RNA–Protein interactions for RNA: ENST00000628023.3

CLN3-239, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,183 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-239ENST00000628023 PRRC2AP48634 2157 aaKnown RBP15.87■□□□□ 0.13
CLN3-239ENST00000628023 A0A096LPE4 126 aa15.86■□□□□ 0.13
CLN3-239ENST00000628023 A0A1W2PPZ6 126 aa15.86■□□□□ 0.13
CLN3-239ENST00000628023 CENPBD1B2RD01 187 aa15.86■□□□□ 0.13
CLN3-239ENST00000628023 SEC14L2O76054 403 aa15.86■□□□□ 0.13
CLN3-239ENST00000628023 GOSR1O95249 250 aa15.86■□□□□ 0.13
CLN3-239ENST00000628023 QDPRP09417 244 aa15.86■□□□□ 0.13
CLN3-239ENST00000628023 ZNF26P17031 533 aaPredicted RBP15.86■□□□□ 0.13
CLN3-239ENST00000628023 FASP25445 335 aa15.86■□□□□ 0.13
CLN3-239ENST00000628023 RPS6KA3P51812 740 aa15.86■□□□□ 0.13
CLN3-239ENST00000628023 UBE2NP61088 152 aaKnown RBP15.86■□□□□ 0.13
CLN3-239ENST00000628023 ACTR3P61158 418 aa15.86■□□□□ 0.13
CLN3-239ENST00000628023 ARF1P84077 181 aaKnown RBP15.86■□□□□ 0.13
CLN3-239ENST00000628023 MYBPC1Q00872 1141 aa15.86■□□□□ 0.13
CLN3-239ENST00000628023 RUNX1T1Q06455 604 aa15.86■□□□□ 0.13
CLN3-239ENST00000628023 HIKESHIQ53FT3 197 aa15.86■□□□□ 0.13
CLN3-239ENST00000628023 RPL13AP3Q6NVV1 102 aa15.86■□□□□ 0.13
CLN3-239ENST00000628023 THSD4Q6ZMP0 1018 aa15.86■□□□□ 0.13
CLN3-239ENST00000628023 DPY19L2P2Q6ZN68 376 aa15.86■□□□□ 0.13
CLN3-239ENST00000628023 ZNF620Q6ZNG0 422 aa15.86■□□□□ 0.13
CLN3-239ENST00000628023 C22orf34Q6ZV56 151 aa15.86■□□□□ 0.13
CLN3-239ENST00000628023 SSX8Q7RTT4 187 aa15.86■□□□□ 0.13
CLN3-239ENST00000628023 HDAC2Q92769 488 aaKnown RBP15.86■□□□□ 0.13
CLN3-239ENST00000628023 MUS81Q96NY9 551 aa15.86■□□□□ 0.13
CLN3-239ENST00000628023 GPX7Q96SL4 187 aaPredicted RBP15.86■□□□□ 0.13
CLN3-239ENST00000628023 TMUB1Q9BVT8 246 aa15.86■□□□□ 0.13
CLN3-239ENST00000628023 IFT27Q9BW83 186 aa15.86■□□□□ 0.13
CLN3-239ENST00000628023 LIME1Q9H400 295 aa15.86■□□□□ 0.13
CLN3-239ENST00000628023 ARMC1Q9NVT9 282 aa15.86■□□□□ 0.13
CLN3-239ENST00000628023 PLEKHA6Q9Y2H5 1048 aa15.86■□□□□ 0.13
CLN3-239ENST00000628023 AMDHD2Q9Y303 409 aa15.86■□□□□ 0.13
CLN3-239ENST00000628023 TEX13CA0A0J9YWL9 993 aa15.85■□□□□ 0.13
CLN3-239ENST00000628023 A0A1W2PR80 420 aa15.85■□□□□ 0.13
CLN3-239ENST00000628023 ARRDC5A6NEK1 342 aa15.85■□□□□ 0.13
CLN3-239ENST00000628023 ZNF99A8MXY4 864 aaPredicted RBP15.85■□□□□ 0.13
CLN3-239ENST00000628023 ARHGEF9O43307 516 aa15.85■□□□□ 0.13
CLN3-239ENST00000628023 PPP1R3DO95685 299 aa15.85■□□□□ 0.13
CLN3-239ENST00000628023 GSTM3P21266 225 aa15.85■□□□□ 0.13
CLN3-239ENST00000628023 ZNF84P51523 738 aa15.85■□□□□ 0.13
CLN3-239ENST00000628023 ATP6AP1Q15904 470 aa15.85■□□□□ 0.13
CLN3-239ENST00000628023 RFX4Q33E94 735 aa15.85■□□□□ 0.13
CLN3-239ENST00000628023 TBRG1Q3YBR2 411 aa15.85■□□□□ 0.13
CLN3-239ENST00000628023 BEX5Q5H9J7 111 aa15.85■□□□□ 0.13
CLN3-239ENST00000628023 GPR139Q6DWJ6 353 aa15.85■□□□□ 0.13
CLN3-239ENST00000628023 ZNF770Q6IQ21 691 aaPredicted RBP15.85■□□□□ 0.13
CLN3-239ENST00000628023 ANKRD16Q6P6B7 361 aa15.85■□□□□ 0.13
CLN3-239ENST00000628023 TMEM179BQ7Z7N9 219 aa15.85■□□□□ 0.13
CLN3-239ENST00000628023 C10orf67Q8IYJ2 551 aa15.85■□□□□ 0.13
CLN3-239ENST00000628023 ZNF519Q8TB69 540 aa15.85■□□□□ 0.13
CLN3-239ENST00000628023 PYDC1Q8WXC3 89 aa15.85■□□□□ 0.13
CLN3-239ENST00000628023 ZNF837Q96EG3 531 aaPredicted RBP15.85■□□□□ 0.13
CLN3-239ENST00000628023 PIK3IP1Q96FE7 263 aa15.85■□□□□ 0.13
CLN3-239ENST00000628023 DUS3LQ96G46 650 aaKnown RBP15.85■□□□□ 0.13
CLN3-239ENST00000628023 SAMD8Q96LT4 415 aa15.85■□□□□ 0.13
CLN3-239ENST00000628023 Q96M85 177 aa15.85■□□□□ 0.13
CLN3-239ENST00000628023 ALG12Q9BV10 488 aa15.85■□□□□ 0.13
CLN3-239ENST00000628023 DGCR6LQ9BY27 220 aa15.85■□□□□ 0.13
CLN3-239ENST00000628023 EGLN3Q9H6Z9 239 aa15.85■□□□□ 0.13
CLN3-239ENST00000628023 ZNF556Q9HAH1 456 aa15.85■□□□□ 0.13
CLN3-239ENST00000628023 SLC17A5Q9NRA2 495 aa15.85■□□□□ 0.13
CLN3-239ENST00000628023 TBC1D23Q9NUY8 699 aa15.85■□□□□ 0.13
CLN3-239ENST00000628023 KIF17Q9P2E2 1029 aa15.85■□□□□ 0.13
CLN3-239ENST00000628023 IER3IP1Q9Y5U9 82 aa15.85■□□□□ 0.13
CLN3-239ENST00000628023 CDH10Q9Y6N8 788 aa15.85■□□□□ 0.13
CLN3-239ENST00000628023 SOCS2O14508 198 aa15.84■□□□□ 0.13
CLN3-239ENST00000628023 WNT11O96014 354 aa15.84■□□□□ 0.13
CLN3-239ENST00000628023 NOS3P29474 1203 aa15.84■□□□□ 0.13
CLN3-239ENST00000628023 SDHAP31040 664 aa15.84■□□□□ 0.13
CLN3-239ENST00000628023 CAPZA2P47755 286 aa15.84■□□□□ 0.13
CLN3-239ENST00000628023 FXYD6P3P58550 94 aa15.84■□□□□ 0.13
CLN3-239ENST00000628023 KRR1Q13601 381 aaKnown RBP15.84■□□□□ 0.13
CLN3-239ENST00000628023 CLEC12AQ5QGZ9 265 aa15.84■□□□□ 0.13
CLN3-239ENST00000628023 ZNF813Q6ZN06 617 aa15.84■□□□□ 0.13
CLN3-239ENST00000628023 ARIH2OSQ8N7S6 290 aa15.84■□□□□ 0.13
CLN3-239ENST00000628023 ATG16L2Q8NAA4 619 aa15.84■□□□□ 0.13
CLN3-239ENST00000628023 MAGEE2Q8TD90 523 aaPredicted RBP15.84■□□□□ 0.13
CLN3-239ENST00000628023 MCHR2Q969V1 340 aa15.84■□□□□ 0.13
CLN3-239ENST00000628023 RASD2Q96D21 266 aa15.84■□□□□ 0.13
CLN3-239ENST00000628023 ERMAPQ96PL5 475 aaPredicted RBP15.84■□□□□ 0.13
CLN3-239ENST00000628023 FEVQ99581 238 aa15.84■□□□□ 0.13
CLN3-239ENST00000628023 FOXB1Q99853 325 aa15.84■□□□□ 0.13
CLN3-239ENST00000628023 BDH2Q9BUT1 245 aa15.84■□□□□ 0.13
CLN3-239ENST00000628023 MRPL13Q9BYD1 178 aaKnown RBP15.84■□□□□ 0.13
CLN3-239ENST00000628023 NRIP3Q9NQ35 241 aa15.84■□□□□ 0.13
CLN3-239ENST00000628023 MAGED1Q9Y5V3 778 aaPredicted RBP15.84■□□□□ 0.13
CLN3-239ENST00000628023 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP15.83■□□□□ 0.12
CLN3-239ENST00000628023 DEFB108AA8MXU0 73 aa15.83■□□□□ 0.12
CLN3-239ENST00000628023 H7C1C5 153 aa15.83■□□□□ 0.12
CLN3-239ENST00000628023 DHHO43323 396 aa15.83■□□□□ 0.12
CLN3-239ENST00000628023 SOX14O95416 240 aa15.83■□□□□ 0.12
CLN3-239ENST00000628023 RAF1P04049 648 aa15.83■□□□□ 0.12
CLN3-239ENST00000628023 B4GALT1P15291 398 aa15.83■□□□□ 0.12
CLN3-239ENST00000628023 NR1H2P55055 460 aa15.83■□□□□ 0.12
CLN3-239ENST00000628023 LCN6P62502 163 aa15.83■□□□□ 0.12
CLN3-239ENST00000628023 FMODQ06828 376 aa15.83■□□□□ 0.12
CLN3-239ENST00000628023 KEAP1Q14145 624 aa15.83■□□□□ 0.12
CLN3-239ENST00000628023 MESTQ5EB52 335 aa15.83■□□□□ 0.12
CLN3-239ENST00000628023 ZFP1Q6P2D0 407 aa15.83■□□□□ 0.12
CLN3-239ENST00000628023 SHQ1Q6PI26 577 aaKnown RBP15.83■□□□□ 0.12
CLN3-239ENST00000628023 KLHL17Q6TDP4 642 aa15.83■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms