RNA–Protein interactions for RNA: ENST00000616974.1

LINC00540-202, long intergenic non-protein coding RNA 540, humanhuman

TSL 1 (best)

Gene LINC00540, Length 2,143 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-202ENST00000616974 MCHR2Q969V1 340 aa11.78□□□□□ -0.52
LINC00540-202ENST00000616974 ZNF566Q969W8 418 aa11.78□□□□□ -0.52
LINC00540-202ENST00000616974 MS4A3Q96HJ5 214 aa11.78□□□□□ -0.52
LINC00540-202ENST00000616974 SAMD8Q96LT4 415 aa11.78□□□□□ -0.52
LINC00540-202ENST00000616974 TSSK2Q96PF2 358 aa11.78□□□□□ -0.52
LINC00540-202ENST00000616974 KCNK17Q96T54 332 aa11.78□□□□□ -0.52
LINC00540-202ENST00000616974 ULBP2Q9BZM5 246 aa11.78□□□□□ -0.52
LINC00540-202ENST00000616974 LINC00470Q9BZP3 86 aa11.78□□□□□ -0.52
LINC00540-202ENST00000616974 OR52D1Q9H346 318 aa11.78□□□□□ -0.52
LINC00540-202ENST00000616974 TXNIPQ9H3M7 391 aa11.78□□□□□ -0.52
LINC00540-202ENST00000616974 SLC17A5Q9NRA2 495 aa11.78□□□□□ -0.52
LINC00540-202ENST00000616974 CCM2LQ9NUG4 571 aaPredicted RBP11.78□□□□□ -0.52
LINC00540-202ENST00000616974 TEX13CA0A0J9YWL9 993 aa11.78□□□□□ -0.52
LINC00540-202ENST00000616974 A0A1W2PRG6 482 aa11.78□□□□□ -0.52
LINC00540-202ENST00000616974 RPL36A-HNRNPH2H7BZ11 118 aa11.78□□□□□ -0.52
LINC00540-202ENST00000616974 DCTN6O00399 190 aa11.78□□□□□ -0.52
LINC00540-202ENST00000616974 RPL4P36578 427 aaKnown RBP11.78□□□□□ -0.52
LINC00540-202ENST00000616974 PIGFQ07326 219 aa11.78□□□□□ -0.52
LINC00540-202ENST00000616974 TIMM23BQ5SRD1 257 aa11.78□□□□□ -0.52
LINC00540-202ENST00000616974 NOXO1Q8NFA2 376 aa11.78□□□□□ -0.52
LINC00540-202ENST00000616974 KBTBD8Q8NFY9 601 aa11.78□□□□□ -0.52
LINC00540-202ENST00000616974 SH3GL3Q99963 347 aa11.78□□□□□ -0.52
LINC00540-202ENST00000616974 IER3IP1Q9Y5U9 82 aa11.78□□□□□ -0.52
LINC00540-202ENST00000616974 SOCS2O14508 198 aa11.77□□□□□ -0.52
LINC00540-202ENST00000616974 CASKO14936 926 aa11.77□□□□□ -0.52
LINC00540-202ENST00000616974 ACADSP16219 412 aa11.77□□□□□ -0.52
LINC00540-202ENST00000616974 SSTR2P30874 369 aa11.77□□□□□ -0.52
LINC00540-202ENST00000616974 PCYT1AP49585 367 aa11.77□□□□□ -0.52
LINC00540-202ENST00000616974 RASSF2P50749 326 aa11.77□□□□□ -0.52
LINC00540-202ENST00000616974 RPL27P61353 136 aaKnown RBP11.77□□□□□ -0.52
LINC00540-202ENST00000616974 FBXW10Q5XX13 1052 aa11.77□□□□□ -0.52
LINC00540-202ENST00000616974 AMIGO2Q86SJ2 522 aa11.77□□□□□ -0.52
LINC00540-202ENST00000616974 FANK1Q8TC84 345 aa11.77□□□□□ -0.52
LINC00540-202ENST00000616974 FN3KQ9H479 309 aa11.77□□□□□ -0.52
LINC00540-202ENST00000616974 ZNF226Q9NYT6 803 aa11.77□□□□□ -0.52
LINC00540-202ENST00000616974 PLEKHA6Q9Y2H5 1048 aa11.77□□□□□ -0.52
LINC00540-202ENST00000616974 UGT2A1Q9Y4X1 527 aa11.77□□□□□ -0.52
LINC00540-202ENST00000616974 ZNF99A8MXY4 864 aaPredicted RBP11.77□□□□□ -0.53
LINC00540-202ENST00000616974 M0R1B8 84 aa11.77□□□□□ -0.53
LINC00540-202ENST00000616974 ARHGEF9O43307 516 aa11.77□□□□□ -0.53
LINC00540-202ENST00000616974 FPR3P25089 353 aa11.77□□□□□ -0.53
LINC00540-202ENST00000616974 CDKN2AP42771 156 aaKnown RBP11.77□□□□□ -0.53
LINC00540-202ENST00000616974 CLRN1P58418 232 aa11.77□□□□□ -0.53
LINC00540-202ENST00000616974 CD47Q08722 323 aa11.77□□□□□ -0.53
LINC00540-202ENST00000616974 MICAQ29983 383 aa11.77□□□□□ -0.53
LINC00540-202ENST00000616974 SLC35F1Q5T1Q4 408 aa11.77□□□□□ -0.53
LINC00540-202ENST00000616974 SMARCD3Q6STE5 483 aa11.77□□□□□ -0.53
LINC00540-202ENST00000616974 ZNF813Q6ZN06 617 aa11.77□□□□□ -0.53
LINC00540-202ENST00000616974 ZNF620Q6ZNG0 422 aa11.77□□□□□ -0.53
LINC00540-202ENST00000616974 SKA3Q8IX90 412 aa11.77□□□□□ -0.53
LINC00540-202ENST00000616974 PAPD5Q8NDF8 572 aaKnown RBP11.77□□□□□ -0.53
LINC00540-202ENST00000616974 LRTOMTQ8WZ04 291 aa11.77□□□□□ -0.53
LINC00540-202ENST00000616974 HSD17B8Q92506 261 aa11.77□□□□□ -0.53
LINC00540-202ENST00000616974 FEVQ99581 238 aa11.77□□□□□ -0.53
LINC00540-202ENST00000616974 HDHD5Q9BXW7 423 aa11.77□□□□□ -0.53
LINC00540-202ENST00000616974 SEMA6AQ9H2E6 1030 aa11.77□□□□□ -0.53
LINC00540-202ENST00000616974 REEP1Q9H902 201 aa11.77□□□□□ -0.53
LINC00540-202ENST00000616974 NRIP3Q9NQ35 241 aa11.77□□□□□ -0.53
LINC00540-202ENST00000616974 TMCC3Q9ULS5 477 aa11.77□□□□□ -0.53
LINC00540-202ENST00000616974 CCNB2O95067 398 aa11.76□□□□□ -0.53
LINC00540-202ENST00000616974 IGHG1P01857 330 aa11.76□□□□□ -0.53
LINC00540-202ENST00000616974 CD14P08571 375 aa11.76□□□□□ -0.53
LINC00540-202ENST00000616974 B3GLCTQ6Y288 498 aa11.76□□□□□ -0.53
LINC00540-202ENST00000616974 CDK20Q8IZL9 346 aa11.76□□□□□ -0.53
LINC00540-202ENST00000616974 LRRC18Q8N456 261 aa11.76□□□□□ -0.53
LINC00540-202ENST00000616974 IQCF1Q8N6M8 205 aa11.76□□□□□ -0.53
LINC00540-202ENST00000616974 OR10G2Q8NGC3 310 aa11.76□□□□□ -0.53
LINC00540-202ENST00000616974 ZNRF4Q8WWF5 429 aa11.76□□□□□ -0.53
LINC00540-202ENST00000616974 LRR1Q96L50 414 aa11.76□□□□□ -0.53
LINC00540-202ENST00000616974 FOXB1Q99853 325 aa11.76□□□□□ -0.53
LINC00540-202ENST00000616974 TRIM15Q9C019 465 aa11.76□□□□□ -0.53
LINC00540-202ENST00000616974 DENND2DQ9H6A0 471 aaPredicted RBP11.76□□□□□ -0.53
LINC00540-202ENST00000616974 ABCD4O14678 606 aa11.75□□□□□ -0.53
LINC00540-202ENST00000616974 KRT36O76013 467 aa11.75□□□□□ -0.53
LINC00540-202ENST00000616974 NDUFB2O95178 105 aa11.75□□□□□ -0.53
LINC00540-202ENST00000616974 MPZL1O95297 269 aa11.75□□□□□ -0.53
LINC00540-202ENST00000616974 IGHMP01871 453 aa11.75□□□□□ -0.53
LINC00540-202ENST00000616974 CTLA4P16410 223 aa11.75□□□□□ -0.53
LINC00540-202ENST00000616974 NCMAPQ5T1S8 102 aa11.75□□□□□ -0.53
LINC00540-202ENST00000616974 MDP1Q86V88 176 aa11.75□□□□□ -0.53
LINC00540-202ENST00000616974 ARIH2OSQ8N7S6 290 aa11.75□□□□□ -0.53
LINC00540-202ENST00000616974 OR4Q3Q8NH05 313 aa11.75□□□□□ -0.53
LINC00540-202ENST00000616974 SYT4Q9H2B2 425 aa11.75□□□□□ -0.53
LINC00540-202ENST00000616974 ARMC1Q9NVT9 282 aa11.75□□□□□ -0.53
LINC00540-202ENST00000616974 PDP1Q9P0J1 537 aaPredicted RBP11.75□□□□□ -0.53
LINC00540-202ENST00000616974 TMEM5Q9Y2B1 443 aa11.75□□□□□ -0.53
LINC00540-202ENST00000616974 IGHV1-18A0A0C4DH31 117 aa11.75□□□□□ -0.53
LINC00540-202ENST00000616974 SHISA9B4DS77 424 aa11.75□□□□□ -0.53
LINC00540-202ENST00000616974 H3BNX3 289 aa11.75□□□□□ -0.53
LINC00540-202ENST00000616974 DHHO43323 396 aa11.75□□□□□ -0.53
LINC00540-202ENST00000616974 ENTPD5O75356 428 aa11.75□□□□□ -0.53
LINC00540-202ENST00000616974 HIST1H1CP16403 213 aaKnown RBP11.75□□□□□ -0.53
LINC00540-202ENST00000616974 CAPZA2P47755 286 aa11.75□□□□□ -0.53
LINC00540-202ENST00000616974 DAP3P51398 398 aaKnown RBP11.75□□□□□ -0.53
LINC00540-202ENST00000616974 NPRL3Q12980 569 aa11.75□□□□□ -0.53
LINC00540-202ENST00000616974 TSPAN31Q12999 210 aa11.75□□□□□ -0.53
LINC00540-202ENST00000616974 UGT2A3Q6UWM9 527 aa11.75□□□□□ -0.53
LINC00540-202ENST00000616974 LYPD4Q6UWN0 246 aa11.75□□□□□ -0.53
LINC00540-202ENST00000616974 PIAS4Q8N2W9 510 aaPredicted RBP11.75□□□□□ -0.53
LINC00540-202ENST00000616974 OR4K13Q8NH42 304 aa11.75□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms