■□□□□ 0.48
CLN3-240ENST00000631023 KCNS3Q9BQ31 491 aa18.07■□□□□ 0.48
CLN3-240ENST00000631023 REEP1Q9H902 201 aa18.07■□□□□ 0.48
CLN3-240ENST00000631023 SMURF2Q9HAU4 748 aa18.07■□□□□ 0.48
CLN3-240ENST00000631023 CRNNQ9UBG3 495 aaPredicted RBP18.07■□□□□ 0.48
CLN3-240ENST00000631023 USF3Q68DE3 2245 aa18.06■□□□□ 0.48
CLN3-240ENST00000631023 RTTNQ86VV8 2226 aa18.06■□□□□ 0.48
CLN3-240ENST00000631023 SHISA9B4DS77 424 aa18.06■□□□□ 0.48
CLN3-240ENST00000631023 XKRYO14609 159 aa18.06■□□□□ 0.48
CLN3-240ENST00000631023 OR8G3PP0DMU2 310 aa18.06■□□□□ 0.48
CLN3-240ENST00000631023 CBR1P16152 277 aa18.06■□□□□ 0.48
CLN3-240ENST00000631023 FPR3P25089 353 aa18.06■□□□□ 0.48
CLN3-240ENST00000631023 MYBPC1Q00872 1141 aa18.06■□□□□ 0.48
CLN3-240ENST00000631023 C1orf94Q6P1W5 598 aa18.06■□□□□ 0.48
CLN3-240ENST00000631023 SMARCD3Q6STE5 483 aa18.06■□□□□ 0.48
CLN3-240ENST00000631023 ADGRG5Q8IZF4 528 aa18.06■□□□□ 0.48
CLN3-240ENST00000631023 LILRB1Q8NHL6 650 aaPredicted RBP18.06■□□□□ 0.48
CLN3-240ENST00000631023 CANT1Q8WVQ1 401 aa18.06■□□□□ 0.48
CLN3-240ENST00000631023 FOXC2Q99958 501 aa18.06■□□□□ 0.48
CLN3-240ENST00000631023 CHID1Q9BWS9 393 aa18.06■□□□□ 0.48
CLN3-240ENST00000631023 TMEM38BQ9NVV0 291 aa18.06■□□□□ 0.48
CLN3-240ENST00000631023 CISD1Q9NZ45 108 aaKnown RBP18.06■□□□□ 0.48
CLN3-240ENST00000631023 SLC7A8Q9UHI5 535 aa18.06■□□□□ 0.48
CLN3-240ENST00000631023 MGRN1O60291 552 aa18.05■□□□□ 0.48
CLN3-240ENST00000631023 CD79AP11912 226 aa18.05■□□□□ 0.48
CLN3-240ENST00000631023 ZNF133P52736 654 aaPredicted RBP18.05■□□□□ 0.48
CLN3-240ENST00000631023 ART1P52961 327 aa18.05■□□□□ 0.48
CLN3-240ENST00000631023 CDH11P55287 796 aa18.05■□□□□ 0.48
CLN3-240ENST00000631023 GK3PQ14409 553 aa18.05■□□□□ 0.48
CLN3-240ENST00000631023 DEFB113Q30KQ7 82 aa18.05■□□□□ 0.48
CLN3-240ENST00000631023 NRN1LQ496H8 165 aa18.05■□□□□ 0.48
CLN3-240ENST00000631023 C10orf128Q5T292 105 aa18.05■□□□□ 0.48
CLN3-240ENST00000631023 GPR139Q6DWJ6 353 aa18.05■□□□□ 0.48
CLN3-240ENST00000631023 DPY19L2P2Q6ZN68 376 aa18.05■□□□□ 0.48
CLN3-240ENST00000631023 SLC22A24Q8N4F4 322 aa18.05■□□□□ 0.48
CLN3-240ENST00000631023 ZNF519Q8TB69 540 aa18.05■□□□□ 0.48
CLN3-240ENST00000631023 GPX7Q96SL4 187 aaPredicted RBP18.05■□□□□ 0.48
CLN3-240ENST00000631023 GPA33Q99795 319 aa18.05■□□□□ 0.48
CLN3-240ENST00000631023 DENND2DQ9H6A0 471 aaPredicted RBP18.05■□□□□ 0.48
CLN3-240ENST00000631023 YY1AP1Q9H869 796 aa18.05■□□□□ 0.48
CLN3-240ENST00000631023 BEX4Q9NWD9 120 aaPredicted RBP18.05■□□□□ 0.48
CLN3-240ENST00000631023 SAMHD1Q9Y3Z3 626 aaKnown RBP18.05■□□□□ 0.48
CLN3-240ENST00000631023 MAP1AP78559 2803 aaPredicted RBP18.05■□□□□ 0.48
CLN3-240ENST00000631023 ARHGEF9O43307 516 aa18.04■□□□□ 0.48
CLN3-240ENST00000631023 AHCYL1O43865 530 aa18.04■□□□□ 0.48
CLN3-240ENST00000631023 CCNB2O95067 398 aa18.04■□□□□ 0.48
CLN3-240ENST00000631023 UBL3O95164 117 aa18.04■□□□□ 0.48
CLN3-240ENST00000631023 CST1P01037 141 aa18.04■□□□□ 0.48
CLN3-240ENST00000631023 IGKV3-15P01624 115 aa18.04■□□□□ 0.48
CLN3-240ENST00000631023 CRYAAP02489 173 aa18.04■□□□□ 0.48
CLN3-240ENST00000631023 ZNF26P17031 533 aaPredicted RBP18.04■□□□□ 0.48
CLN3-240ENST00000631023 GSSP48637 474 aa18.04■□□□□ 0.48
CLN3-240ENST00000631023 TSPAN31Q12999 210 aa18.04■□□□□ 0.48
CLN3-240ENST00000631023 GSG1Q2KHT4 349 aa18.04■□□□□ 0.48
CLN3-240ENST00000631023 NEUROG1Q92886 237 aa18.04■□□□□ 0.48
CLN3-240ENST00000631023 ZNF570Q96NI8 536 aa18.04■□□□□ 0.48
CLN3-240ENST00000631023 NRIP3Q9NQ35 241 aa18.04■□□□□ 0.48
CLN3-240ENST00000631023 FAIMQ9NVQ4 179 aa18.04■□□□□ 0.48
CLN3-240ENST00000631023 B3GNT2Q9NY97 397 aa18.04■□□□□ 0.48
CLN3-240ENST00000631023 ADAM18Q9Y3Q7 739 aa18.04■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms